Wall clock time and date at job start Tue Mar 31 2020 13:44:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47169 * 2 1 4 4 C 1.52995 * 109.47047 * 239.99487 * 2 1 3 5 5 C 1.47205 * 109.47160 * 60.00722 * 4 2 1 6 6 N 3.43546 * 83.99743 * 278.55149 * 2 1 3 7 7 C 1.52999 * 109.46854 * 119.99715 * 2 1 3 8 8 N 1.46502 * 109.47514 * 299.99742 * 7 2 1 9 9 S 1.65597 * 120.00255 * 163.78370 * 8 7 2 10 10 O 1.42106 * 106.40079 * 179.14549 * 9 8 7 11 11 O 1.42105 * 106.40372 * 312.06186 * 9 8 7 12 12 C 1.76193 * 107.21829 * 65.60568 * 9 8 7 13 13 C 1.37631 * 120.13186 * 112.30178 * 12 9 8 14 14 C 1.38608 * 120.25334 * 179.97438 * 13 12 9 15 15 C 1.38661 * 120.50026 * 0.02562 * 14 13 12 16 16 C 1.37598 * 120.24867 * 0.02562 * 15 14 13 17 17 C 1.40706 * 120.12533 * 292.02673 * 12 9 8 18 18 C 1.41392 * 120.24568 * 359.97438 * 17 12 9 19 19 H 1.08000 * 119.99862 * 328.02712 * 18 17 12 20 20 C 1.39938 * 120.00268 * 148.02643 * 18 17 12 21 21 N 1.30826 * 120.00202 * 163.86695 * 20 18 17 22 22 Si 1.86800 * 119.99989 * 343.87159 * 20 18 17 23 23 H 1.48496 * 109.47319 * 94.88900 * 22 20 18 24 24 H 1.48496 * 109.47332 * 214.89137 * 22 20 18 25 25 H 1.48499 * 109.47103 * 334.88855 * 22 20 18 26 26 H 1.09003 * 109.47082 * 300.00420 * 1 2 3 27 27 H 1.09003 * 109.46866 * 60.00128 * 1 2 3 28 28 H 1.08997 * 109.47414 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.47069 * 180.02562 * 3 2 1 30 30 H 1.09003 * 109.47122 * 299.99715 * 3 2 1 31 31 H 1.08993 * 109.47375 * 59.99897 * 3 2 1 32 32 H 1.09006 * 109.47262 * 179.97438 * 4 2 1 33 33 H 1.08997 * 109.47311 * 300.00427 * 4 2 1 34 34 H 1.08997 * 109.47497 * 179.97438 * 7 2 1 35 35 H 1.09002 * 109.47469 * 59.99921 * 7 2 1 36 36 H 0.97005 * 119.99350 * 343.51429 * 8 7 2 37 37 H 1.08001 * 119.87639 * 359.97438 * 13 12 9 38 38 H 1.08005 * 119.75626 * 179.97438 * 14 13 12 39 39 H 1.08001 * 119.87678 * 179.97438 * 15 14 13 40 40 H 1.07995 * 120.12713 * 179.97438 * 16 15 14 41 41 H 0.97000 * 119.99965 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 1.5494 -0.0274 -2.4511 6 7 1.1707 0.5080 -3.3786 7 6 2.0399 -0.7212 1.2493 8 7 1.5516 -0.0305 2.4455 9 16 1.5978 -0.7894 3.9166 10 8 1.0810 0.1369 4.8623 11 8 1.0483 -2.0847 3.7174 12 6 3.2944 -1.0265 4.3282 13 6 3.8525 -0.3385 5.3815 14 6 5.1869 -0.5234 5.7079 15 6 5.9745 -1.4013 4.9788 16 6 5.4381 -2.0990 3.9211 17 6 4.0827 -1.9243 3.5849 18 6 3.5187 -2.6414 2.5047 19 1 2.4783 -2.9300 2.5328 20 6 4.3084 -2.9771 1.3994 21 7 3.9006 -3.8919 0.5577 22 14 5.9449 -2.1191 1.1256 23 1 7.0371 -2.9379 1.7103 24 1 6.1781 -1.9509 -0.3313 25 1 5.9207 -0.7863 1.7800 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 3.1301 1.4425 -0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 1.9563 0.8899 32 1 3.1300 -0.7210 -1.2494 33 1 1.6766 -1.7490 -1.2491 34 1 3.1299 -0.7217 1.2492 35 1 1.6766 -1.7489 1.2494 36 1 1.2050 0.8728 2.3763 37 1 3.2484 0.3482 5.9560 38 1 5.6166 0.0210 6.5358 39 1 7.0132 -1.5374 5.2416 40 1 6.0535 -2.7819 3.3543 41 1 4.4478 -4.1244 -0.2087 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601436105.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:44:00 Heat of formation + Delta-G solvation = -59.805364 kcal Electronic energy + Delta-G solvation = -26398.994986 eV Core-core repulsion = 22790.519724 eV Total energy + Delta-G solvation = -3608.475261 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 322.114 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -39.83014 -39.42402 -38.02455 -37.14206 -36.60927 -35.57770 -34.07565 -32.36884 -31.72525 -29.19901 -28.14753 -27.37938 -26.49414 -23.70111 -22.83526 -20.62783 -20.18957 -19.37672 -18.76978 -18.09463 -17.99335 -17.03316 -16.71152 -16.11588 -15.96727 -15.82336 -15.61906 -15.27424 -15.11671 -14.86535 -14.44758 -14.31892 -13.88920 -13.67636 -13.55398 -13.52094 -13.29780 -13.03011 -12.95234 -12.88518 -12.81388 -12.69673 -12.60529 -12.35309 -12.29652 -12.07278 -11.73024 -11.71313 -11.60475 -11.41271 -11.15245 -10.92876 -10.09579 -9.87109 -9.48915 -8.85891 -6.57563 -0.11114 0.42847 0.86709 1.35499 1.45926 1.55755 1.77961 1.84043 2.17193 2.43580 2.59391 3.00636 3.06090 3.43244 3.77172 3.85300 3.89881 4.03884 4.28876 4.36925 4.41410 4.64177 4.68664 4.76291 4.78483 4.83049 4.85802 4.96669 5.00658 5.05666 5.13301 5.19655 5.31133 5.32786 5.46712 5.47638 5.48128 5.63446 5.80110 5.92121 6.18849 6.39770 6.42124 6.61187 6.64476 6.81609 8.15122 Molecular weight = 322.11amu Principal moments of inertia in cm(-1) A = 0.012289 B = 0.006810 C = 0.005177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2278.003420 B = 4110.815087 C = 5407.438568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.062 4.062 3 C -0.148 4.148 4 C -0.024 4.024 5 C 0.246 3.754 6 N -0.490 5.490 7 C 0.139 3.861 8 N -1.103 6.103 9 S 2.723 3.277 10 O -1.010 7.010 11 O -0.999 6.999 12 C -0.785 4.785 13 C 0.002 3.998 14 C -0.255 4.255 15 C -0.046 4.046 16 C -0.257 4.257 17 C 0.147 3.853 18 C -0.482 4.482 19 H 0.114 0.886 20 C 0.080 3.920 21 N -0.792 5.792 22 Si 0.925 3.075 23 H -0.271 1.271 24 H -0.260 1.260 25 H -0.246 1.246 26 H 0.068 0.932 27 H 0.054 0.946 28 H 0.062 0.938 29 H 0.068 0.932 30 H 0.055 0.945 31 H 0.071 0.929 32 H 0.125 0.875 33 H 0.126 0.874 34 H 0.073 0.927 35 H 0.080 0.920 36 H 0.420 0.580 37 H 0.127 0.873 38 H 0.132 0.868 39 H 0.131 0.869 40 H 0.106 0.894 41 H 0.303 0.697 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.787 6.372 -1.865 6.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.065 4.065 3 C -0.206 4.206 4 C -0.064 4.064 5 C -0.071 4.071 6 N -0.169 5.169 7 C 0.013 3.987 8 N -0.865 5.865 9 S 2.819 3.181 10 O -1.001 7.001 11 O -0.989 6.989 12 C -0.878 4.878 13 C -0.017 4.017 14 C -0.275 4.275 15 C -0.064 4.064 16 C -0.276 4.276 17 C 0.142 3.858 18 C -0.509 4.509 19 H 0.131 0.869 20 C -0.142 4.142 21 N -0.414 5.414 22 Si 0.748 3.252 23 H -0.198 1.198 24 H -0.185 1.185 25 H -0.169 1.169 26 H 0.087 0.913 27 H 0.073 0.927 28 H 0.081 0.919 29 H 0.087 0.913 30 H 0.074 0.926 31 H 0.090 0.910 32 H 0.143 0.857 33 H 0.144 0.856 34 H 0.092 0.908 35 H 0.098 0.902 36 H 0.257 0.743 37 H 0.145 0.855 38 H 0.150 0.850 39 H 0.149 0.851 40 H 0.124 0.876 41 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 0.482 6.545 -3.030 7.229 hybrid contribution 1.450 -0.006 0.167 1.460 sum 1.933 6.539 -2.863 7.395 Atomic orbital electron populations 1.21957 0.93414 1.02835 1.02191 1.20722 0.96870 0.96378 0.92518 1.21991 1.02140 0.94025 1.02420 1.19543 1.03413 0.99431 0.84051 1.29257 0.91804 0.92265 0.93744 1.81210 1.11175 1.11374 1.13101 1.21691 0.99284 0.95599 0.82124 1.55150 1.79700 1.28850 1.22764 1.00254 0.73851 0.72208 0.71803 1.93435 1.80066 1.64841 1.61728 1.93470 1.78332 1.41416 1.85649 1.30169 1.25457 1.16683 1.15503 1.20708 0.95431 0.93301 0.92285 1.20950 0.94461 1.06737 1.05355 1.21257 0.99264 0.92802 0.93105 1.21386 0.96939 1.06556 1.02733 1.17287 0.91484 0.86880 0.90111 1.20370 1.01498 1.28502 1.00503 0.86894 1.26446 1.00412 0.92724 0.94665 1.69671 1.39268 1.21043 1.11449 0.86092 0.78984 0.81711 0.78392 1.19751 1.18550 1.16944 0.91319 0.92659 0.91912 0.91296 0.92600 0.90961 0.85745 0.85580 0.90837 0.90180 0.74309 0.85543 0.85004 0.85113 0.87627 0.88559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.26 8.05 71.98 0.58 -2.68 16 2 C -0.06 -1.42 0.57 -52.18 -0.03 -1.45 16 3 C -0.15 -3.01 8.05 71.98 0.58 -2.43 16 4 C -0.02 -0.51 4.79 28.79 0.14 -0.37 16 5 C 0.25 5.97 12.89 89.44 1.15 7.12 16 6 N -0.49 -14.27 18.54 20.01 0.37 -13.90 16 7 C 0.14 4.18 3.21 86.38 0.28 4.45 16 8 N -1.10 -33.71 5.31 -187.49 -1.00 -34.70 16 9 S 2.72 107.03 5.44 -56.49 -0.31 106.72 16 10 O -1.01 -41.34 16.97 -128.00 -2.17 -43.51 16 11 O -1.00 -46.03 14.95 -128.00 -1.91 -47.94 16 12 C -0.78 -32.99 5.96 22.73 0.14 -32.86 16 13 C 0.00 0.09 9.53 22.21 0.21 0.31 16 14 C -0.26 -9.12 10.05 22.46 0.23 -8.90 16 15 C -0.05 -1.68 10.02 22.22 0.22 -1.46 16 16 C -0.26 -10.70 7.12 22.73 0.16 -10.54 16 17 C 0.15 6.51 5.03 -21.29 -0.11 6.40 16 18 C -0.48 -21.60 5.25 23.46 0.12 -21.48 16 19 H 0.11 5.59 4.48 -2.91 -0.01 5.58 16 20 C 0.08 3.29 4.70 85.25 0.40 3.69 16 21 N -0.79 -32.72 13.93 21.82 0.30 -32.41 16 22 Si 0.92 32.98 24.00 68.60 1.65 34.63 16 23 H -0.27 -9.86 6.73 99.48 0.67 -9.19 16 24 H -0.26 -8.28 7.11 99.48 0.71 -7.57 16 25 H -0.25 -9.05 6.82 99.48 0.68 -8.37 16 26 H 0.07 1.45 7.23 -2.39 -0.02 1.43 16 27 H 0.05 1.18 7.23 -2.39 -0.02 1.16 16 28 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 29 H 0.07 1.35 8.14 -2.38 -0.02 1.33 16 30 H 0.05 1.11 7.23 -2.39 -0.02 1.10 16 31 H 0.07 1.33 6.58 -2.39 -0.02 1.32 16 32 H 0.12 2.38 8.14 -2.38 -0.02 2.36 16 33 H 0.13 2.60 8.14 -2.39 -0.02 2.58 16 34 H 0.07 2.34 5.68 -2.39 -0.01 2.33 16 35 H 0.08 2.79 6.08 -2.39 -0.01 2.78 16 36 H 0.42 10.24 6.51 -96.74 -0.63 9.61 16 37 H 0.13 4.47 7.32 -2.91 -0.02 4.45 16 38 H 0.13 3.83 8.06 -2.91 -0.02 3.81 16 39 H 0.13 3.86 8.06 -2.91 -0.02 3.84 16 40 H 0.11 4.31 4.82 -2.91 -0.01 4.29 16 41 H 0.30 11.03 8.30 -92.71 -0.77 10.27 16 Total: -1.00 -58.21 335.16 1.39 -56.82 By element: Atomic # 1 Polarization: 34.11 SS G_CDS: 0.39 Total: 34.50 kcal Atomic # 6 Polarization: -64.27 SS G_CDS: 4.07 Total: -60.19 kcal Atomic # 7 Polarization: -80.70 SS G_CDS: -0.32 Total: -81.02 kcal Atomic # 8 Polarization: -87.37 SS G_CDS: -4.09 Total: -91.45 kcal Atomic # 14 Polarization: 32.98 SS G_CDS: 1.65 Total: 34.63 kcal Atomic # 16 Polarization: 107.03 SS G_CDS: -0.31 Total: 106.72 kcal Total: -58.21 1.39 -56.82 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601436105.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.988 kcal (2) G-P(sol) polarization free energy of solvation -58.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.818 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds