Wall clock time and date at job start Tue Mar 31 2020 12:38:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.37894 * 119.96761 * 2 1 4 4 C 1.39364 * 119.93992 * 180.02562 * 3 2 1 5 5 C 1.48358 * 120.06648 * 179.97438 * 4 3 2 6 6 N 1.30959 * 126.30291 * 359.68730 * 5 4 3 7 7 O 1.21268 * 110.35702 * 179.84168 * 6 5 4 8 8 C 1.34305 * 109.89551 * 0.42813 * 7 6 5 9 9 C 1.47441 * 126.58216 * 179.71539 * 8 7 6 10 10 C 1.40130 * 119.90195 * 179.75014 * 9 8 7 11 11 C 1.36209 * 120.10306 * 179.75999 * 10 9 8 12 12 C 1.40966 * 119.89522 * 0.51361 * 11 10 9 13 13 C 1.40966 * 120.09587 * 179.71719 * 12 11 10 14 14 H 1.08000 * 120.00339 * 24.71986 * 13 12 11 15 15 C 1.40151 * 119.99534 * 204.71538 * 13 12 11 16 16 N 1.30696 * 120.00383 * 17.94041 * 15 13 12 17 17 Si 1.86804 * 119.99796 * 197.93338 * 15 13 12 18 18 H 1.48498 * 109.46970 * 0.02562 * 17 15 13 19 19 H 1.48503 * 109.46949 * 120.00164 * 17 15 13 20 20 H 1.48495 * 109.47393 * 240.00425 * 17 15 13 21 21 C 1.40959 * 119.80153 * 359.74124 * 12 11 10 22 22 C 1.36208 * 119.89576 * 0.02562 * 21 12 11 23 23 N 1.32160 * 106.83857 * 359.73386 * 8 7 6 24 24 C 1.39411 * 119.87357 * 0.02562 * 4 3 2 25 25 C 1.37861 * 119.93485 * 359.97341 * 24 4 3 26 26 C 1.38841 * 119.96889 * 180.02562 * 2 1 3 27 27 O 1.35828 * 119.93806 * 359.97438 * 26 2 1 28 28 H 1.09003 * 109.46873 * 269.98003 * 1 2 3 29 29 H 1.09002 * 109.46889 * 29.98005 * 1 2 3 30 30 H 1.09002 * 109.46926 * 149.97966 * 1 2 3 31 31 H 1.07997 * 120.03282 * 0.04334 * 3 2 1 32 32 H 1.08002 * 119.94485 * 359.97438 * 10 9 8 33 33 H 1.08005 * 120.04818 * 180.25268 * 11 10 9 34 34 H 0.97001 * 120.00408 * 179.97438 * 16 15 13 35 35 H 1.07999 * 120.05046 * 179.97438 * 21 12 11 36 36 H 1.08006 * 119.94385 * 180.02562 * 22 21 12 37 37 H 1.07996 * 120.03551 * 180.25587 * 24 4 3 38 38 H 1.07993 * 119.96646 * 179.97438 * 25 24 4 39 39 H 0.96703 * 114.00047 * 269.97736 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1958 1.1946 0.0000 4 6 3.5894 1.1939 -0.0005 5 6 4.3333 2.4775 -0.0011 6 7 3.8090 3.6775 -0.0069 7 8 4.6819 4.5193 -0.0025 8 6 5.8875 3.9276 -0.0026 9 6 7.1980 4.6032 -0.0039 10 6 8.3756 3.8436 0.0015 11 6 9.5884 4.4635 -0.0046 12 6 9.6579 5.8715 -0.0054 13 6 10.9108 6.5174 -0.0057 14 1 11.7802 6.0095 -0.3965 15 6 11.0283 7.8188 0.5010 16 7 10.0969 8.3038 1.2791 17 14 12.5164 8.8603 0.0645 18 1 13.4187 8.0859 -0.8251 19 1 12.0705 10.0922 -0.6346 20 1 13.2427 9.2308 1.3056 21 6 8.4707 6.6315 -0.0054 22 6 7.2623 6.0029 -0.0041 23 7 5.6739 2.6233 -0.0016 24 6 4.2832 -0.0153 -0.0016 25 6 3.5894 -1.2066 -0.0016 26 6 2.2006 -1.2028 -0.0005 27 8 1.5195 -2.3780 -0.0005 28 1 -0.3633 -0.0004 1.0277 29 1 -0.3633 0.8902 -0.5135 30 1 -0.3633 -0.8898 -0.5142 31 1 1.6558 2.1299 0.0007 32 1 8.3214 2.7650 0.0071 33 1 10.4955 3.8772 -0.0045 34 1 10.1784 9.2044 1.6302 35 1 8.5192 7.7104 -0.0056 36 1 6.3521 6.5845 -0.0045 37 1 5.3632 -0.0189 0.0021 38 1 4.1263 -2.1435 -0.0028 39 1 1.3229 -2.7187 0.8829 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000571248931.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:38:36 Heat of formation + Delta-G solvation = 40.273617 kcal Electronic energy + Delta-G solvation = -24537.461447 eV Core-core repulsion = 20797.881985 eV Total energy + Delta-G solvation = -3739.579462 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.110 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -46.22389 -40.96246 -39.58904 -38.05045 -36.52539 -35.90450 -33.96628 -33.67451 -31.84342 -31.35007 -30.67424 -28.03758 -27.62715 -25.52072 -24.76875 -23.36749 -22.83207 -22.41658 -21.46803 -19.41333 -19.34800 -18.92701 -18.79823 -17.46900 -17.11923 -16.85345 -16.45418 -16.23585 -15.80295 -15.33875 -15.08807 -14.53776 -14.41971 -14.24238 -14.04009 -13.83384 -13.77052 -13.55859 -13.51824 -13.24551 -13.07129 -12.90434 -12.81880 -12.69287 -12.41777 -12.34957 -11.99370 -11.70834 -11.51090 -11.43603 -11.40799 -11.01621 -9.95406 -9.64687 -9.54354 -9.27486 -8.85846 -6.51007 -0.47474 -0.09267 0.22118 0.99840 1.14338 1.38986 1.43035 1.57870 1.70032 1.95671 2.15288 2.55913 2.57039 2.63838 3.07211 3.19198 3.60492 3.78516 3.81352 4.09085 4.14982 4.34759 4.37097 4.43884 4.52898 4.70135 4.76960 4.79469 4.82655 4.93287 4.94862 4.99356 5.11395 5.17705 5.22824 5.27315 5.37132 5.39424 5.54682 5.68988 5.76994 5.93886 5.96883 6.13464 6.47523 6.69255 6.80247 6.80311 7.22920 8.07929 Molecular weight = 322.11amu Principal moments of inertia in cm(-1) A = 0.040506 B = 0.002136 C = 0.002043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 691.091198 B =13104.904868 C =13704.062570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.117 4.117 3 C -0.077 4.077 4 C -0.047 4.047 5 C 0.213 3.787 6 N -0.418 5.418 7 O 0.045 5.955 8 C 0.277 3.723 9 C -0.209 4.209 10 C -0.018 4.018 11 C -0.242 4.242 12 C 0.102 3.898 13 C -0.448 4.448 14 H 0.096 0.904 15 C 0.034 3.966 16 N -0.788 5.788 17 Si 0.990 3.010 18 H -0.252 1.252 19 H -0.263 1.263 20 H -0.264 1.264 21 C -0.192 4.192 22 C -0.051 4.051 23 N -0.528 5.528 24 C -0.072 4.072 25 C -0.140 4.140 26 C 0.129 3.871 27 O -0.496 6.496 28 H 0.087 0.913 29 H 0.070 0.930 30 H 0.082 0.918 31 H 0.130 0.870 32 H 0.118 0.882 33 H 0.118 0.882 34 H 0.300 0.700 35 H 0.116 0.884 36 H 0.114 0.886 37 H 0.134 0.866 38 H 0.160 0.840 39 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.799 -11.989 0.110 16.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.118 4.118 3 C -0.097 4.097 4 C -0.049 4.049 5 C -0.058 4.058 6 N -0.136 5.136 7 O -0.007 6.007 8 C 0.068 3.932 9 C -0.215 4.215 10 C -0.037 4.037 11 C -0.262 4.262 12 C 0.098 3.902 13 C -0.474 4.474 14 H 0.114 0.886 15 C -0.186 4.186 16 N -0.411 5.411 17 Si 0.809 3.191 18 H -0.175 1.175 19 H -0.187 1.187 20 H -0.188 1.188 21 C -0.212 4.212 22 C -0.072 4.072 23 N -0.263 5.263 24 C -0.092 4.092 25 C -0.159 4.159 26 C 0.083 3.917 27 O -0.310 6.310 28 H 0.105 0.895 29 H 0.089 0.911 30 H 0.101 0.899 31 H 0.148 0.852 32 H 0.136 0.864 33 H 0.136 0.864 34 H 0.112 0.888 35 H 0.134 0.866 36 H 0.132 0.868 37 H 0.152 0.848 38 H 0.178 0.822 39 H 0.275 0.725 Dipole moment (debyes) X Y Z Total from point charges -11.605 -11.990 -0.330 16.690 hybrid contribution 0.728 0.932 0.528 1.295 sum -10.878 -11.058 0.197 15.513 Atomic orbital electron populations 1.20736 0.88120 1.03877 1.03668 1.20366 0.98437 0.91363 1.01626 1.21001 0.91679 0.98916 0.98094 1.17584 0.92688 0.87481 1.07110 1.24217 0.87698 0.93991 0.99864 1.74706 1.13502 0.99460 1.25912 1.85278 1.13139 1.33783 1.68455 1.26605 0.88958 0.86361 0.91320 1.16765 0.84650 0.92514 1.27525 1.20444 0.90871 0.98487 0.93939 1.20867 0.96583 0.94227 1.14510 1.18198 0.93996 0.92073 0.85898 1.20274 0.95834 0.98975 1.32329 0.88572 1.27037 1.01152 0.98721 0.91714 1.69786 1.33993 1.17746 1.19529 0.85018 0.76863 0.77726 0.79468 1.17537 1.18700 1.18832 1.20950 0.91461 0.99749 1.09031 1.20619 0.97890 0.92272 0.96374 1.72214 1.13028 1.14151 1.26860 1.21143 1.00874 0.90455 0.96697 1.21558 0.93658 0.98730 1.01919 1.18436 0.89673 0.85396 0.98146 1.84713 1.75768 1.34910 1.35599 0.89485 0.91098 0.89892 0.85215 0.86426 0.86414 0.88839 0.86632 0.86844 0.84779 0.82226 0.72534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.55 9.79 71.24 0.70 -0.85 16 2 C -0.12 -2.43 5.89 -19.80 -0.12 -2.55 16 3 C -0.08 -2.04 9.33 22.46 0.21 -1.83 16 4 C -0.05 -1.47 5.88 -20.03 -0.12 -1.59 16 5 C 0.21 8.27 7.79 137.34 1.07 9.34 16 6 N -0.42 -16.98 11.83 -57.39 -0.68 -17.66 16 7 O 0.05 1.92 11.09 68.67 0.76 2.68 16 8 C 0.28 12.06 7.98 87.15 0.70 12.75 16 9 C -0.21 -9.43 5.89 -19.94 -0.12 -9.54 16 10 C -0.02 -0.77 9.63 22.26 0.21 -0.56 16 11 C -0.24 -10.96 9.73 22.47 0.22 -10.74 16 12 C 0.10 4.99 5.57 -21.28 -0.12 4.87 16 13 C -0.45 -20.94 9.03 23.40 0.21 -20.73 16 14 H 0.10 4.22 7.91 -2.91 -0.02 4.20 16 15 C 0.03 1.50 5.13 85.33 0.44 1.94 16 16 N -0.79 -36.04 10.96 21.86 0.24 -35.81 16 17 Si 0.99 32.59 29.60 68.60 2.03 34.62 16 18 H -0.25 -8.10 7.11 99.48 0.71 -7.39 16 19 H -0.26 -8.40 7.11 99.48 0.71 -7.69 16 20 H -0.26 -8.38 7.11 99.48 0.71 -7.67 16 21 C -0.19 -9.30 8.63 22.46 0.19 -9.11 16 22 C -0.05 -2.33 9.65 22.25 0.21 -2.12 16 23 N -0.53 -22.09 10.92 -301.99 -3.30 -25.39 16 24 C -0.07 -1.93 9.69 22.46 0.22 -1.71 16 25 C -0.14 -2.87 9.97 22.33 0.22 -2.65 16 26 C 0.13 2.46 6.68 22.57 0.15 2.61 16 27 O -0.50 -6.85 12.53 -91.62 -1.15 -8.00 16 28 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 29 H 0.07 1.01 8.08 -2.39 -0.02 0.99 16 30 H 0.08 1.07 7.52 -2.39 -0.02 1.05 16 31 H 0.13 3.47 7.86 -2.91 -0.02 3.44 16 32 H 0.12 4.77 7.85 -2.91 -0.02 4.75 16 33 H 0.12 4.84 8.06 -2.91 -0.02 4.82 16 34 H 0.30 12.15 8.29 -92.71 -0.77 11.38 16 35 H 0.12 5.69 6.16 -2.91 -0.02 5.67 16 36 H 0.11 4.70 7.92 -2.91 -0.02 4.68 16 37 H 0.13 3.70 7.86 -2.91 -0.02 3.68 16 38 H 0.16 2.41 8.06 -2.91 -0.02 2.38 16 39 H 0.41 1.59 9.06 -74.05 -0.67 0.92 16 Total: -1.00 -58.48 347.30 2.64 -55.84 By element: Atomic # 1 Polarization: 25.73 SS G_CDS: 0.44 Total: 26.17 kcal Atomic # 6 Polarization: -36.74 SS G_CDS: 4.28 Total: -32.46 kcal Atomic # 7 Polarization: -75.12 SS G_CDS: -3.74 Total: -78.85 kcal Atomic # 8 Polarization: -4.93 SS G_CDS: -0.39 Total: -5.32 kcal Atomic # 14 Polarization: 32.59 SS G_CDS: 2.03 Total: 34.62 kcal Total: -58.48 2.64 -55.84 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000571248931.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.116 kcal (2) G-P(sol) polarization free energy of solvation -58.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.842 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds