Wall clock time and date at job start Tue Mar 31 2020 13:48:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.53000 * 109.46877 * 2 1 4 4 C 1.53000 * 109.47001 * 179.97438 * 3 2 1 5 5 H 1.09004 * 109.47212 * 305.00115 * 4 3 2 6 6 C 1.47199 * 109.47280 * 184.99926 * 4 3 2 7 7 N 4.86395 * 126.73605 * 3.15262 * 2 1 3 8 8 N 1.46503 * 109.47022 * 65.00051 * 4 3 2 9 9 S 1.65601 * 119.99955 * 215.00053 * 8 4 3 10 10 O 1.42098 * 106.40167 * 311.46028 * 9 8 4 11 11 O 1.42103 * 106.40054 * 178.53999 * 9 8 4 12 12 C 1.76202 * 107.21727 * 65.00183 * 9 8 4 13 13 C 1.38234 * 120.00123 * 90.00219 * 12 9 8 14 14 C 1.38230 * 119.99885 * 180.02562 * 13 12 9 15 15 C 1.38235 * 120.00326 * 359.97438 * 14 13 12 16 16 C 1.50702 * 120.00236 * 179.70551 * 15 14 13 17 17 C 1.50690 * 109.47286 * 89.99933 * 16 15 14 18 18 H 1.07999 * 120.00161 * 0.02562 * 17 16 15 19 19 C 1.37877 * 120.00164 * 179.97438 * 17 16 15 20 20 N 1.31515 * 119.99696 * 0.02562 * 19 17 16 21 21 Si 1.86796 * 120.00395 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.46989 * 0.02562 * 21 19 17 23 23 H 1.48504 * 109.47120 * 119.99918 * 21 19 17 24 24 H 1.48497 * 109.47257 * 240.00250 * 21 19 17 25 25 C 1.38234 * 119.99814 * 359.97438 * 15 14 13 26 26 C 1.38235 * 119.99672 * 270.02049 * 12 9 8 27 27 H 1.08999 * 109.46914 * 300.00021 * 1 2 3 28 28 H 1.09003 * 109.46924 * 59.99808 * 1 2 3 29 29 H 1.08992 * 109.47059 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.46914 * 239.99979 * 2 1 3 31 31 H 1.08999 * 109.47178 * 119.99758 * 2 1 3 32 32 H 1.08999 * 109.47366 * 60.00256 * 3 2 1 33 33 H 1.09003 * 109.47500 * 299.99839 * 3 2 1 34 34 H 0.96998 * 119.99825 * 35.00023 * 8 4 3 35 35 H 1.07992 * 119.99701 * 359.97438 * 13 12 9 36 36 H 1.08000 * 120.00356 * 179.97438 * 14 13 12 37 37 H 1.09003 * 109.46871 * 209.99878 * 16 15 14 38 38 H 1.09001 * 109.47017 * 329.99216 * 16 15 14 39 39 H 0.97005 * 120.00116 * 179.97438 * 20 19 17 40 40 H 1.08001 * 120.00299 * 179.97438 * 25 15 14 41 41 H 1.07997 * 120.00423 * 359.97438 * 26 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 0.0006 5 1 3.9331 0.8532 0.8427 6 6 4.0607 2.8251 0.1216 7 7 4.4394 3.8921 0.2144 8 7 4.0589 0.8586 -1.2509 9 16 5.4425 -0.0513 -1.2552 10 8 6.4178 0.6982 -0.5438 11 8 5.6267 -0.4952 -2.5925 12 6 5.1223 -1.4919 -0.2924 13 6 4.6178 -2.6285 -0.8959 14 6 4.3661 -3.7585 -0.1405 15 6 4.6194 -3.7520 1.2184 16 6 4.3388 -4.9817 2.0432 17 6 5.5654 -5.8564 2.0743 18 1 6.4591 -5.5521 1.5496 19 6 5.5473 -7.0447 2.7733 20 7 4.4592 -7.4149 3.4126 21 14 7.0676 -8.1294 2.8113 22 1 8.1499 -7.4926 2.0186 23 1 7.5185 -8.3006 4.2158 24 1 6.7432 -9.4568 2.2301 25 6 5.1249 -2.6156 1.8218 26 6 5.3753 -1.4851 1.0666 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 1.6767 1.9564 0.8900 33 1 1.6767 1.9564 -0.8900 34 1 3.5721 1.0050 -2.0770 35 1 4.4196 -2.6335 -1.9575 36 1 3.9716 -4.6465 -0.6119 37 1 4.0777 -4.6858 3.0593 38 1 3.5096 -5.5341 1.6012 39 1 4.4463 -8.2511 3.9041 40 1 5.3224 -2.6103 2.8836 41 1 5.7695 -0.5971 1.5382 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000886397519.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:48:41 Heat of formation + Delta-G solvation = -43.539236 kcal Electronic energy + Delta-G solvation = -24664.402316 eV Core-core repulsion = 21056.632407 eV Total energy + Delta-G solvation = -3607.769909 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 322.114 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -38.93326 -38.44535 -37.24106 -35.91894 -35.86788 -33.74350 -33.65655 -31.63429 -30.67697 -29.32322 -27.50914 -24.95739 -23.80016 -22.45415 -21.55885 -21.00614 -19.82009 -18.75125 -18.08306 -17.21152 -16.64872 -16.49052 -15.53571 -15.16338 -15.14533 -14.57582 -14.45594 -14.40032 -13.94848 -13.66437 -13.29562 -13.20801 -13.17897 -12.91644 -12.76102 -12.32276 -12.20325 -12.14050 -12.08496 -12.01493 -11.78337 -11.54646 -11.42769 -11.37099 -11.03391 -10.98245 -10.95916 -10.64327 -10.55680 -10.27309 -9.78631 -9.67764 -8.68286 -8.58455 -8.47387 -6.21493 -4.26569 0.26517 1.20956 1.70102 2.27080 2.46852 3.04780 3.20591 3.29060 3.33910 3.44397 3.63845 4.02047 4.27162 4.29285 4.33884 4.43130 4.67586 4.81464 5.04400 5.09940 5.14404 5.16569 5.19248 5.42407 5.46001 5.52748 5.64253 5.71700 5.82811 5.87326 5.92162 6.06049 6.15255 6.23313 6.40183 6.51778 6.75460 6.83633 7.22507 7.23208 7.35376 7.52529 7.73779 8.08232 8.78587 9.38935 10.88470 Molecular weight = 322.11amu Principal moments of inertia in cm(-1) A = 0.016428 B = 0.003393 C = 0.003109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1703.957884 B = 8250.528124 C = 9002.852325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.128 4.128 3 C -0.119 4.119 4 C 0.255 3.745 5 H 0.129 0.871 6 C 0.191 3.809 7 N -0.410 5.410 8 N -1.108 6.108 9 S 2.690 3.310 10 O -0.957 6.957 11 O -0.957 6.957 12 C -0.703 4.703 13 C -0.018 4.018 14 C -0.143 4.143 15 C 0.030 3.970 16 C 0.038 3.962 17 C -0.518 4.518 18 H 0.060 0.940 19 C 0.061 3.939 20 N -0.891 5.891 21 Si 0.898 3.102 22 H -0.271 1.271 23 H -0.282 1.282 24 H -0.282 1.282 25 C -0.143 4.143 26 C -0.028 4.028 27 H 0.054 0.946 28 H 0.053 0.947 29 H 0.059 0.941 30 H 0.072 0.928 31 H 0.074 0.926 32 H 0.088 0.912 33 H 0.081 0.919 34 H 0.424 0.576 35 H 0.131 0.869 36 H 0.129 0.871 37 H 0.035 0.965 38 H 0.035 0.965 39 H 0.264 0.736 40 H 0.130 0.870 41 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.357 14.791 -7.290 18.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.166 4.166 3 C -0.159 4.159 4 C 0.144 3.856 5 H 0.147 0.853 6 C -0.130 4.130 7 N -0.086 5.086 8 N -0.866 5.866 9 S 2.783 3.217 10 O -0.947 6.947 11 O -0.947 6.947 12 C -0.793 4.793 13 C -0.038 4.038 14 C -0.162 4.162 15 C 0.030 3.970 16 C 0.002 3.998 17 C -0.556 4.556 18 H 0.078 0.922 19 C -0.141 4.141 20 N -0.529 5.529 21 Si 0.725 3.275 22 H -0.196 1.196 23 H -0.208 1.208 24 H -0.208 1.208 25 C -0.162 4.162 26 C -0.048 4.048 27 H 0.073 0.927 28 H 0.072 0.928 29 H 0.078 0.922 30 H 0.091 0.909 31 H 0.092 0.908 32 H 0.106 0.894 33 H 0.099 0.901 34 H 0.259 0.741 35 H 0.149 0.851 36 H 0.147 0.853 37 H 0.053 0.947 38 H 0.053 0.947 39 H 0.073 0.927 40 H 0.147 0.853 41 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -6.969 16.457 -7.320 19.312 hybrid contribution 0.159 -1.587 0.155 1.602 sum -6.809 14.870 -7.165 17.856 Atomic orbital electron populations 1.21749 0.95254 1.02239 1.01703 1.21572 0.96353 0.94898 1.03790 1.21933 0.90036 0.99496 1.04442 1.18144 0.96286 0.83033 0.88151 0.85329 1.29664 0.93815 0.95331 0.94166 1.81175 1.07813 1.12808 1.06818 1.55834 1.48160 1.67194 1.15451 1.01917 0.72416 0.73600 0.73767 1.93601 1.56028 1.70299 1.74753 1.93591 1.83966 1.82012 1.35122 1.30174 1.22484 1.18553 1.08106 1.20757 0.92250 0.91610 0.99151 1.21255 1.02730 0.98080 0.94169 1.21139 0.86091 0.95499 0.94287 1.18554 0.98069 0.88631 0.94582 1.20999 0.97853 1.04263 1.32496 0.92221 1.24998 0.96426 0.97666 0.95018 1.69951 1.27289 1.23037 1.32617 0.86434 0.82798 0.80284 0.77967 1.19563 1.20794 1.20791 1.21250 1.01476 0.92789 1.00657 1.20799 0.93641 0.98857 0.91460 0.92661 0.92788 0.92198 0.90882 0.90755 0.89389 0.90070 0.74091 0.85148 0.85281 0.94663 0.94659 0.92657 0.85257 0.85229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.88 9.91 37.16 0.37 -0.51 16 2 C -0.13 -0.76 5.82 -26.73 -0.16 -0.92 16 3 C -0.12 -0.60 4.77 -26.73 -0.13 -0.73 16 4 C 0.26 1.86 2.61 -70.72 -0.18 1.68 16 5 H 0.13 0.81 7.23 -51.93 -0.38 0.44 16 6 C 0.19 1.98 14.98 -20.76 -0.31 1.67 16 7 N -0.41 -5.42 18.54 42.15 0.78 -4.64 16 8 N -1.11 -8.70 4.88 -7.30 -0.04 -8.73 16 9 S 2.69 32.60 5.65 -107.50 -0.61 31.99 16 10 O -0.96 -14.43 17.04 -57.17 -0.97 -15.41 16 11 O -0.96 -13.86 17.28 -57.17 -0.99 -14.85 16 12 C -0.70 -9.38 5.82 -39.58 -0.23 -9.61 16 13 C -0.02 -0.25 9.52 -39.59 -0.38 -0.63 16 14 C -0.14 -2.37 9.70 -39.59 -0.38 -2.75 16 15 C 0.03 0.57 5.07 -104.62 -0.53 0.04 16 16 C 0.04 0.88 5.10 -29.04 -0.15 0.73 16 17 C -0.52 -13.49 9.09 -34.45 -0.31 -13.80 16 18 H 0.06 1.56 7.74 -52.49 -0.41 1.16 16 19 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 20 N -0.89 -24.75 13.29 55.43 0.74 -24.01 16 21 Si 0.90 20.58 29.54 -169.99 -5.02 15.56 16 22 H -0.27 -6.18 7.11 56.52 0.40 -5.77 16 23 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 24 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 25 C -0.14 -2.35 9.70 -39.58 -0.38 -2.73 16 26 C -0.03 -0.39 8.90 -39.58 -0.35 -0.74 16 27 H 0.05 0.30 8.14 -51.93 -0.42 -0.13 16 28 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 29 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 30 H 0.07 0.43 7.75 -51.93 -0.40 0.03 16 31 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 34 H 0.42 2.20 8.84 -34.47 -0.30 1.89 16 35 H 0.13 1.54 7.62 -52.49 -0.40 1.14 16 36 H 0.13 2.05 8.06 -52.49 -0.42 1.62 16 37 H 0.04 0.85 8.08 -51.93 -0.42 0.43 16 38 H 0.04 0.85 8.09 -51.93 -0.42 0.43 16 39 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 40 H 0.13 2.04 8.06 -52.49 -0.42 1.61 16 41 H 0.13 1.51 7.62 -52.49 -0.40 1.11 16 LS Contribution 370.24 15.07 5.58 5.58 Total: -1.00 -33.62 370.24 -9.40 -43.02 By element: Atomic # 1 Polarization: 3.91 SS G_CDS: -5.65 Total: -1.74 kcal Atomic # 6 Polarization: -23.54 SS G_CDS: -3.23 Total: -26.77 kcal Atomic # 7 Polarization: -38.87 SS G_CDS: 1.48 Total: -37.38 kcal Atomic # 8 Polarization: -28.30 SS G_CDS: -1.96 Total: -30.26 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.56 kcal Atomic # 16 Polarization: 32.60 SS G_CDS: -0.61 Total: 31.99 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -33.62 -9.40 -43.02 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886397519.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.519 kcal (2) G-P(sol) polarization free energy of solvation -33.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.020 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds