Wall clock time and date at job start Tue Mar 31 2020 12:44:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38394 * 120.40204 * 2 1 4 4 C 1.39926 * 118.35798 * 179.73857 * 3 2 1 5 5 C 1.43199 * 120.46686 * 180.23311 * 4 3 2 6 6 N 4.80149 * 136.43030 * 0.26230 * 2 1 3 7 7 C 1.39922 * 119.06499 * 0.52792 * 4 3 2 8 8 N 1.31321 * 120.70794 * 359.73228 * 7 4 3 9 9 C 1.32812 * 121.79806 * 359.97438 * 8 7 4 10 10 C 1.48115 * 119.56485 * 180.02562 * 9 8 7 11 11 O 1.21426 * 120.00294 * 173.81163 * 10 9 8 12 12 O 1.34678 * 120.00187 * 353.80496 * 10 9 8 13 13 C 1.45201 * 117.00469 * 180.02562 * 12 10 9 14 14 C 1.50698 * 109.47166 * 180.02562 * 13 12 10 15 15 C 1.38634 * 119.74958 * 269.72658 * 14 13 12 16 16 C 1.37613 * 120.24471 * 179.72322 * 15 14 13 17 17 C 1.40715 * 119.74940 * 0.57295 * 16 15 14 18 18 C 1.41397 * 120.24625 * 179.68169 * 17 16 15 19 19 H 1.08004 * 119.99494 * 152.87208 * 18 17 16 20 20 C 1.39939 * 119.99832 * 332.87647 * 18 17 16 21 21 N 1.30824 * 120.00326 * 335.98692 * 20 18 17 22 22 Si 1.86803 * 119.99766 * 155.98845 * 20 18 17 23 23 H 1.48505 * 109.46832 * 94.87713 * 22 20 18 24 24 H 1.48497 * 109.47017 * 214.87356 * 22 20 18 25 25 H 1.48498 * 109.47298 * 334.87934 * 22 20 18 26 26 C 1.40716 * 119.50917 * 359.70088 * 17 16 15 27 27 C 1.37621 * 119.74603 * 0.02562 * 26 17 16 28 28 H 1.08998 * 109.47098 * 262.51779 * 1 2 3 29 29 H 1.09001 * 109.46738 * 142.51376 * 1 2 3 30 30 H 1.08998 * 109.46511 * 22.52271 * 1 2 3 31 31 H 1.07998 * 120.81825 * 359.97438 * 3 2 1 32 32 H 1.07998 * 119.64406 * 179.75312 * 7 4 3 33 33 H 1.09002 * 109.46513 * 300.00374 * 13 12 10 34 34 H 1.09002 * 109.46764 * 59.99683 * 13 12 10 35 35 H 1.07997 * 119.87425 * 359.97438 * 15 14 13 36 36 H 1.08001 * 120.12391 * 180.27723 * 16 15 14 37 37 H 0.96996 * 119.99721 * 179.97438 * 21 20 18 38 38 H 1.07996 * 120.12894 * 179.97438 * 26 17 16 39 39 H 1.07997 * 119.87910 * 179.97438 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2074 1.1936 0.0000 4 6 3.6058 1.1437 0.0056 5 6 4.3754 2.3513 0.0109 6 7 4.9859 3.3093 0.0152 7 6 4.2415 -0.1027 -0.0003 8 7 3.5404 -1.2131 -0.0056 9 6 2.2123 -1.2021 -0.0052 10 6 1.4709 -2.4844 -0.0109 11 8 0.2620 -2.4873 0.1028 12 8 2.1376 -3.6472 -0.1422 13 6 1.3464 -4.8647 -0.1400 14 6 2.2566 -6.0556 -0.2952 15 6 2.5558 -6.5323 -1.5622 16 6 3.3904 -7.6156 -1.7160 17 6 3.9311 -8.2472 -0.5808 18 6 4.7844 -9.3653 -0.7264 19 1 5.5253 -9.5810 0.0291 20 6 4.6688 -10.1920 -1.8495 21 7 3.5389 -10.2490 -2.5064 22 14 6.1281 -11.2143 -2.4108 23 1 6.0281 -12.5787 -1.8330 24 1 6.1291 -11.3035 -3.8931 25 1 7.3869 -10.5737 -1.9524 26 6 3.6159 -7.7582 0.7005 27 6 2.7836 -6.6700 0.8304 28 1 -0.3633 -0.1338 1.0189 29 1 -0.3633 -0.8155 -0.6254 30 1 -0.3632 0.9493 -0.3937 31 1 1.6875 2.1402 -0.0004 32 1 5.3203 -0.1521 -0.0001 33 1 0.8033 -4.9432 0.8019 34 1 0.6371 -4.8386 -0.9673 35 1 2.1354 -6.0492 -2.4318 36 1 3.6256 -7.9826 -2.7042 37 1 3.4590 -10.8218 -3.2851 38 1 4.0250 -8.2356 1.5786 39 1 2.5400 -6.2932 1.8127 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815337885.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:44:43 Heat of formation + Delta-G solvation = -0.434261 kcal Electronic energy + Delta-G solvation = -24469.876650 eV Core-core repulsion = 20728.531962 eV Total energy + Delta-G solvation = -3741.344688 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.110 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.27213 -39.74678 -37.72138 -37.09141 -36.31428 -34.11388 -33.81982 -32.85706 -30.83621 -29.40140 -28.24249 -27.22669 -25.95314 -23.83053 -23.27081 -21.68891 -21.10678 -20.08563 -19.01543 -18.37438 -17.45927 -17.38421 -16.58242 -16.26756 -15.41286 -15.06325 -14.96130 -14.30250 -14.23165 -14.03311 -13.85355 -13.80771 -13.55287 -13.39947 -13.01977 -12.98309 -12.74467 -12.63124 -12.42904 -12.31873 -12.04166 -11.56678 -11.30684 -11.13685 -10.67661 -10.61696 -10.45815 -10.30905 -10.20540 -9.96697 -9.68329 -9.51408 -9.46595 -9.17329 -7.56008 -7.47633 -6.92582 -4.44705 -0.31008 0.63940 1.97338 2.10492 2.31145 2.73061 2.84609 2.99920 3.03200 3.07354 3.15234 3.26892 3.40787 3.84844 3.86444 4.13099 4.27807 4.35129 4.49304 4.70735 5.02170 5.16230 5.30907 5.42318 5.56471 5.58473 5.62623 5.65433 5.77209 5.97708 6.09190 6.23857 6.30088 6.66500 6.86196 6.89066 6.97814 7.13443 7.22885 7.23614 7.51430 7.71722 7.88025 7.94601 7.98139 8.18568 8.52024 8.77446 8.86094 10.04448 Molecular weight = 322.11amu Principal moments of inertia in cm(-1) A = 0.018589 B = 0.002364 C = 0.002182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1505.869329 B =11843.408126 C =12831.269490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.072 4.072 3 C -0.038 4.038 4 C -0.052 4.052 5 C 0.256 3.744 6 N -0.399 5.399 7 C 0.143 3.857 8 N -0.420 5.420 9 C 0.121 3.879 10 C 0.511 3.489 11 O -0.499 6.499 12 O -0.322 6.322 13 C 0.134 3.866 14 C -0.237 4.237 15 C -0.070 4.070 16 C -0.173 4.173 17 C 0.124 3.876 18 C -0.463 4.463 19 H 0.082 0.918 20 C 0.081 3.919 21 N -0.779 5.779 22 Si 0.903 3.097 23 H -0.270 1.270 24 H -0.274 1.274 25 H -0.258 1.258 26 C -0.230 4.230 27 C -0.060 4.060 28 H 0.085 0.915 29 H 0.102 0.898 30 H 0.067 0.933 31 H 0.155 0.845 32 H 0.177 0.823 33 H 0.064 0.936 34 H 0.065 0.935 35 H 0.089 0.911 36 H 0.109 0.891 37 H 0.283 0.717 38 H 0.095 0.905 39 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.073 17.397 2.361 18.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.074 4.074 3 C -0.066 4.066 4 C -0.058 4.058 5 C -0.060 4.060 6 N -0.074 5.074 7 C -0.021 4.021 8 N -0.129 5.129 9 C -0.016 4.016 10 C 0.354 3.646 11 O -0.388 6.388 12 O -0.237 6.237 13 C 0.062 3.938 14 C -0.238 4.238 15 C -0.089 4.089 16 C -0.192 4.192 17 C 0.122 3.878 18 C -0.491 4.491 19 H 0.100 0.900 20 C -0.139 4.139 21 N -0.403 5.403 22 Si 0.727 3.273 23 H -0.195 1.195 24 H -0.199 1.199 25 H -0.182 1.182 26 C -0.249 4.249 27 C -0.078 4.078 28 H 0.104 0.896 29 H 0.120 0.880 30 H 0.086 0.914 31 H 0.173 0.827 32 H 0.194 0.806 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.107 0.893 36 H 0.127 0.873 37 H 0.094 0.906 38 H 0.113 0.887 39 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -3.223 17.829 2.195 18.250 hybrid contribution -0.064 -0.153 -0.323 0.363 sum -3.286 17.676 1.872 18.076 Atomic orbital electron populations 1.21140 0.87908 1.03977 1.04651 1.20856 0.98935 0.91273 0.96383 1.21563 0.91557 0.98985 0.94487 1.17251 0.92687 0.89317 1.06518 1.25284 0.93755 0.92734 0.94262 1.81306 1.08039 1.10303 1.07741 1.23100 1.01084 0.84939 0.92934 1.67867 1.06540 1.30160 1.08298 1.20449 0.89877 0.91559 0.99705 1.20709 0.85350 0.84780 0.73789 1.90787 1.14367 1.87739 1.45906 1.86906 1.41959 1.14213 1.80596 1.21853 0.92004 0.78841 1.01098 1.18590 1.11455 0.99597 0.94159 1.20491 0.97375 0.96449 0.94592 1.21088 1.02577 0.96955 0.98627 1.17651 0.88671 0.90767 0.90744 1.19620 1.16256 1.08124 1.05088 0.90019 1.25941 0.96098 0.96592 0.95275 1.69855 1.23923 1.31051 1.15489 0.86383 0.82502 0.79872 0.78554 1.19472 1.19897 1.18189 1.20957 1.05718 1.01600 0.96629 1.20396 0.96258 0.95443 0.95708 0.89613 0.87980 0.91435 0.82749 0.80634 0.91748 0.91702 0.89298 0.87344 0.90578 0.88661 0.89240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.92 8.70 36.01 0.31 -0.61 16 2 C -0.07 -0.63 5.92 -104.14 -0.62 -1.25 16 3 C -0.04 -0.25 9.55 -38.89 -0.37 -0.62 16 4 C -0.05 -0.38 5.75 -106.71 -0.61 -1.00 16 5 C 0.26 2.11 15.36 -22.47 -0.35 1.76 16 6 N -0.40 -4.20 18.54 41.84 0.78 -3.43 16 7 C 0.14 1.24 10.92 -17.14 -0.19 1.05 16 8 N -0.42 -5.15 10.10 -9.48 -0.10 -5.25 16 9 C 0.12 1.47 6.75 -82.97 -0.56 0.91 16 10 C 0.51 7.63 7.88 34.79 0.27 7.90 16 11 O -0.50 -7.51 13.09 -19.21 -0.25 -7.76 16 12 O -0.32 -5.71 10.02 -40.43 -0.41 -6.11 16 13 C 0.13 2.41 5.59 36.00 0.20 2.61 16 14 C -0.24 -5.09 5.54 -104.33 -0.58 -5.67 16 15 C -0.07 -1.61 9.67 -39.66 -0.38 -1.99 16 16 C -0.17 -4.37 8.71 -38.87 -0.34 -4.71 16 17 C 0.12 3.23 5.52 -106.82 -0.59 2.64 16 18 C -0.46 -11.90 9.00 -37.74 -0.34 -12.24 16 19 H 0.08 2.02 7.95 -52.48 -0.42 1.60 16 20 C 0.08 1.97 4.96 -17.34 -0.09 1.89 16 21 N -0.78 -19.52 11.55 55.55 0.64 -18.88 16 22 Si 0.90 17.96 29.62 -169.99 -5.04 12.93 16 23 H -0.27 -5.27 7.11 56.52 0.40 -4.87 16 24 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 25 H -0.26 -5.13 7.11 56.52 0.40 -4.73 16 26 C -0.23 -5.50 9.80 -38.87 -0.38 -5.89 16 27 C -0.06 -1.31 9.67 -39.66 -0.38 -1.69 16 28 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.10 1.00 5.89 -51.93 -0.31 0.69 16 30 H 0.07 0.34 8.05 -51.93 -0.42 -0.08 16 31 H 0.15 0.55 8.06 -52.49 -0.42 0.13 16 32 H 0.18 1.09 8.06 -52.49 -0.42 0.67 16 33 H 0.06 1.09 8.07 -51.93 -0.42 0.67 16 34 H 0.06 1.10 8.07 -51.93 -0.42 0.68 16 35 H 0.09 1.83 8.06 -52.49 -0.42 1.40 16 36 H 0.11 2.80 6.60 -52.49 -0.35 2.45 16 37 H 0.28 6.41 8.30 -40.82 -0.34 6.07 16 38 H 0.10 2.14 8.06 -52.49 -0.42 1.72 16 39 H 0.09 1.73 8.06 -52.49 -0.42 1.31 16 LS Contribution 354.88 15.07 5.35 5.35 Total: -1.00 -29.04 354.88 -8.00 -37.04 By element: Atomic # 1 Polarization: 7.00 SS G_CDS: -4.00 Total: 3.00 kcal Atomic # 6 Polarization: -11.91 SS G_CDS: -4.99 Total: -16.90 kcal Atomic # 7 Polarization: -28.87 SS G_CDS: 1.32 Total: -27.55 kcal Atomic # 8 Polarization: -13.22 SS G_CDS: -0.66 Total: -13.88 kcal Atomic # 14 Polarization: 17.96 SS G_CDS: -5.04 Total: 12.93 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -29.04 -8.00 -37.04 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815337885.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.609 kcal (2) G-P(sol) polarization free energy of solvation -29.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.043 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds