Wall clock time and date at job start Tue Mar 31 2020 13:56:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47275 * 2 1 4 4 N 1.46502 * 109.47040 * 240.00151 * 2 1 3 5 5 C 1.34771 * 120.00078 * 59.99815 * 4 2 1 6 6 O 1.21274 * 120.00290 * 0.02562 * 5 4 2 7 7 C 1.50701 * 119.99984 * 179.97438 * 5 4 2 8 8 S 1.81002 * 109.47295 * 180.02562 * 7 5 4 9 9 C 1.76205 * 99.99965 * 180.02562 * 8 7 5 10 10 H 1.08000 * 120.00162 * 359.97438 * 9 8 7 11 11 C 1.38804 * 119.99676 * 180.02562 * 9 8 7 12 12 N 1.31628 * 120.00181 * 359.97438 * 11 9 8 13 13 Si 1.86802 * 119.99657 * 180.02562 * 11 9 8 14 14 H 1.48500 * 109.47197 * 59.99883 * 13 11 9 15 15 H 1.48498 * 109.46913 * 180.02562 * 13 11 9 16 16 H 1.48506 * 109.46768 * 299.99526 * 13 11 9 17 17 C 1.50701 * 109.47118 * 120.00168 * 2 1 3 18 18 O 1.21287 * 119.99646 * 265.00036 * 17 2 1 19 19 N 1.34773 * 119.99846 * 84.99740 * 17 2 1 20 20 C 1.39925 * 119.99621 * 184.59327 * 19 17 2 21 21 C 1.38879 * 120.07158 * 144.91681 * 20 19 17 22 22 C 1.38111 * 119.92935 * 179.97438 * 21 20 19 23 23 C 1.38281 * 120.07151 * 359.97438 * 22 21 20 24 24 C 1.38285 * 120.14114 * 0.03955 * 23 22 21 25 25 C 1.38115 * 120.07249 * 359.95549 * 24 23 22 26 26 H 1.08999 * 109.47009 * 300.00156 * 1 2 3 27 27 H 1.09004 * 109.47120 * 59.99965 * 1 2 3 28 28 H 1.09000 * 109.47352 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.46946 * 180.02562 * 3 2 1 30 30 H 1.08999 * 109.46648 * 299.99901 * 3 2 1 31 31 H 1.08994 * 109.46792 * 60.00160 * 3 2 1 32 32 H 0.97004 * 119.99923 * 240.00338 * 4 2 1 33 33 H 1.09000 * 109.47374 * 300.00485 * 7 5 4 34 34 H 1.09000 * 109.47060 * 60.00479 * 7 5 4 35 35 H 0.96998 * 119.99963 * 180.02562 * 12 11 9 36 36 H 0.96998 * 120.00240 * 4.59533 * 19 17 2 37 37 H 1.08001 * 120.03312 * 359.69930 * 21 20 19 38 38 H 1.07999 * 119.96514 * 179.97438 * 22 21 20 39 39 H 1.07996 * 119.92897 * 179.97438 * 23 22 21 40 40 H 1.07996 * 119.96192 * 179.97438 * 24 23 22 41 41 H 1.07994 * 120.03622 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 1.6927 -0.2301 -2.4203 6 8 0.9958 0.7561 -2.5316 7 6 2.1955 -0.9402 -3.6507 8 16 1.5926 -0.0866 -5.1286 9 6 2.3085 -1.0994 -6.3803 10 1 2.9116 -1.9522 -6.1056 11 6 2.0982 -0.8005 -7.7193 12 7 1.3636 0.2392 -8.0541 13 14 2.8566 -1.8745 -9.0463 14 1 2.3534 -3.2646 -8.9056 15 1 2.4850 -1.3459 -10.3833 16 1 4.3349 -1.8664 -8.9047 17 6 2.0323 -0.7104 1.2305 18 8 2.3207 -0.0748 2.2224 19 7 2.1610 -2.0520 1.2286 20 6 2.5349 -2.7205 2.3996 21 6 2.0126 -3.9762 2.6811 22 6 2.3842 -4.6336 3.8375 23 6 3.2757 -4.0431 4.7143 24 6 3.7973 -2.7928 4.4370 25 6 3.4299 -2.1302 3.2823 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 3.1300 1.4425 -0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 2.5759 -1.4793 -1.1072 33 1 3.2855 -0.9398 -3.6506 34 1 1.8325 -1.9680 -3.6509 35 1 1.2164 0.4478 -8.9899 36 1 1.9943 -2.5541 0.4156 37 1 1.3132 -4.4361 1.9987 38 1 1.9781 -5.6099 4.0572 39 1 3.5643 -4.5591 5.6180 40 1 4.4931 -2.3342 5.1240 41 1 3.8373 -1.1536 3.0665 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609376129.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:56:38 Heat of formation + Delta-G solvation = -40.193469 kcal Electronic energy + Delta-G solvation = -24093.852923 eV Core-core repulsion = 20486.228097 eV Total energy + Delta-G solvation = -3607.624826 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 322.114 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.31001 -39.66590 -38.60314 -35.56234 -35.15866 -32.47734 -32.01897 -31.21495 -29.90459 -28.67315 -27.34847 -25.53457 -24.70830 -23.13812 -22.13078 -20.91281 -19.57752 -18.79915 -17.87051 -17.56668 -16.63332 -16.22355 -15.82086 -15.37436 -15.09086 -14.84756 -14.68400 -14.48395 -14.14169 -14.05685 -13.68021 -13.42162 -13.36545 -12.98128 -12.70943 -12.49125 -12.29803 -12.16783 -11.98288 -11.77140 -11.59019 -11.31373 -11.09242 -11.07356 -10.82217 -10.72844 -10.18795 -9.87834 -9.33972 -9.22651 -9.20876 -9.09753 -8.51435 -8.31406 -6.56078 -6.26471 -3.97685 0.92020 1.09708 2.09875 2.55870 2.86630 2.92142 3.20165 3.23030 3.26135 3.50381 3.54933 4.15326 4.17210 4.58139 4.64879 4.74186 4.82793 4.85298 5.01954 5.08926 5.09297 5.21560 5.24724 5.46386 5.57997 5.62198 5.70167 5.72104 5.77964 5.82429 5.95459 6.00080 6.03721 6.14094 6.17107 6.23744 6.28583 6.38218 6.70641 6.92253 7.43769 7.54650 7.65190 8.29945 8.41955 9.18949 10.80796 Molecular weight = 322.11amu Principal moments of inertia in cm(-1) A = 0.019474 B = 0.002560 C = 0.002348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1437.442441 B =10933.650468 C =11921.998179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.168 3.832 3 C -0.152 4.152 4 N -0.738 5.738 5 C 0.540 3.460 6 O -0.503 6.503 7 C -0.156 4.156 8 S -0.055 6.055 9 C -0.538 4.538 10 H 0.072 0.928 11 C 0.074 3.926 12 N -0.867 5.867 13 Si 0.919 3.081 14 H -0.274 1.274 15 H -0.283 1.283 16 H -0.274 1.274 17 C 0.522 3.478 18 O -0.507 6.507 19 N -0.674 5.674 20 C 0.143 3.857 21 C -0.144 4.144 22 C -0.102 4.102 23 C -0.136 4.136 24 C -0.103 4.103 25 C -0.121 4.121 26 H 0.069 0.931 27 H 0.100 0.900 28 H 0.059 0.941 29 H 0.058 0.942 30 H 0.093 0.907 31 H 0.073 0.927 32 H 0.395 0.605 33 H 0.091 0.909 34 H 0.091 0.909 35 H 0.269 0.731 36 H 0.412 0.588 37 H 0.126 0.874 38 H 0.126 0.874 39 H 0.122 0.878 40 H 0.125 0.875 41 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.650 -8.695 23.138 24.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.079 3.921 3 C -0.211 4.211 4 N -0.396 5.396 5 C 0.327 3.673 6 O -0.377 6.377 7 C -0.306 4.306 8 S 0.171 5.829 9 C -0.686 4.686 10 H 0.090 0.910 11 C -0.135 4.135 12 N -0.502 5.502 13 Si 0.745 3.255 14 H -0.199 1.199 15 H -0.208 1.208 16 H -0.199 1.199 17 C 0.308 3.692 18 O -0.379 6.379 19 N -0.320 5.320 20 C 0.049 3.951 21 C -0.164 4.164 22 C -0.121 4.121 23 C -0.155 4.155 24 C -0.121 4.121 25 C -0.141 4.141 26 H 0.088 0.912 27 H 0.118 0.882 28 H 0.078 0.922 29 H 0.077 0.923 30 H 0.112 0.888 31 H 0.092 0.908 32 H 0.230 0.770 33 H 0.109 0.891 34 H 0.109 0.891 35 H 0.079 0.921 36 H 0.249 0.751 37 H 0.144 0.856 38 H 0.144 0.856 39 H 0.140 0.860 40 H 0.143 0.857 41 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 1.571 -6.396 23.479 24.385 hybrid contribution 1.493 -2.625 -1.075 3.206 sum 3.064 -9.021 22.404 24.346 Atomic orbital electron populations 1.22225 0.91443 1.03133 1.05167 1.20505 0.96400 0.93908 0.81300 1.22105 1.01427 0.92894 1.04649 1.46236 1.55684 1.32660 1.05057 1.20289 0.79433 0.84292 0.83309 1.90654 1.35978 1.25071 1.85950 1.23564 1.04576 1.03984 0.98484 1.85396 1.67463 1.38337 0.91695 1.22818 1.37518 1.15664 0.92589 0.90962 1.24989 0.95015 0.95560 0.97956 1.69997 1.36171 1.25690 1.18350 0.86227 0.79456 0.80068 0.79772 1.19929 1.20791 1.19931 1.20880 0.76606 0.81568 0.90099 1.90716 1.47058 1.65647 1.34488 1.43655 1.68440 1.07625 1.12292 1.17804 0.95923 0.92895 0.88434 1.20959 1.01421 0.95160 0.98889 1.20955 0.97640 0.99778 0.93728 1.21170 0.98534 0.95829 0.99925 1.21093 0.99537 0.94775 0.96741 1.21324 0.96564 1.01253 0.94913 0.91163 0.88160 0.92178 0.92257 0.88799 0.90776 0.77032 0.89087 0.89095 0.92070 0.75135 0.85575 0.85629 0.85979 0.85692 0.84333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.90 8.38 37.16 0.31 -1.59 16 2 C 0.17 2.00 0.99 -132.97 -0.13 1.87 16 3 C -0.15 -1.99 7.93 37.16 0.29 -1.70 16 4 N -0.74 -8.77 4.86 -48.68 -0.24 -9.01 16 5 C 0.54 8.91 7.27 -10.99 -0.08 8.83 16 6 O -0.50 -9.96 12.07 5.56 0.07 -9.89 16 7 C -0.16 -2.87 6.16 36.01 0.22 -2.64 16 8 S -0.06 -1.43 20.57 -107.50 -2.21 -3.64 16 9 C -0.54 -14.79 9.50 30.94 0.29 -14.49 16 10 H 0.07 1.87 7.80 -52.49 -0.41 1.46 16 11 C 0.07 2.07 5.49 -17.43 -0.10 1.97 16 12 N -0.87 -25.53 13.22 55.49 0.73 -24.80 16 13 Si 0.92 20.90 29.55 -169.99 -5.02 15.87 16 14 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 15 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 16 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 17 C 0.52 5.99 6.49 -10.99 -0.07 5.92 16 18 O -0.51 -7.11 13.53 5.55 0.08 -7.03 16 19 N -0.67 -6.18 5.10 -9.86 -0.05 -6.23 16 20 C 0.14 1.41 6.30 -83.69 -0.53 0.88 16 21 C -0.14 -1.18 9.97 -39.39 -0.39 -1.57 16 22 C -0.10 -0.76 10.04 -39.61 -0.40 -1.16 16 23 C -0.14 -1.03 10.04 -39.55 -0.40 -1.43 16 24 C -0.10 -0.89 10.04 -39.61 -0.40 -1.29 16 25 C -0.12 -1.27 8.70 -39.39 -0.34 -1.61 16 26 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.10 1.42 6.17 -51.93 -0.32 1.10 16 28 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 29 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.09 1.42 6.17 -51.93 -0.32 1.10 16 31 H 0.07 0.91 7.87 -51.93 -0.41 0.50 16 32 H 0.40 3.56 7.16 -40.82 -0.29 3.26 16 33 H 0.09 1.56 8.14 -51.92 -0.42 1.14 16 34 H 0.09 1.51 8.14 -51.92 -0.42 1.09 16 35 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 36 H 0.41 2.82 7.42 -40.82 -0.30 2.51 16 37 H 0.13 0.80 8.06 -52.49 -0.42 0.38 16 38 H 0.13 0.65 8.06 -52.49 -0.42 0.22 16 39 H 0.12 0.65 8.06 -52.49 -0.42 0.23 16 40 H 0.13 0.85 8.06 -52.49 -0.42 0.43 16 41 H 0.14 1.63 6.23 -52.49 -0.33 1.30 16 LS Contribution 357.60 15.07 5.39 5.39 Total: -1.00 -33.66 357.60 -8.29 -41.95 By element: Atomic # 1 Polarization: 10.71 SS G_CDS: -5.32 Total: 5.39 kcal Atomic # 6 Polarization: -6.29 SS G_CDS: -1.71 Total: -8.00 kcal Atomic # 7 Polarization: -40.48 SS G_CDS: 0.45 Total: -40.03 kcal Atomic # 8 Polarization: -17.07 SS G_CDS: 0.14 Total: -16.93 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.87 kcal Atomic # 16 Polarization: -1.43 SS G_CDS: -2.21 Total: -3.64 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -33.66 -8.29 -41.95 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609376129.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.760 kcal (2) G-P(sol) polarization free energy of solvation -33.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds