Wall clock time and date at job start Tue Mar 31 2020 14:00:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.46730 * 2 1 4 4 H 1.08999 * 109.47532 * 305.00505 * 3 2 1 5 5 C 1.47206 * 109.47137 * 185.00447 * 3 2 1 6 6 N 3.43554 * 154.82245 * 351.56403 * 2 1 3 7 7 N 1.46500 * 109.47057 * 65.00783 * 3 2 1 8 8 C 1.46498 * 120.00367 * 59.99761 * 7 3 2 9 9 S 1.65600 * 119.99824 * 239.99557 * 7 3 2 10 10 O 1.42101 * 106.40342 * 156.45602 * 9 7 3 11 11 O 1.42109 * 106.40289 * 23.54183 * 9 7 3 12 12 C 1.76200 * 107.22074 * 270.00082 * 9 7 3 13 13 C 1.38234 * 120.00103 * 90.00155 * 12 9 7 14 14 C 1.38238 * 119.99675 * 180.26081 * 13 12 9 15 15 C 1.38228 * 120.00114 * 359.50218 * 14 13 12 16 16 C 1.50698 * 120.00195 * 180.26174 * 15 14 13 17 17 C 1.50695 * 109.47279 * 270.21448 * 16 15 14 18 18 H 1.08003 * 120.00181 * 359.97438 * 17 16 15 19 19 C 1.37878 * 120.00379 * 179.97438 * 17 16 15 20 20 N 1.31516 * 119.99755 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00333 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.46788 * 90.00194 * 21 19 17 23 23 H 1.48500 * 109.47016 * 210.00192 * 21 19 17 24 24 H 1.48504 * 109.47091 * 330.00125 * 21 19 17 25 25 C 1.38234 * 120.00051 * 0.47390 * 15 14 13 26 26 C 1.38235 * 119.99676 * 269.97517 * 12 9 7 27 27 H 1.08992 * 109.47512 * 59.99801 * 1 2 3 28 28 H 1.09007 * 109.46663 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.46582 * 299.99125 * 1 2 3 30 30 H 1.09003 * 109.47246 * 240.00546 * 2 1 3 31 31 H 1.08998 * 109.47848 * 120.00495 * 2 1 3 32 32 H 1.09000 * 109.46854 * 270.00142 * 8 7 3 33 33 H 1.08996 * 109.47249 * 29.99762 * 8 7 3 34 34 H 1.08998 * 109.47427 * 149.99975 * 8 7 3 35 35 H 1.08002 * 119.99744 * 359.97438 * 13 12 9 36 36 H 1.08004 * 119.99577 * 179.72816 * 14 13 12 37 37 H 1.09010 * 109.46956 * 30.21065 * 16 15 14 38 38 H 1.09000 * 109.47485 * 150.21108 * 16 15 14 39 39 H 0.97000 * 120.00269 * 180.02562 * 20 19 17 40 40 H 1.08001 * 120.00294 * 179.78842 * 25 15 14 41 41 H 1.07996 * 120.00471 * 0.02562 * 26 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6052 1.9816 -0.8417 5 6 3.5070 1.4444 -0.1211 6 7 4.6391 1.4457 -0.2144 7 7 1.6524 2.0974 1.2519 8 6 2.1140 1.5589 2.5337 9 16 0.6927 3.4465 1.2180 10 8 0.0532 3.5159 2.4851 11 8 -0.0198 3.4014 -0.0107 12 6 1.7611 4.8444 1.1226 13 6 2.1452 5.3379 -0.1102 14 6 2.9877 6.4314 -0.1850 15 6 3.4378 7.0375 0.9729 16 6 4.3515 8.2331 0.8914 17 6 5.7851 7.7693 0.8713 18 1 6.0121 6.7142 0.9138 19 6 6.8073 8.6918 0.7987 20 7 6.5310 9.9766 0.7464 21 14 8.5844 8.1169 0.7745 22 1 9.0151 7.8991 -0.6299 23 1 9.4473 9.1495 1.4024 24 1 8.7036 6.8450 1.5317 25 6 3.0533 6.5443 2.2057 26 6 2.2147 5.4479 2.2806 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0278 0.0005 29 1 -0.3633 0.5137 0.8901 30 1 1.8934 -0.5138 -0.8900 31 1 1.8935 -0.5139 0.8899 32 1 1.3915 0.8312 2.9034 33 1 3.0806 1.0740 2.3972 34 1 2.2133 2.3706 3.2543 35 1 1.7907 4.8664 -1.0149 36 1 3.2913 6.8142 -1.1481 37 1 4.1378 8.7923 -0.0196 38 1 4.1892 8.8743 1.7578 39 1 7.2501 10.6256 0.6950 40 1 3.4077 7.0158 3.1104 41 1 1.9146 5.0624 3.2437 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000886414590.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:00:57 Heat of formation + Delta-G solvation = -48.758271 kcal Electronic energy + Delta-G solvation = -24975.063332 eV Core-core repulsion = 21367.067109 eV Total energy + Delta-G solvation = -3607.996223 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 322.114 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.26061 -39.41658 -38.40429 -37.02174 -36.74765 -35.63943 -33.55359 -33.32925 -31.99624 -29.29983 -29.14096 -26.66887 -25.62526 -23.77378 -22.71309 -22.46376 -20.49347 -19.23311 -19.00127 -18.66101 -18.55463 -17.10982 -16.89264 -16.35938 -16.03800 -15.78144 -15.64570 -15.19633 -14.89605 -14.67358 -14.49972 -14.46282 -14.12742 -13.93733 -13.89137 -13.69752 -13.49179 -13.44906 -13.30399 -13.20964 -12.96226 -12.71985 -12.68158 -12.66792 -12.52758 -12.17863 -12.07835 -11.99311 -11.72091 -11.70496 -11.50370 -10.69781 -10.40785 -9.99777 -9.96937 -8.31222 -6.44225 -0.78228 -0.09211 0.36388 1.33957 1.34104 1.37580 1.45713 1.67507 2.08165 2.30448 2.49476 2.69384 2.80326 3.01192 3.19370 3.66255 3.81495 3.91444 3.93713 4.04261 4.12371 4.41258 4.43613 4.49808 4.60252 4.68686 4.78127 4.82390 4.86622 4.94056 4.98942 5.04636 5.17975 5.21376 5.22038 5.25710 5.29882 5.40614 5.57104 5.62583 5.82498 5.89108 6.05401 6.43478 6.67311 7.24866 8.79027 Molecular weight = 322.11amu Principal moments of inertia in cm(-1) A = 0.017199 B = 0.003671 C = 0.003292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1627.623047 B = 7625.372378 C = 8503.849901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.117 4.117 3 C 0.242 3.758 4 H 0.155 0.845 5 C 0.218 3.782 6 N -0.463 5.463 7 N -0.985 5.985 8 C 0.077 3.923 9 S 2.720 3.280 10 O -0.964 6.964 11 O -0.958 6.958 12 C -0.709 4.709 13 C -0.021 4.021 14 C -0.158 4.158 15 C -0.005 4.005 16 C 0.048 3.952 17 C -0.532 4.532 18 H 0.052 0.948 19 C 0.010 3.990 20 N -0.925 5.925 21 Si 0.963 3.037 22 H -0.272 1.272 23 H -0.275 1.275 24 H -0.269 1.269 25 C -0.157 4.157 26 C -0.020 4.020 27 H 0.066 0.934 28 H 0.080 0.920 29 H 0.047 0.953 30 H 0.103 0.897 31 H 0.091 0.909 32 H 0.095 0.905 33 H 0.077 0.923 34 H 0.078 0.922 35 H 0.161 0.839 36 H 0.128 0.872 37 H 0.012 0.988 38 H 0.013 0.987 39 H 0.268 0.732 40 H 0.129 0.871 41 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.023 -21.925 0.468 26.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.158 4.158 3 C 0.133 3.867 4 H 0.173 0.827 5 C -0.103 4.103 6 N -0.140 5.140 7 N -0.823 5.823 8 C -0.067 4.067 9 S 2.810 3.190 10 O -0.954 6.954 11 O -0.948 6.948 12 C -0.795 4.795 13 C -0.040 4.040 14 C -0.177 4.177 15 C -0.006 4.006 16 C 0.011 3.989 17 C -0.570 4.570 18 H 0.070 0.930 19 C -0.189 4.189 20 N -0.564 5.564 21 Si 0.787 3.213 22 H -0.197 1.197 23 H -0.200 1.200 24 H -0.194 1.194 25 C -0.176 4.176 26 C -0.039 4.039 27 H 0.085 0.915 28 H 0.099 0.901 29 H 0.067 0.933 30 H 0.121 0.879 31 H 0.109 0.891 32 H 0.113 0.887 33 H 0.096 0.904 34 H 0.097 0.903 35 H 0.179 0.821 36 H 0.145 0.855 37 H 0.030 0.970 38 H 0.031 0.969 39 H 0.077 0.923 40 H 0.147 0.853 41 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -13.148 -21.721 0.385 25.393 hybrid contribution 1.690 1.174 0.010 2.058 sum -11.458 -20.548 0.396 23.529 Atomic orbital electron populations 1.21842 0.93704 1.03491 1.02570 1.21866 0.97540 0.90737 1.05612 1.18910 0.79946 0.99717 0.88172 0.82746 1.29978 0.95612 0.92150 0.92519 1.81310 1.14584 1.09482 1.08632 1.57578 1.69538 1.42993 1.12241 1.21849 1.01714 1.01232 0.81942 1.01321 0.72913 0.71737 0.73028 1.93560 1.72269 1.86470 1.43093 1.93554 1.69140 1.86412 1.45698 1.31028 1.24413 1.24598 0.99463 1.21083 0.92231 0.93778 0.96902 1.21322 0.99792 0.98063 0.98543 1.20831 0.90613 0.95018 0.94091 1.18266 0.92886 0.91001 0.96775 1.21243 0.91083 0.92994 1.51707 0.93016 1.25855 1.03796 0.94872 0.94343 1.70053 1.34253 1.01606 1.50471 0.85477 0.78905 0.78205 0.78679 1.19701 1.20040 1.19407 1.21323 1.00044 0.98590 0.97664 1.21063 0.91892 0.93024 0.97901 0.91538 0.90072 0.93339 0.87903 0.89058 0.88667 0.90397 0.90284 0.82122 0.85453 0.96973 0.96897 0.92301 0.85335 0.82355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.30 9.80 71.98 0.71 -0.60 16 2 C -0.12 -0.90 5.32 30.59 0.16 -0.74 16 3 C 0.24 3.27 2.48 43.19 0.11 3.38 16 4 H 0.16 1.74 6.91 -2.39 -0.02 1.72 16 5 C 0.22 4.40 13.90 89.44 1.24 5.64 16 6 N -0.46 -12.92 18.54 20.01 0.37 -12.55 16 7 N -0.99 -15.57 2.50 -526.08 -1.32 -16.89 16 8 C 0.08 0.94 9.25 127.77 1.18 2.12 16 9 S 2.72 59.69 5.64 -56.49 -0.32 59.37 16 10 O -0.96 -24.54 16.36 -128.00 -2.09 -26.64 16 11 O -0.96 -22.41 15.85 -128.00 -2.03 -24.44 16 12 C -0.71 -20.15 5.97 22.27 0.13 -20.01 16 13 C -0.02 -0.64 9.52 22.27 0.21 -0.43 16 14 C -0.16 -6.00 9.70 22.27 0.22 -5.78 16 15 C -0.01 -0.22 5.07 -19.87 -0.10 -0.33 16 16 C 0.05 2.50 5.10 29.10 0.15 2.65 16 17 C -0.53 -30.13 9.09 25.60 0.23 -29.90 16 18 H 0.05 2.92 7.74 -2.91 -0.02 2.90 16 19 C 0.01 0.59 5.46 84.65 0.46 1.05 16 20 N -0.92 -54.89 13.29 21.45 0.28 -54.60 16 21 Si 0.96 44.32 29.54 68.60 2.03 46.34 16 22 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 23 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 24 H -0.27 -12.15 7.11 99.48 0.71 -11.45 16 25 C -0.16 -5.94 9.70 22.27 0.22 -5.72 16 26 C -0.02 -0.61 9.52 22.27 0.21 -0.39 16 27 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 28 H 0.08 0.43 8.14 -2.38 -0.02 0.41 16 29 H 0.05 0.48 7.75 -2.38 -0.02 0.46 16 30 H 0.10 0.51 8.14 -2.39 -0.02 0.49 16 31 H 0.09 0.53 7.51 -2.39 -0.02 0.51 16 32 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 33 H 0.08 0.90 7.27 -2.39 -0.02 0.88 16 34 H 0.08 1.02 7.79 -2.39 -0.02 1.00 16 35 H 0.16 3.78 7.62 -2.91 -0.02 3.75 16 36 H 0.13 4.70 8.06 -2.91 -0.02 4.68 16 37 H 0.01 0.67 8.09 -2.38 -0.02 0.65 16 38 H 0.01 0.71 8.09 -2.39 -0.02 0.69 16 39 H 0.27 14.90 8.31 -92.71 -0.77 14.13 16 40 H 0.13 4.70 8.06 -2.91 -0.02 4.67 16 41 H 0.16 3.85 7.62 -2.91 -0.02 3.83 16 Total: -1.00 -73.89 366.29 3.09 -70.80 By element: Atomic # 1 Polarization: 6.63 SS G_CDS: 1.03 Total: 7.66 kcal Atomic # 6 Polarization: -54.19 SS G_CDS: 5.13 Total: -49.06 kcal Atomic # 7 Polarization: -83.38 SS G_CDS: -0.66 Total: -84.04 kcal Atomic # 8 Polarization: -46.95 SS G_CDS: -4.12 Total: -51.07 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 2.03 Total: 46.34 kcal Atomic # 16 Polarization: 59.69 SS G_CDS: -0.32 Total: 59.37 kcal Total: -73.89 3.09 -70.80 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886414590.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.044 kcal (2) G-P(sol) polarization free energy of solvation -73.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.803 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds