Wall clock time and date at job start Tue Mar 31 2020 14:03:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.52995 * 109.46897 * 2 1 4 4 N 1.46896 * 109.46657 * 120.00048 * 2 1 3 5 5 C 1.46904 * 110.99826 * 152.61228 * 4 2 1 6 6 C 1.50696 * 109.46884 * 293.95188 * 5 4 2 7 7 H 1.07996 * 120.00504 * 359.97438 * 6 5 4 8 8 C 1.37881 * 120.00299 * 179.97438 * 6 5 4 9 9 N 1.31517 * 119.99407 * 359.97438 * 8 6 5 10 10 Si 1.86795 * 120.00546 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.46996 * 59.99624 * 10 8 6 12 12 H 1.48504 * 109.47409 * 180.02562 * 10 8 6 13 13 H 1.48505 * 109.46847 * 300.00077 * 10 8 6 14 14 C 1.46898 * 111.00258 * 276.55992 * 4 2 1 15 15 C 1.50705 * 109.46946 * 75.76866 * 14 4 2 16 16 C 1.33640 * 126.03968 * 80.93644 * 15 14 4 17 17 N 1.31770 * 114.50285 * 180.02562 * 16 15 14 18 18 C 1.29034 * 117.12652 * 0.02562 * 17 16 15 19 19 C 1.50697 * 124.91731 * 179.97438 * 18 17 16 20 20 C 1.53006 * 109.47028 * 90.02497 * 19 18 17 21 21 F 1.39900 * 109.46949 * 59.99867 * 20 19 18 22 22 F 1.39894 * 109.47243 * 179.97438 * 20 19 18 23 23 F 1.39907 * 109.47148 * 300.00177 * 20 19 18 24 24 S 1.70977 * 110.16553 * 359.72343 * 18 17 16 25 25 H 1.08994 * 109.46926 * 306.20889 * 1 2 3 26 26 H 1.08994 * 109.46824 * 66.20703 * 1 2 3 27 27 H 1.09000 * 109.47154 * 186.20862 * 1 2 3 28 28 H 1.09000 * 109.46595 * 239.99900 * 2 1 3 29 29 H 1.09005 * 109.46868 * 179.97438 * 3 2 1 30 30 H 1.08997 * 109.47518 * 299.99486 * 3 2 1 31 31 H 1.09000 * 109.47580 * 60.00504 * 3 2 1 32 32 H 1.09000 * 109.47214 * 53.95159 * 5 4 2 33 33 H 1.09005 * 109.47196 * 173.95089 * 5 4 2 34 34 H 0.97004 * 119.99791 * 179.97438 * 9 8 6 35 35 H 1.08994 * 109.47637 * 195.77001 * 14 4 2 36 36 H 1.09004 * 109.47116 * 315.77406 * 14 4 2 37 37 H 1.08005 * 122.74353 * 0.02562 * 16 15 14 38 38 H 1.08999 * 109.47101 * 210.02329 * 19 18 17 39 39 H 1.08999 * 109.47488 * 330.03113 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0196 -0.6925 1.1994 5 6 3.3432 -1.2841 0.9624 6 6 3.2262 -2.3823 -0.0630 7 1 2.2648 -2.6175 -0.4950 8 6 4.3465 -3.0868 -0.4497 9 7 5.5175 -2.8000 0.0760 10 14 4.2014 -4.4485 -1.7201 11 1 3.6749 -3.8867 -2.9899 12 1 5.5394 -5.0465 -1.9599 13 1 3.2743 -5.4952 -1.2199 14 6 2.0474 0.2131 2.3558 15 6 0.6447 0.4175 2.8674 16 6 -0.0306 -0.4155 3.6650 17 7 -1.2463 -0.0114 3.9735 18 6 -1.6345 1.1159 3.4802 19 6 -2.9846 1.7419 3.7170 20 6 -2.9204 2.6401 4.9540 21 9 -1.9692 3.6457 4.7512 22 9 -4.1736 3.2217 5.1736 23 9 -2.5594 1.8745 6.0680 24 16 -0.3927 1.7999 2.5245 25 1 -0.3633 0.6070 0.8292 26 1 -0.3633 0.4146 -0.9403 27 1 -0.3633 -1.0216 0.1111 28 1 1.8933 -0.5139 -0.8900 29 1 3.1301 1.4425 0.0005 30 1 1.6768 1.9563 -0.8900 31 1 1.6768 1.9563 0.8900 32 1 4.0242 -0.5160 0.5959 33 1 3.7290 -1.6970 1.8945 34 1 6.3057 -3.2958 -0.1957 35 1 2.6617 -0.2225 3.1438 36 1 2.4681 1.1728 2.0556 37 1 0.3861 -1.3438 4.0270 38 1 -3.2658 2.3384 2.8491 39 1 -3.7258 0.9584 3.8751 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000891696683.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:03:46 Heat of formation + Delta-G solvation = -98.825969 kcal Electronic energy + Delta-G solvation = -25396.930586 eV Core-core repulsion = 21244.906523 eV Total energy + Delta-G solvation = -4152.024062 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 322.102 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -50.33301 -47.86985 -47.76710 -39.79570 -37.93576 -33.59397 -32.87728 -31.35263 -30.02875 -27.18841 -26.64794 -25.50663 -23.89283 -22.95038 -22.14731 -19.84055 -19.23190 -18.81124 -18.53797 -18.01081 -17.46847 -16.30703 -15.63456 -15.10900 -14.77613 -14.74944 -14.64412 -14.46251 -14.23991 -14.05564 -13.97525 -13.90139 -13.85773 -13.54596 -13.12345 -13.03737 -12.48042 -12.36431 -12.24235 -12.05050 -11.69238 -11.65969 -11.03242 -10.93762 -10.82786 -10.69213 -10.56325 -10.24151 -9.89512 -9.65906 -9.34474 -8.77902 -8.62034 -8.49028 -7.36937 -6.08824 -4.10217 0.60828 1.26070 1.72080 2.44347 2.93071 3.29923 3.34446 3.37362 3.46821 3.57526 3.76184 4.18629 4.37617 4.67407 4.83599 4.94309 5.12651 5.18800 5.26986 5.38443 5.45784 5.66046 5.82023 5.92558 6.01920 6.03909 6.19593 6.22201 6.28601 6.39899 6.75576 6.76027 7.18501 7.27275 7.70568 7.73745 7.98665 8.10256 8.43831 8.97002 9.54138 11.01769 Molecular weight = 322.10amu Principal moments of inertia in cm(-1) A = 0.030406 B = 0.002965 C = 0.002920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 920.650994 B = 9442.811895 C = 9585.877692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.077 3.923 3 C -0.180 4.180 4 N -0.522 5.522 5 C 0.194 3.806 6 C -0.508 4.508 7 H 0.063 0.937 8 C 0.057 3.943 9 N -0.898 5.898 10 Si 0.898 3.102 11 H -0.277 1.277 12 H -0.288 1.288 13 H -0.276 1.276 14 C 0.109 3.891 15 C -0.164 4.164 16 C 0.039 3.961 17 N -0.442 5.442 18 C -0.014 4.014 19 C -0.081 4.081 20 C 0.457 3.543 21 F -0.180 7.180 22 F -0.182 7.182 23 F -0.173 7.173 24 S 0.151 5.849 25 H 0.054 0.946 26 H 0.045 0.955 27 H 0.058 0.942 28 H 0.096 0.904 29 H 0.058 0.942 30 H 0.055 0.945 31 H 0.048 0.952 32 H -0.006 1.006 33 H 0.031 0.969 34 H 0.262 0.738 35 H 0.092 0.908 36 H 0.056 0.944 37 H 0.181 0.819 38 H 0.127 0.873 39 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.385 12.757 6.389 20.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.032 4.032 3 C -0.238 4.238 4 N -0.246 5.246 5 C 0.069 3.931 6 C -0.547 4.547 7 H 0.081 0.919 8 C -0.144 4.144 9 N -0.537 5.537 10 Si 0.725 3.275 11 H -0.203 1.203 12 H -0.214 1.214 13 H -0.201 1.201 14 C -0.022 4.022 15 C -0.286 4.286 16 C -0.112 4.112 17 N -0.156 5.156 18 C -0.290 4.290 19 C -0.122 4.122 20 C 0.402 3.598 21 F -0.162 7.162 22 F -0.163 7.163 23 F -0.154 7.154 24 S 0.406 5.594 25 H 0.072 0.928 26 H 0.064 0.936 27 H 0.077 0.923 28 H 0.114 0.886 29 H 0.077 0.923 30 H 0.074 0.926 31 H 0.067 0.933 32 H 0.012 0.988 33 H 0.049 0.951 34 H 0.072 0.928 35 H 0.110 0.890 36 H 0.074 0.926 37 H 0.198 0.802 38 H 0.145 0.855 39 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -15.783 12.953 6.301 21.368 hybrid contribution 0.946 -0.865 -0.371 1.335 sum -14.837 12.088 5.930 20.036 Atomic orbital electron populations 1.22331 0.96139 1.02114 1.00715 1.21663 0.94377 0.91682 0.95459 1.22475 1.01726 0.98888 1.00731 1.62342 1.30582 1.29832 1.01821 1.19783 0.82355 0.93630 0.97302 1.21080 0.94205 1.16904 1.22487 0.91860 1.24968 0.95218 0.97485 0.96775 1.69941 0.98888 1.41446 1.43440 0.86567 0.77078 0.82134 0.81683 1.20272 1.21362 1.20138 1.20737 0.87827 0.97745 0.95881 1.26302 1.02807 0.96317 1.03141 1.21654 0.88543 1.01525 0.99476 1.66179 1.15819 1.12146 1.21497 1.25892 1.00725 0.97641 1.04764 1.21283 0.94924 0.99917 0.96089 1.20345 0.73592 0.79836 0.86042 1.93212 1.65070 1.62889 1.95006 1.93197 1.41913 1.85624 1.95567 1.93243 1.91615 1.75052 1.55525 1.83889 1.07420 1.23014 1.45072 0.92796 0.93553 0.92326 0.88631 0.92307 0.92632 0.93343 0.98781 0.95059 0.92809 0.89036 0.92639 0.80170 0.85466 0.84618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.43 8.91 37.16 0.33 -2.10 16 2 C 0.08 1.39 2.65 -67.71 -0.18 1.21 16 3 C -0.18 -2.80 7.97 37.16 0.30 -2.50 16 4 N -0.52 -10.30 4.34 -229.52 -1.00 -11.30 16 5 C 0.19 4.71 4.64 -4.98 -0.02 4.68 16 6 C -0.51 -13.61 8.15 -34.44 -0.28 -13.89 16 7 H 0.06 1.69 7.43 -52.49 -0.39 1.30 16 8 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 9 N -0.90 -25.80 13.29 55.43 0.74 -25.06 16 10 Si 0.90 21.13 29.54 -169.99 -5.02 16.11 16 11 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 12 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 13 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 14 C 0.11 1.80 5.04 -4.97 -0.03 1.77 16 15 C -0.16 -2.42 4.55 -35.92 -0.16 -2.59 16 16 C 0.04 0.58 11.25 -19.19 -0.22 0.36 16 17 N -0.44 -6.37 10.54 -11.86 -0.13 -6.50 16 18 C -0.01 -0.17 6.11 -13.46 -0.08 -0.25 16 19 C -0.08 -0.68 5.85 -27.88 -0.16 -0.85 16 20 C 0.46 4.47 3.15 37.16 0.12 4.59 16 21 F -0.18 -1.93 17.02 2.25 0.04 -1.89 16 22 F -0.18 -1.67 17.32 2.25 0.04 -1.63 16 23 F -0.17 -2.07 17.03 2.25 0.04 -2.03 16 24 S 0.15 1.86 18.80 -107.50 -2.02 -0.16 16 25 H 0.05 0.78 3.12 -28.08 -0.09 0.69 16 26 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 28 H 0.10 1.98 6.60 -51.93 -0.34 1.64 16 29 H 0.06 0.99 7.53 -51.93 -0.39 0.60 16 30 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.05 0.68 4.59 -51.93 -0.24 0.45 16 32 H -0.01 -0.15 7.49 -51.93 -0.39 -0.53 16 33 H 0.03 0.81 7.83 -51.93 -0.41 0.41 16 34 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 35 H 0.09 1.50 7.73 -51.93 -0.40 1.10 16 36 H 0.06 0.88 5.23 -51.93 -0.27 0.61 16 37 H 0.18 2.60 8.06 -52.48 -0.42 2.17 16 38 H 0.13 0.72 8.14 -51.93 -0.42 0.29 16 39 H 0.14 0.96 8.14 -51.93 -0.42 0.54 16 LS Contribution 337.58 15.07 5.09 5.09 Total: -1.00 -29.32 337.58 -7.30 -36.62 By element: Atomic # 1 Polarization: 3.44 SS G_CDS: -4.59 Total: -1.15 kcal Atomic # 6 Polarization: -7.61 SS G_CDS: -0.49 Total: -8.09 kcal Atomic # 7 Polarization: -42.48 SS G_CDS: -0.38 Total: -42.86 kcal Atomic # 9 Polarization: -5.67 SS G_CDS: 0.12 Total: -5.55 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Atomic # 16 Polarization: 1.86 SS G_CDS: -2.02 Total: -0.16 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -29.32 -7.30 -36.62 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000891696683.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.210 kcal (2) G-P(sol) polarization free energy of solvation -29.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds