Wall clock time and date at job start Tue Mar 31 2020 12:38:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38301 * 119.92022 * 2 1 4 4 C 1.38080 * 120.07869 * 180.02562 * 3 2 1 5 5 C 1.38980 * 119.92058 * 359.97438 * 4 3 2 6 6 S 1.76199 * 120.08104 * 179.97438 * 5 4 3 7 7 C 1.81405 * 102.99690 * 180.02562 * 6 5 4 8 8 C 1.50705 * 109.46754 * 180.02562 * 7 6 5 9 9 O 1.21289 * 120.00023 * 359.97438 * 8 7 6 10 10 N 1.34772 * 119.99986 * 180.02562 * 8 7 6 11 11 N 1.40103 * 120.00059 * 180.02562 * 10 8 7 12 12 C 1.34781 * 119.99885 * 180.02562 * 11 10 8 13 13 O 1.21281 * 119.99890 * 359.97438 * 12 11 10 14 14 C 1.50695 * 119.99849 * 179.97438 * 12 11 10 15 15 C 1.53000 * 109.47344 * 179.97438 * 14 12 11 16 16 C 1.50695 * 109.47344 * 180.02562 * 15 14 12 17 17 H 1.08003 * 120.00041 * 0.02562 * 16 15 14 18 18 C 1.37878 * 120.00082 * 179.97438 * 16 15 14 19 19 N 1.31510 * 120.00222 * 179.97438 * 18 16 15 20 20 Si 1.86798 * 119.99872 * 0.02562 * 18 16 15 21 21 H 1.48501 * 109.47340 * 89.99807 * 20 18 16 22 22 H 1.48496 * 109.47092 * 209.99598 * 20 18 16 23 23 H 1.48502 * 109.47120 * 329.99760 * 20 18 16 24 24 C 1.38977 * 119.83588 * 0.25798 * 5 4 3 25 25 C 1.38084 * 119.92020 * 359.46650 * 24 5 4 26 26 H 1.08995 * 109.47129 * 89.99480 * 1 2 3 27 27 H 1.09004 * 109.47114 * 210.00145 * 1 2 3 28 28 H 1.08995 * 109.46747 * 329.99686 * 1 2 3 29 29 H 1.07991 * 119.96023 * 359.97438 * 3 2 1 30 30 H 1.07998 * 120.03913 * 179.97438 * 4 3 2 31 31 H 1.09000 * 109.47133 * 299.99798 * 7 6 5 32 32 H 1.08998 * 109.47280 * 60.00548 * 7 6 5 33 33 H 0.97004 * 120.00165 * 359.97438 * 10 8 7 34 34 H 0.96996 * 120.00120 * 359.97438 * 11 10 8 35 35 H 1.09004 * 109.46870 * 299.99969 * 14 12 11 36 36 H 1.09002 * 109.47357 * 59.99861 * 14 12 11 37 37 H 1.09004 * 109.46562 * 300.00244 * 15 14 12 38 38 H 1.08994 * 109.47047 * 59.99434 * 15 14 12 39 39 H 0.97002 * 120.00061 * 180.02562 * 19 18 16 40 40 H 1.08005 * 120.03951 * 179.72889 * 24 5 4 41 41 H 1.08001 * 119.95953 * 180.25046 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1969 1.1987 0.0000 4 6 3.5777 1.2025 -0.0005 5 6 4.2743 -0.0001 -0.0005 6 16 6.0362 -0.0002 -0.0019 7 6 6.4442 -1.7678 -0.0022 8 6 7.9416 -1.9377 -0.0027 9 8 8.6626 -0.9623 -0.0033 10 7 8.4796 -3.1734 -0.0036 11 7 9.8717 -3.3313 -0.0035 12 6 10.4097 -4.5671 -0.0049 13 8 9.6887 -5.5423 -0.0056 14 6 11.9070 -4.7370 -0.0054 15 6 12.2512 -6.2278 -0.0063 16 6 13.7485 -6.3977 -0.0062 17 1 14.3906 -5.5292 -0.0051 18 6 14.2989 -7.6618 -0.0064 19 7 15.6057 -7.8101 -0.0068 20 14 13.1885 -9.1639 -0.0075 21 1 12.8949 -9.5615 -1.4079 22 1 13.8689 -10.2830 0.6924 23 1 11.9189 -8.8415 0.6921 24 6 3.5776 -1.2027 -0.0054 25 6 2.1968 -1.1987 0.0009 26 1 -0.3633 0.0001 -1.0276 27 1 -0.3633 -0.8900 0.5139 28 1 -0.3633 0.8899 0.5139 29 1 1.6550 2.1328 -0.0004 30 1 4.1157 2.1389 -0.0010 31 1 6.0259 -2.2374 0.8881 32 1 6.0246 -2.2374 -0.8919 33 1 7.9030 -3.9534 -0.0034 34 1 10.4483 -2.5514 -0.0032 35 1 12.3257 -4.2665 -0.8950 36 1 12.3262 -4.2683 0.8850 37 1 11.8324 -6.6978 0.8836 38 1 11.8319 -6.6969 -0.8963 39 1 15.9929 -8.6995 -0.0073 40 1 4.1156 -2.1392 -0.0099 41 1 1.6548 -2.1329 0.0012 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000812450430.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:38:44 Heat of formation + Delta-G solvation = -47.145589 kcal Electronic energy + Delta-G solvation = -22517.463394 eV Core-core repulsion = 18909.537102 eV Total energy + Delta-G solvation = -3607.926292 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 322.114 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.53245 -40.18619 -40.07891 -36.60190 -35.55252 -33.87045 -33.63543 -32.93616 -32.00840 -30.40243 -27.96327 -27.75149 -23.88997 -23.45971 -22.70432 -22.48841 -21.42129 -19.45926 -19.09648 -18.87296 -18.14741 -17.17055 -17.07882 -16.64972 -16.46463 -16.27931 -16.19510 -15.72263 -15.37093 -15.07454 -14.80372 -14.65517 -14.58211 -14.34348 -14.10509 -14.07495 -13.42542 -13.15885 -13.07598 -12.93928 -12.50062 -12.40281 -12.18384 -12.00644 -11.98199 -11.76894 -11.57911 -11.40638 -11.19980 -11.06927 -10.76817 -10.46219 -9.95192 -9.56489 -8.37423 -8.29831 -6.33515 0.04092 0.21319 0.41051 0.89537 1.07825 1.30126 1.35662 1.37953 1.51468 1.58407 2.36268 2.70712 2.78391 3.06168 3.39617 3.85206 3.85596 3.89349 3.97823 4.03750 4.11726 4.33781 4.41945 4.45374 4.46331 4.74079 4.78613 4.86973 4.93478 5.10610 5.21312 5.29508 5.32287 5.37355 5.43436 5.43995 5.56869 5.62576 5.66238 5.98911 6.23188 6.35438 6.67909 6.75208 7.19992 7.31852 8.85758 Molecular weight = 322.11amu Principal moments of inertia in cm(-1) A = 0.033264 B = 0.001768 C = 0.001682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 841.559006 B =15834.012077 C =16644.519924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.099 4.099 3 C -0.109 4.109 4 C -0.110 4.110 5 C -0.116 4.116 6 S -0.074 6.074 7 C -0.131 4.131 8 C 0.534 3.466 9 O -0.557 6.557 10 N -0.512 5.512 11 N -0.522 5.522 12 C 0.524 3.476 13 O -0.571 6.571 14 C -0.107 4.107 15 C 0.006 3.994 16 C -0.531 4.531 17 H 0.050 0.950 18 C 0.013 3.987 19 N -0.944 5.944 20 Si 0.940 3.060 21 H -0.269 1.269 22 H -0.282 1.282 23 H -0.256 1.256 24 C -0.139 4.139 25 C -0.109 4.109 26 H 0.078 0.922 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.145 0.855 30 H 0.130 0.870 31 H 0.150 0.850 32 H 0.150 0.850 33 H 0.440 0.560 34 H 0.439 0.561 35 H 0.110 0.890 36 H 0.110 0.890 37 H 0.016 0.984 38 H 0.015 0.985 39 H 0.267 0.733 40 H 0.141 0.859 41 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.414 17.537 0.004 37.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.101 4.101 3 C -0.128 4.128 4 C -0.133 4.133 5 C -0.229 4.229 6 S 0.169 5.831 7 C -0.283 4.283 8 C 0.319 3.681 9 O -0.434 6.434 10 N -0.260 5.260 11 N -0.272 5.272 12 C 0.313 3.687 13 O -0.448 6.448 14 C -0.149 4.149 15 C -0.033 4.033 16 C -0.569 4.569 17 H 0.068 0.932 18 C -0.185 4.185 19 N -0.585 5.585 20 Si 0.764 3.236 21 H -0.194 1.194 22 H -0.207 1.207 23 H -0.180 1.180 24 C -0.163 4.163 25 C -0.129 4.129 26 H 0.096 0.904 27 H 0.093 0.907 28 H 0.093 0.907 29 H 0.163 0.837 30 H 0.147 0.853 31 H 0.168 0.832 32 H 0.168 0.832 33 H 0.284 0.716 34 H 0.283 0.717 35 H 0.128 0.872 36 H 0.128 0.872 37 H 0.035 0.965 38 H 0.033 0.967 39 H 0.076 0.924 40 H 0.159 0.841 41 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -32.376 18.277 0.006 37.179 hybrid contribution -0.535 -1.816 -0.025 1.893 sum -32.911 16.461 -0.018 36.798 Atomic orbital electron populations 1.20843 0.89323 1.03742 1.03100 1.20338 0.97610 0.92994 0.99167 1.21252 0.93141 0.98920 0.99505 1.20915 0.94704 0.96539 1.01177 1.22055 0.96905 0.97462 1.06431 1.86435 0.98150 1.05839 1.92699 1.23645 0.93540 0.99971 1.11143 1.20176 0.90195 0.81407 0.76285 1.90792 1.62735 1.38938 1.50905 1.44755 0.96270 1.09692 1.75300 1.45155 0.95434 1.09914 1.76675 1.21539 0.91989 0.80786 0.74409 1.90668 1.63298 1.39544 1.51305 1.21491 0.87425 0.99959 1.05982 1.19248 0.94296 0.92732 0.96986 1.21421 0.91639 0.93402 1.50462 0.93162 1.25823 0.96124 1.02317 0.94242 1.70030 1.12005 1.24027 1.52425 0.85805 0.79679 0.78966 0.79114 1.19403 1.20724 1.18020 1.21450 0.95522 0.96655 1.02631 1.21280 0.93549 0.98801 0.99232 0.90388 0.90660 0.90657 0.83728 0.85251 0.83205 0.83192 0.71613 0.71703 0.87157 0.87181 0.96547 0.96668 0.92428 0.84114 0.83773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.68 10.01 71.24 0.71 0.04 16 2 C -0.10 -1.08 5.88 -19.83 -0.12 -1.20 16 3 C -0.11 -1.31 9.69 22.25 0.22 -1.09 16 4 C -0.11 -1.66 9.79 22.41 0.22 -1.44 16 5 C -0.12 -1.86 6.11 22.62 0.14 -1.72 16 6 S -0.07 -1.36 21.06 -56.49 -1.19 -2.55 16 7 C -0.13 -1.68 4.82 71.24 0.34 -1.33 16 8 C 0.53 10.78 7.97 87.66 0.70 11.48 16 9 O -0.56 -15.48 15.70 -3.06 -0.05 -15.53 16 10 N -0.51 -10.61 6.26 -173.53 -1.09 -11.70 16 11 N -0.52 -13.10 6.26 -173.53 -1.09 -14.18 16 12 C 0.52 16.68 7.95 87.65 0.70 17.37 16 13 O -0.57 -21.73 15.82 -3.03 -0.05 -21.78 16 14 C -0.11 -3.73 5.64 29.85 0.17 -3.56 16 15 C 0.01 0.26 3.33 29.85 0.10 0.36 16 16 C -0.53 -29.63 9.66 25.60 0.25 -29.38 16 17 H 0.05 2.97 7.99 -2.91 -0.02 2.94 16 18 C 0.01 0.73 5.47 84.66 0.46 1.20 16 19 N -0.94 -58.27 13.96 21.45 0.30 -57.98 16 20 Si 0.94 45.15 27.47 68.60 1.88 47.03 16 21 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 22 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 23 H -0.26 -11.98 6.54 99.48 0.65 -11.33 16 24 C -0.14 -1.76 9.36 22.41 0.21 -1.55 16 25 C -0.11 -1.22 9.69 22.25 0.22 -1.00 16 26 H 0.08 0.38 8.14 -2.39 -0.02 0.36 16 27 H 0.07 0.34 8.08 -2.38 -0.02 0.32 16 28 H 0.07 0.33 8.08 -2.39 -0.02 0.32 16 29 H 0.14 1.10 8.06 -2.92 -0.02 1.07 16 30 H 0.13 1.79 8.06 -2.91 -0.02 1.77 16 31 H 0.15 1.14 7.76 -2.39 -0.02 1.12 16 32 H 0.15 1.14 7.74 -2.39 -0.02 1.12 16 33 H 0.44 7.72 8.00 -213.31 -1.71 6.01 16 34 H 0.44 9.97 8.00 -213.32 -1.71 8.27 16 35 H 0.11 3.46 8.14 -2.38 -0.02 3.44 16 36 H 0.11 3.47 8.14 -2.39 -0.02 3.45 16 37 H 0.02 0.78 7.16 -2.39 -0.02 0.77 16 38 H 0.01 0.72 7.53 -2.39 -0.02 0.70 16 39 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 40 H 0.14 1.14 5.88 -2.91 -0.02 1.12 16 41 H 0.14 0.98 8.06 -2.91 -0.02 0.96 16 Total: -1.00 -76.35 365.79 0.64 -75.71 By element: Atomic # 1 Polarization: 15.21 SS G_CDS: -2.40 Total: 12.82 kcal Atomic # 6 Polarization: -16.15 SS G_CDS: 4.31 Total: -11.84 kcal Atomic # 7 Polarization: -81.99 SS G_CDS: -1.87 Total: -83.86 kcal Atomic # 8 Polarization: -37.22 SS G_CDS: -0.10 Total: -37.31 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 1.88 Total: 47.03 kcal Atomic # 16 Polarization: -1.36 SS G_CDS: -1.19 Total: -2.55 kcal Total: -76.35 0.64 -75.71 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812450430.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.566 kcal (2) G-P(sol) polarization free energy of solvation -76.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds