Wall clock time and date at job start Tue Mar 31 2020 13:44:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47169 * 2 1 4 4 C 1.52995 * 109.47047 * 239.99487 * 2 1 3 5 5 C 1.47205 * 109.47160 * 60.00722 * 4 2 1 6 6 N 3.43546 * 83.99743 * 278.55149 * 2 1 3 7 7 C 1.52999 * 109.46854 * 119.99715 * 2 1 3 8 8 N 1.46502 * 109.47514 * 299.99742 * 7 2 1 9 9 S 1.65597 * 120.00255 * 163.78370 * 8 7 2 10 10 O 1.42106 * 106.40079 * 179.14549 * 9 8 7 11 11 O 1.42105 * 106.40372 * 312.06186 * 9 8 7 12 12 C 1.76193 * 107.21829 * 65.60568 * 9 8 7 13 13 C 1.37631 * 120.13186 * 112.30178 * 12 9 8 14 14 C 1.38608 * 120.25334 * 179.97438 * 13 12 9 15 15 C 1.38661 * 120.50026 * 0.02562 * 14 13 12 16 16 C 1.37598 * 120.24867 * 0.02562 * 15 14 13 17 17 C 1.40706 * 120.12533 * 292.02673 * 12 9 8 18 18 C 1.41392 * 120.24568 * 359.97438 * 17 12 9 19 19 H 1.08000 * 119.99862 * 328.02712 * 18 17 12 20 20 C 1.39938 * 120.00268 * 148.02643 * 18 17 12 21 21 N 1.30826 * 120.00202 * 163.86695 * 20 18 17 22 22 Si 1.86800 * 119.99989 * 343.87159 * 20 18 17 23 23 H 1.48496 * 109.47319 * 94.88900 * 22 20 18 24 24 H 1.48496 * 109.47332 * 214.89137 * 22 20 18 25 25 H 1.48499 * 109.47103 * 334.88855 * 22 20 18 26 26 H 1.09003 * 109.47082 * 300.00420 * 1 2 3 27 27 H 1.09003 * 109.46866 * 60.00128 * 1 2 3 28 28 H 1.08997 * 109.47414 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.47069 * 180.02562 * 3 2 1 30 30 H 1.09003 * 109.47122 * 299.99715 * 3 2 1 31 31 H 1.08993 * 109.47375 * 59.99897 * 3 2 1 32 32 H 1.09006 * 109.47262 * 179.97438 * 4 2 1 33 33 H 1.08997 * 109.47311 * 300.00427 * 4 2 1 34 34 H 1.08997 * 109.47497 * 179.97438 * 7 2 1 35 35 H 1.09002 * 109.47469 * 59.99921 * 7 2 1 36 36 H 0.97005 * 119.99350 * 343.51429 * 8 7 2 37 37 H 1.08001 * 119.87639 * 359.97438 * 13 12 9 38 38 H 1.08005 * 119.75626 * 179.97438 * 14 13 12 39 39 H 1.08001 * 119.87678 * 179.97438 * 15 14 13 40 40 H 1.07995 * 120.12713 * 179.97438 * 16 15 14 41 41 H 0.97000 * 119.99965 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 1.5494 -0.0274 -2.4511 6 7 1.1707 0.5080 -3.3786 7 6 2.0399 -0.7212 1.2493 8 7 1.5516 -0.0305 2.4455 9 16 1.5978 -0.7894 3.9166 10 8 1.0810 0.1369 4.8623 11 8 1.0483 -2.0847 3.7174 12 6 3.2944 -1.0265 4.3282 13 6 3.8525 -0.3385 5.3815 14 6 5.1869 -0.5234 5.7079 15 6 5.9745 -1.4013 4.9788 16 6 5.4381 -2.0990 3.9211 17 6 4.0827 -1.9243 3.5849 18 6 3.5187 -2.6414 2.5047 19 1 2.4783 -2.9300 2.5328 20 6 4.3084 -2.9771 1.3994 21 7 3.9006 -3.8919 0.5577 22 14 5.9449 -2.1191 1.1256 23 1 7.0371 -2.9379 1.7103 24 1 6.1781 -1.9509 -0.3313 25 1 5.9207 -0.7863 1.7800 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 3.1301 1.4425 -0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 1.9563 0.8899 32 1 3.1300 -0.7210 -1.2494 33 1 1.6766 -1.7490 -1.2491 34 1 3.1299 -0.7217 1.2492 35 1 1.6766 -1.7489 1.2494 36 1 1.2050 0.8728 2.3763 37 1 3.2484 0.3482 5.9560 38 1 5.6166 0.0210 6.5358 39 1 7.0132 -1.5374 5.2416 40 1 6.0535 -2.7819 3.3543 41 1 4.4478 -4.1244 -0.2087 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601436105.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:44:01 Heat of formation + Delta-G solvation = -41.972473 kcal Electronic energy + Delta-G solvation = -26398.221694 eV Core-core repulsion = 22790.519724 eV Total energy + Delta-G solvation = -3607.701969 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 322.114 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -38.68616 -37.93438 -36.41744 -35.97316 -34.94804 -34.01848 -32.82226 -30.79573 -30.16732 -28.22658 -27.21979 -25.92952 -25.12849 -22.14575 -21.26101 -19.50656 -18.70987 -17.79035 -17.30248 -17.05617 -16.47680 -15.51570 -15.23723 -15.02785 -14.70364 -14.38902 -14.29090 -13.89984 -13.65859 -13.51398 -13.20865 -12.94698 -12.56732 -12.48727 -12.35705 -12.28248 -11.96533 -11.72163 -11.49068 -11.41073 -11.39306 -11.32066 -11.16980 -11.06899 -10.78325 -10.70948 -10.69426 -10.64832 -10.19079 -10.05708 -9.57655 -9.38813 -8.73163 -8.31114 -7.89960 -7.29009 -4.94665 1.42510 2.00486 2.44410 2.82666 2.85055 2.87990 2.93900 3.04831 3.66727 3.87118 4.10088 4.15247 4.58867 4.82005 4.86570 4.99235 5.02800 5.37360 5.47132 5.58989 5.71187 5.77517 5.78247 5.85270 5.89737 5.94290 6.01696 6.13721 6.22194 6.27837 6.33329 6.35171 6.48494 6.55757 6.69148 6.87301 7.02076 7.17580 7.35884 7.49190 7.59084 7.63989 7.75653 8.06497 8.24819 8.44490 9.66978 Molecular weight = 322.11amu Principal moments of inertia in cm(-1) A = 0.012289 B = 0.006810 C = 0.005177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2278.003420 B = 4110.815087 C = 5407.438568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.069 4.069 3 C -0.148 4.148 4 C -0.024 4.024 5 C 0.222 3.778 6 N -0.454 5.454 7 C 0.136 3.864 8 N -1.118 6.118 9 S 2.707 3.293 10 O -0.997 6.997 11 O -0.966 6.966 12 C -0.768 4.768 13 C 0.017 3.983 14 C -0.257 4.257 15 C -0.045 4.045 16 C -0.233 4.233 17 C 0.163 3.837 18 C -0.467 4.467 19 H 0.138 0.862 20 C 0.093 3.907 21 N -0.772 5.772 22 Si 0.889 3.111 23 H -0.266 1.266 24 H -0.281 1.281 25 H -0.238 1.238 26 H 0.064 0.936 27 H 0.049 0.951 28 H 0.066 0.934 29 H 0.063 0.937 30 H 0.051 0.949 31 H 0.063 0.937 32 H 0.111 0.889 33 H 0.120 0.880 34 H 0.081 0.919 35 H 0.101 0.899 36 H 0.405 0.595 37 H 0.113 0.887 38 H 0.101 0.899 39 H 0.099 0.901 40 H 0.106 0.894 41 H 0.292 0.708 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.514 5.168 -1.868 5.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.072 4.072 3 C -0.205 4.205 4 C -0.065 4.065 5 C -0.095 4.095 6 N -0.131 5.131 7 C 0.011 3.989 8 N -0.876 5.876 9 S 2.804 3.196 10 O -0.988 6.988 11 O -0.956 6.956 12 C -0.862 4.862 13 C -0.003 4.003 14 C -0.277 4.277 15 C -0.064 4.064 16 C -0.252 4.252 17 C 0.158 3.842 18 C -0.494 4.494 19 H 0.156 0.844 20 C -0.131 4.131 21 N -0.393 5.393 22 Si 0.714 3.286 23 H -0.192 1.192 24 H -0.208 1.208 25 H -0.161 1.161 26 H 0.083 0.917 27 H 0.068 0.932 28 H 0.085 0.915 29 H 0.083 0.917 30 H 0.070 0.930 31 H 0.082 0.918 32 H 0.129 0.871 33 H 0.138 0.862 34 H 0.099 0.901 35 H 0.119 0.881 36 H 0.239 0.761 37 H 0.131 0.869 38 H 0.119 0.881 39 H 0.117 0.883 40 H 0.124 0.876 41 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -0.783 5.336 -3.032 6.187 hybrid contribution 1.855 0.375 0.074 1.894 sum 1.072 5.711 -2.958 6.521 Atomic orbital electron populations 1.21944 0.93779 1.02880 1.01721 1.20818 0.96621 0.95938 0.93848 1.21974 1.01793 0.94965 1.01815 1.19456 1.02592 0.99400 0.85052 1.29191 0.92908 0.93243 0.94175 1.81180 1.09869 1.10114 1.11953 1.21793 0.99714 0.96181 0.81251 1.55557 1.79926 1.28242 1.23916 1.00898 0.74447 0.72923 0.71373 1.93465 1.79877 1.64829 1.60653 1.93508 1.77706 1.39389 1.84983 1.29945 1.25015 1.16391 1.14873 1.20394 0.94487 0.93031 0.92368 1.20529 0.94881 1.07278 1.05012 1.20858 0.97597 0.93772 0.94164 1.21236 0.97044 1.05481 1.01482 1.17108 0.90702 0.86510 0.89843 1.20526 1.02314 1.27153 0.99396 0.84446 1.26154 0.98943 0.92645 0.95318 1.69682 1.38192 1.20578 1.10866 0.86639 0.81525 0.83003 0.77403 1.19218 1.20819 1.16115 0.91746 0.93187 0.91528 0.91749 0.92974 0.91777 0.87099 0.86216 0.90125 0.88103 0.76068 0.86856 0.88131 0.88328 0.87632 0.89684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.70 8.05 37.16 0.30 -1.40 16 2 C -0.07 -0.84 0.57 -154.51 -0.09 -0.93 16 3 C -0.15 -1.65 8.05 37.16 0.30 -1.35 16 4 C -0.02 -0.28 4.79 -29.52 -0.14 -0.42 16 5 C 0.22 2.85 12.89 -20.76 -0.27 2.59 16 6 N -0.45 -6.85 18.54 42.15 0.78 -6.07 16 7 C 0.14 2.08 3.21 -4.04 -0.01 2.07 16 8 N -1.12 -17.38 5.31 -10.61 -0.06 -17.44 16 9 S 2.71 53.05 5.44 -107.50 -0.58 52.47 16 10 O -1.00 -20.67 16.97 -57.17 -0.97 -21.64 16 11 O -0.97 -21.68 14.95 -57.17 -0.85 -22.53 16 12 C -0.77 -16.28 5.96 -38.87 -0.23 -16.51 16 13 C 0.02 0.34 9.53 -39.67 -0.38 -0.04 16 14 C -0.26 -4.93 10.05 -39.29 -0.39 -5.33 16 15 C -0.05 -0.88 10.02 -39.66 -0.40 -1.28 16 16 C -0.23 -4.98 7.12 -38.87 -0.28 -5.26 16 17 C 0.16 3.62 5.03 -106.82 -0.54 3.09 16 18 C -0.47 -10.34 5.25 -37.75 -0.20 -10.54 16 19 H 0.14 3.28 4.48 -52.49 -0.24 3.04 16 20 C 0.09 1.93 4.70 -17.34 -0.08 1.85 16 21 N -0.77 -16.03 13.93 55.55 0.77 -15.26 16 22 Si 0.89 16.66 24.00 -169.99 -4.08 12.58 16 23 H -0.27 -5.09 6.73 56.52 0.38 -4.71 16 24 H -0.28 -4.94 7.11 56.52 0.40 -4.54 16 25 H -0.24 -4.59 6.82 56.52 0.39 -4.20 16 26 H 0.06 0.72 7.23 -51.93 -0.38 0.35 16 27 H 0.05 0.57 7.23 -51.93 -0.38 0.19 16 28 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.05 0.57 7.23 -51.93 -0.38 0.20 16 31 H 0.06 0.66 6.58 -51.93 -0.34 0.32 16 32 H 0.11 1.17 8.14 -51.93 -0.42 0.74 16 33 H 0.12 1.29 8.14 -51.93 -0.42 0.87 16 34 H 0.08 1.30 5.68 -51.93 -0.30 1.01 16 35 H 0.10 1.72 6.08 -51.93 -0.32 1.40 16 36 H 0.41 5.19 6.51 -34.47 -0.22 4.97 16 37 H 0.11 2.10 7.32 -52.49 -0.38 1.71 16 38 H 0.10 1.66 8.06 -52.48 -0.42 1.23 16 39 H 0.10 1.63 8.06 -52.49 -0.42 1.21 16 40 H 0.11 2.20 4.82 -52.49 -0.25 1.95 16 41 H 0.29 5.44 8.30 -40.82 -0.34 5.11 16 LS Contribution 335.16 15.07 5.05 5.05 Total: -1.00 -27.59 335.16 -7.23 -34.82 By element: Atomic # 1 Polarization: 16.37 SS G_CDS: -4.88 Total: 11.48 kcal Atomic # 6 Polarization: -31.07 SS G_CDS: -2.41 Total: -33.47 kcal Atomic # 7 Polarization: -40.27 SS G_CDS: 1.50 Total: -38.77 kcal Atomic # 8 Polarization: -42.34 SS G_CDS: -1.83 Total: -44.17 kcal Atomic # 14 Polarization: 16.66 SS G_CDS: -4.08 Total: 12.58 kcal Atomic # 16 Polarization: 53.05 SS G_CDS: -0.58 Total: 52.47 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -27.59 -7.23 -34.82 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601436105.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.148 kcal (2) G-P(sol) polarization free energy of solvation -27.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds