Wall clock time and date at job start Tue Mar 31 2020 12:38:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38301 * 119.92022 * 2 1 4 4 C 1.38080 * 120.07869 * 180.02562 * 3 2 1 5 5 C 1.38980 * 119.92058 * 359.97438 * 4 3 2 6 6 S 1.76199 * 120.08104 * 179.97438 * 5 4 3 7 7 C 1.81405 * 102.99690 * 180.02562 * 6 5 4 8 8 C 1.50705 * 109.46754 * 180.02562 * 7 6 5 9 9 O 1.21289 * 120.00023 * 359.97438 * 8 7 6 10 10 N 1.34772 * 119.99986 * 180.02562 * 8 7 6 11 11 N 1.40103 * 120.00059 * 180.02562 * 10 8 7 12 12 C 1.34781 * 119.99885 * 180.02562 * 11 10 8 13 13 O 1.21281 * 119.99890 * 359.97438 * 12 11 10 14 14 C 1.50695 * 119.99849 * 179.97438 * 12 11 10 15 15 C 1.53000 * 109.47344 * 179.97438 * 14 12 11 16 16 C 1.50695 * 109.47344 * 180.02562 * 15 14 12 17 17 H 1.08003 * 120.00041 * 0.02562 * 16 15 14 18 18 C 1.37878 * 120.00082 * 179.97438 * 16 15 14 19 19 N 1.31510 * 120.00222 * 179.97438 * 18 16 15 20 20 Si 1.86798 * 119.99872 * 0.02562 * 18 16 15 21 21 H 1.48501 * 109.47340 * 89.99807 * 20 18 16 22 22 H 1.48496 * 109.47092 * 209.99598 * 20 18 16 23 23 H 1.48502 * 109.47120 * 329.99760 * 20 18 16 24 24 C 1.38977 * 119.83588 * 0.25798 * 5 4 3 25 25 C 1.38084 * 119.92020 * 359.46650 * 24 5 4 26 26 H 1.08995 * 109.47129 * 89.99480 * 1 2 3 27 27 H 1.09004 * 109.47114 * 210.00145 * 1 2 3 28 28 H 1.08995 * 109.46747 * 329.99686 * 1 2 3 29 29 H 1.07991 * 119.96023 * 359.97438 * 3 2 1 30 30 H 1.07998 * 120.03913 * 179.97438 * 4 3 2 31 31 H 1.09000 * 109.47133 * 299.99798 * 7 6 5 32 32 H 1.08998 * 109.47280 * 60.00548 * 7 6 5 33 33 H 0.97004 * 120.00165 * 359.97438 * 10 8 7 34 34 H 0.96996 * 120.00120 * 359.97438 * 11 10 8 35 35 H 1.09004 * 109.46870 * 299.99969 * 14 12 11 36 36 H 1.09002 * 109.47357 * 59.99861 * 14 12 11 37 37 H 1.09004 * 109.46562 * 300.00244 * 15 14 12 38 38 H 1.08994 * 109.47047 * 59.99434 * 15 14 12 39 39 H 0.97002 * 120.00061 * 180.02562 * 19 18 16 40 40 H 1.08005 * 120.03951 * 179.72889 * 24 5 4 41 41 H 1.08001 * 119.95953 * 180.25046 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1969 1.1987 0.0000 4 6 3.5777 1.2025 -0.0005 5 6 4.2743 -0.0001 -0.0005 6 16 6.0362 -0.0002 -0.0019 7 6 6.4442 -1.7678 -0.0022 8 6 7.9416 -1.9377 -0.0027 9 8 8.6626 -0.9623 -0.0033 10 7 8.4796 -3.1734 -0.0036 11 7 9.8717 -3.3313 -0.0035 12 6 10.4097 -4.5671 -0.0049 13 8 9.6887 -5.5423 -0.0056 14 6 11.9070 -4.7370 -0.0054 15 6 12.2512 -6.2278 -0.0063 16 6 13.7485 -6.3977 -0.0062 17 1 14.3906 -5.5292 -0.0051 18 6 14.2989 -7.6618 -0.0064 19 7 15.6057 -7.8101 -0.0068 20 14 13.1885 -9.1639 -0.0075 21 1 12.8949 -9.5615 -1.4079 22 1 13.8689 -10.2830 0.6924 23 1 11.9189 -8.8415 0.6921 24 6 3.5776 -1.2027 -0.0054 25 6 2.1968 -1.1987 0.0009 26 1 -0.3633 0.0001 -1.0276 27 1 -0.3633 -0.8900 0.5139 28 1 -0.3633 0.8899 0.5139 29 1 1.6550 2.1328 -0.0004 30 1 4.1157 2.1389 -0.0010 31 1 6.0259 -2.2374 0.8881 32 1 6.0246 -2.2374 -0.8919 33 1 7.9030 -3.9534 -0.0034 34 1 10.4483 -2.5514 -0.0032 35 1 12.3257 -4.2665 -0.8950 36 1 12.3262 -4.2683 0.8850 37 1 11.8324 -6.6978 0.8836 38 1 11.8319 -6.6969 -0.8963 39 1 15.9929 -8.6995 -0.0073 40 1 4.1156 -2.1392 -0.0099 41 1 1.6548 -2.1329 0.0012 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000812450430.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:38:45 Heat of formation + Delta-G solvation = -24.055194 kcal Electronic energy + Delta-G solvation = -22516.462120 eV Core-core repulsion = 18909.537102 eV Total energy + Delta-G solvation = -3606.925018 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 322.114 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.44230 -39.59949 -38.97354 -35.45664 -33.62681 -33.36162 -32.40716 -31.61845 -31.18434 -29.47389 -27.47701 -26.06237 -23.24838 -22.07050 -21.86202 -21.69902 -20.00794 -18.40114 -18.04889 -17.55108 -16.83535 -16.23959 -16.15353 -15.83430 -15.62109 -15.21068 -15.11456 -14.45454 -14.30763 -14.14363 -13.85984 -13.72347 -13.62821 -13.50223 -12.88574 -12.75344 -12.67826 -12.63687 -11.90797 -11.55024 -11.53595 -11.37202 -11.03747 -10.62548 -10.59181 -10.31259 -10.17441 -9.93591 -9.90292 -9.60660 -9.44667 -9.26898 -8.57547 -8.46840 -7.72759 -6.08527 -4.08359 0.73010 0.74840 0.91658 1.83881 1.91916 2.01416 2.83693 3.20854 3.32820 3.39958 3.48742 3.70153 4.30184 4.36109 4.36858 4.42342 4.44848 4.47258 4.62115 4.81495 4.90296 5.12490 5.15369 5.18297 5.22305 5.26452 5.53088 5.55755 5.80102 5.85445 5.89456 5.93035 6.12718 6.42369 6.45521 6.52072 6.60835 7.23565 7.30934 7.44300 7.65314 7.71936 8.35950 8.46446 8.93888 9.53448 11.04090 Molecular weight = 322.11amu Principal moments of inertia in cm(-1) A = 0.033264 B = 0.001768 C = 0.001682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 841.559006 B =15834.012077 C =16644.519924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.094 4.094 3 C -0.101 4.101 4 C -0.094 4.094 5 C -0.106 4.106 6 S -0.022 6.022 7 C -0.146 4.146 8 C 0.530 3.470 9 O -0.522 6.522 10 N -0.517 5.517 11 N -0.533 5.533 12 C 0.514 3.486 13 O -0.539 6.539 14 C -0.111 4.111 15 C 0.003 3.997 16 C -0.528 4.528 17 H 0.075 0.925 18 C 0.071 3.929 19 N -0.901 5.901 20 Si 0.878 3.122 21 H -0.276 1.276 22 H -0.288 1.288 23 H -0.262 1.262 24 C -0.133 4.133 25 C -0.100 4.100 26 H 0.071 0.929 27 H 0.066 0.934 28 H 0.067 0.933 29 H 0.127 0.873 30 H 0.129 0.871 31 H 0.123 0.877 32 H 0.123 0.877 33 H 0.432 0.568 34 H 0.432 0.568 35 H 0.094 0.906 36 H 0.095 0.905 37 H 0.025 0.975 38 H 0.021 0.979 39 H 0.264 0.736 40 H 0.123 0.877 41 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.436 17.745 0.027 35.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.096 4.096 3 C -0.121 4.121 4 C -0.118 4.118 5 C -0.219 4.219 6 S 0.221 5.779 7 C -0.298 4.298 8 C 0.313 3.687 9 O -0.397 6.397 10 N -0.263 5.263 11 N -0.284 5.284 12 C 0.303 3.697 13 O -0.413 6.413 14 C -0.152 4.152 15 C -0.035 4.035 16 C -0.566 4.566 17 H 0.093 0.907 18 C -0.131 4.131 19 N -0.539 5.539 20 Si 0.705 3.295 21 H -0.202 1.202 22 H -0.214 1.214 23 H -0.186 1.186 24 C -0.156 4.156 25 C -0.120 4.120 26 H 0.089 0.911 27 H 0.085 0.915 28 H 0.086 0.914 29 H 0.145 0.855 30 H 0.147 0.853 31 H 0.141 0.859 32 H 0.141 0.859 33 H 0.274 0.726 34 H 0.274 0.726 35 H 0.113 0.887 36 H 0.113 0.887 37 H 0.044 0.956 38 H 0.039 0.961 39 H 0.074 0.926 40 H 0.141 0.859 41 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -29.371 18.446 0.030 34.683 hybrid contribution -1.415 -2.021 -0.032 2.467 sum -30.786 16.425 -0.001 34.893 Atomic orbital electron populations 1.20797 0.90970 1.02903 1.02432 1.19977 0.96269 0.93119 1.00271 1.20986 0.93494 0.97795 0.99811 1.20720 0.93961 0.96415 1.00725 1.22091 0.98133 0.96677 1.05016 1.86269 0.96137 1.03473 1.92028 1.23659 0.96360 1.01283 1.08518 1.19609 0.88964 0.82340 0.77750 1.90796 1.61552 1.37868 1.49509 1.44627 0.97576 1.08949 1.75173 1.45539 0.93842 1.10718 1.78320 1.22116 0.92796 0.80340 0.74434 1.90678 1.62854 1.38367 1.49385 1.21708 0.85753 1.03482 1.04303 1.19404 0.97361 0.88862 0.97905 1.21063 0.89533 0.94207 1.51806 0.90730 1.24959 0.94873 0.99043 0.94243 1.69904 1.10183 1.23167 1.50642 0.86798 0.81490 0.82513 0.78734 1.20224 1.21372 1.18602 1.21172 0.95002 0.96391 1.03080 1.20961 0.93582 0.97815 0.99595 0.91081 0.91474 0.91448 0.85483 0.85318 0.85909 0.85907 0.72633 0.72580 0.88741 0.88716 0.95617 0.96059 0.92618 0.85884 0.85677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.48 10.01 36.01 0.36 -0.12 16 2 C -0.09 -0.61 5.88 -104.57 -0.62 -1.22 16 3 C -0.10 -0.68 9.69 -39.62 -0.38 -1.06 16 4 C -0.09 -0.74 9.79 -39.36 -0.39 -1.13 16 5 C -0.11 -0.91 6.11 -39.03 -0.24 -1.14 16 6 S -0.02 -0.21 21.06 -107.50 -2.26 -2.48 16 7 C -0.15 -1.10 4.82 36.01 0.17 -0.93 16 8 C 0.53 5.84 7.97 -10.99 -0.09 5.75 16 9 O -0.52 -7.51 15.70 5.55 0.09 -7.42 16 10 N -0.52 -5.91 6.26 31.22 0.20 -5.72 16 11 N -0.53 -7.17 6.26 31.22 0.20 -6.98 16 12 C 0.51 8.61 7.95 -10.99 -0.09 8.52 16 13 O -0.54 -10.68 15.82 5.56 0.09 -10.59 16 14 C -0.11 -2.00 5.64 -27.89 -0.16 -2.16 16 15 C 0.00 0.07 3.33 -27.89 -0.09 -0.03 16 16 C -0.53 -14.63 9.66 -34.44 -0.33 -14.97 16 17 H 0.07 2.16 7.99 -52.48 -0.42 1.74 16 18 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 19 N -0.90 -27.39 13.96 55.43 0.77 -26.62 16 20 Si 0.88 21.94 27.47 -169.99 -4.67 17.27 16 21 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 22 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 23 H -0.26 -6.46 6.54 56.52 0.37 -6.09 16 24 C -0.13 -0.98 9.36 -39.36 -0.37 -1.35 16 25 C -0.10 -0.67 9.69 -39.61 -0.38 -1.06 16 26 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 27 H 0.07 0.24 8.08 -51.93 -0.42 -0.18 16 28 H 0.07 0.23 8.08 -51.93 -0.42 -0.19 16 29 H 0.13 0.58 8.06 -52.49 -0.42 0.16 16 30 H 0.13 0.87 8.06 -52.49 -0.42 0.45 16 31 H 0.12 0.66 7.76 -51.92 -0.40 0.26 16 32 H 0.12 0.66 7.74 -51.92 -0.40 0.26 16 33 H 0.43 4.33 8.00 -182.59 -1.46 2.87 16 34 H 0.43 5.26 8.00 -182.60 -1.46 3.80 16 35 H 0.09 1.55 8.14 -51.93 -0.42 1.13 16 36 H 0.09 1.56 8.14 -51.93 -0.42 1.13 16 37 H 0.03 0.63 7.16 -51.93 -0.37 0.26 16 38 H 0.02 0.51 7.53 -51.93 -0.39 0.12 16 39 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 40 H 0.12 0.68 5.88 -52.48 -0.31 0.37 16 41 H 0.13 0.61 8.06 -52.49 -0.42 0.18 16 LS Contribution 365.79 15.07 5.51 5.51 Total: -1.00 -35.21 365.79 -10.54 -45.75 By element: Atomic # 1 Polarization: 7.98 SS G_CDS: -7.76 Total: 0.22 kcal Atomic # 6 Polarization: -6.24 SS G_CDS: -2.70 Total: -8.94 kcal Atomic # 7 Polarization: -40.48 SS G_CDS: 1.16 Total: -39.32 kcal Atomic # 8 Polarization: -18.19 SS G_CDS: 0.18 Total: -18.02 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -4.67 Total: 17.27 kcal Atomic # 16 Polarization: -0.21 SS G_CDS: -2.26 Total: -2.48 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -35.21 -10.54 -45.75 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812450430.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.690 kcal (2) G-P(sol) polarization free energy of solvation -35.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.745 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds