Wall clock time and date at job start Tue Mar 31 2020 14:00:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47326 * 2 1 4 4 H 1.08994 * 109.47102 * 305.00124 * 3 2 1 5 5 C 1.47205 * 109.47127 * 185.00215 * 3 2 1 6 6 N 3.43555 * 154.82719 * 351.56489 * 2 1 3 7 7 N 1.46499 * 109.46941 * 65.00353 * 3 2 1 8 8 C 1.46499 * 120.00290 * 60.00197 * 7 3 2 9 9 C 1.52996 * 109.47162 * 84.99846 * 8 7 3 10 10 S 1.65604 * 119.99484 * 239.99940 * 7 3 2 11 11 O 1.42103 * 106.39898 * 203.54112 * 10 7 3 12 12 O 1.42098 * 106.40175 * 336.45961 * 10 7 3 13 13 C 1.76195 * 107.21802 * 89.99972 * 10 7 3 14 14 C 1.38649 * 119.87859 * 269.72711 * 13 10 7 15 15 C 1.38613 * 120.50077 * 179.72506 * 14 13 10 16 16 C 1.37637 * 120.25049 * 0.54937 * 15 14 13 17 17 C 1.40699 * 119.74432 * 359.72592 * 16 15 14 18 18 C 1.41388 * 120.24249 * 180.02562 * 17 16 15 19 19 H 1.08009 * 119.99615 * 204.37611 * 18 17 16 20 20 C 1.39940 * 120.00411 * 24.37956 * 18 17 16 21 21 N 1.30820 * 119.99866 * 17.86805 * 20 18 17 22 22 Si 1.86802 * 120.00080 * 197.86869 * 20 18 17 23 23 H 1.48497 * 109.47147 * 89.99895 * 22 20 18 24 24 H 1.48498 * 109.47004 * 209.99993 * 22 20 18 25 25 H 1.48500 * 109.47092 * 330.00097 * 22 20 18 26 26 C 1.37603 * 119.87633 * 90.00194 * 13 10 7 27 27 H 1.08996 * 109.47244 * 60.00042 * 1 2 3 28 28 H 1.09006 * 109.46664 * 300.00220 * 1 2 3 29 29 H 1.08999 * 109.47650 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.47176 * 119.99852 * 2 1 3 31 31 H 1.09000 * 109.47335 * 239.99644 * 2 1 3 32 32 H 1.09001 * 109.47028 * 204.99837 * 8 7 3 33 33 H 1.09000 * 109.46688 * 324.99688 * 8 7 3 34 34 H 1.09000 * 109.47448 * 60.00308 * 9 8 7 35 35 H 1.08998 * 109.47014 * 179.97438 * 9 8 7 36 36 H 1.09001 * 109.47142 * 299.99922 * 9 8 7 37 37 H 1.08002 * 119.75114 * 359.97438 * 14 13 10 38 38 H 1.08011 * 119.87480 * 180.25317 * 15 14 13 39 39 H 1.07997 * 120.12960 * 179.75103 * 16 15 14 40 40 H 0.97003 * 120.00258 * 180.02562 * 21 20 18 41 41 H 1.08010 * 120.12396 * 359.97033 * 26 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5071 1.4442 -0.1210 6 7 4.6392 1.4455 -0.2144 7 7 1.6525 2.0974 1.2518 8 6 2.1140 1.5589 2.5337 9 6 3.5063 2.1105 2.8471 10 16 0.6928 3.4466 1.2178 11 8 0.9402 4.1456 2.4301 12 8 0.8673 4.0308 -0.0657 13 6 -0.9801 2.8986 1.2918 14 6 -1.6727 2.6341 0.1201 15 6 -2.9874 2.1970 0.1635 16 6 -3.6236 2.0315 1.3727 17 6 -2.9325 2.3025 2.5679 18 6 -3.5757 2.1356 3.8159 19 1 -3.2316 2.6869 4.6787 20 6 -4.6579 1.2562 3.9334 21 7 -4.8602 0.3422 3.0196 22 14 -5.8137 1.3876 5.3951 23 1 -6.9244 2.3166 5.0659 24 1 -6.3673 0.0462 5.7104 25 1 -5.0681 1.9042 6.5708 26 6 -1.5962 2.7403 2.5119 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 1.8933 -0.5138 0.8900 31 1 1.8933 -0.5139 -0.8899 32 1 1.4209 1.8528 3.3220 33 1 2.1586 0.4713 2.4759 34 1 3.4617 3.1981 2.9049 35 1 3.8494 1.7102 3.8010 36 1 4.1994 1.8166 2.0588 37 1 -1.1829 2.7657 -0.8334 38 1 -3.5161 1.9899 -0.7554 39 1 -4.6492 1.6947 1.4040 40 1 -5.6105 -0.2671 3.1008 41 1 -1.0561 2.9508 3.4233 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000903668988.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:00:45 Heat of formation + Delta-G solvation = -45.499004 kcal Electronic energy + Delta-G solvation = -25955.273708 eV Core-core repulsion = 22347.418817 eV Total energy + Delta-G solvation = -3607.854891 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 322.114 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.67373 -39.35831 -38.38658 -36.94756 -36.81732 -35.61151 -34.18520 -31.82912 -31.52352 -31.05190 -28.09997 -27.25615 -24.28725 -23.59455 -22.70740 -22.33070 -20.48453 -19.78619 -19.04655 -18.69773 -17.65231 -16.95751 -16.82199 -16.47136 -16.10450 -15.61379 -15.15963 -15.04843 -14.90363 -14.60232 -14.45223 -14.32383 -14.23151 -13.84731 -13.66883 -13.35817 -13.29905 -13.21264 -13.08830 -13.06062 -13.00114 -12.77425 -12.64182 -12.45369 -12.41306 -12.18413 -12.01007 -11.77614 -11.63889 -11.44764 -11.24043 -11.07037 -10.35553 -9.73604 -9.44079 -8.66637 -6.36569 -0.65322 0.48218 0.94271 1.41434 1.44616 1.51455 1.52393 1.65670 2.16044 2.21482 2.60741 2.72155 2.80037 3.32286 3.57805 3.70450 3.92556 4.04952 4.28278 4.30692 4.39772 4.47179 4.55242 4.58075 4.71150 4.79484 4.94961 4.99304 5.00244 5.09405 5.12869 5.22736 5.26810 5.27556 5.35705 5.47556 5.52974 5.66230 5.69922 5.99500 6.02901 6.20004 6.40211 6.61820 6.88497 6.93730 8.30447 Molecular weight = 322.11amu Principal moments of inertia in cm(-1) A = 0.018430 B = 0.004244 C = 0.004147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1518.877314 B = 6596.667653 C = 6749.577968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.116 4.116 3 C 0.241 3.759 4 H 0.151 0.849 5 C 0.229 3.771 6 N -0.454 5.454 7 N -0.984 5.984 8 C 0.108 3.892 9 C -0.178 4.178 10 S 2.703 3.297 11 O -0.984 6.984 12 O -0.980 6.980 13 C -0.629 4.629 14 C -0.130 4.130 15 C -0.118 4.118 16 C -0.135 4.135 17 C 0.066 3.934 18 C -0.499 4.499 19 H 0.075 0.925 20 C 0.044 3.956 21 N -0.818 5.818 22 Si 0.973 3.027 23 H -0.265 1.265 24 H -0.267 1.267 25 H -0.262 1.262 26 C -0.138 4.138 27 H 0.066 0.934 28 H 0.050 0.950 29 H 0.066 0.934 30 H 0.088 0.912 31 H 0.108 0.892 32 H 0.087 0.913 33 H 0.112 0.888 34 H 0.046 0.954 35 H 0.089 0.911 36 H 0.053 0.947 37 H 0.135 0.865 38 H 0.125 0.875 39 H 0.109 0.891 40 H 0.290 0.710 41 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.796 -4.156 -4.005 8.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.156 4.156 3 C 0.132 3.868 4 H 0.168 0.832 5 C -0.091 4.091 6 N -0.131 5.131 7 N -0.821 5.821 8 C -0.016 4.016 9 C -0.237 4.237 10 S 2.799 3.201 11 O -0.975 6.975 12 O -0.970 6.970 13 C -0.719 4.719 14 C -0.151 4.151 15 C -0.138 4.138 16 C -0.155 4.155 17 C 0.063 3.937 18 C -0.529 4.529 19 H 0.093 0.907 20 C -0.172 4.172 21 N -0.444 5.444 22 Si 0.795 3.205 23 H -0.190 1.190 24 H -0.192 1.192 25 H -0.186 1.186 26 C -0.159 4.159 27 H 0.085 0.915 28 H 0.069 0.931 29 H 0.085 0.915 30 H 0.107 0.893 31 H 0.126 0.874 32 H 0.105 0.895 33 H 0.130 0.870 34 H 0.065 0.935 35 H 0.108 0.892 36 H 0.072 0.928 37 H 0.153 0.847 38 H 0.143 0.857 39 H 0.127 0.873 40 H 0.101 0.899 41 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 8.673 -3.484 -4.230 10.259 hybrid contribution -1.684 -0.289 0.907 1.934 sum 6.989 -3.773 -3.324 8.610 Atomic orbital electron populations 1.21964 0.94186 1.02969 1.02957 1.21872 0.96822 0.91436 1.05483 1.18725 0.81152 0.98903 0.88033 0.83162 1.29564 0.95241 0.92154 0.92110 1.81186 1.13565 1.09441 1.08903 1.57596 1.64566 1.48096 1.11874 1.21552 0.95993 1.01424 0.82600 1.22323 0.96908 1.01454 1.02967 1.01368 0.73640 0.72728 0.72357 1.93510 1.85514 1.70625 1.47832 1.93493 1.86553 1.74958 1.41977 1.29963 1.22738 1.19431 0.99813 1.20402 0.95595 1.03580 0.95478 1.21074 0.95316 1.00116 0.97252 1.21623 0.99681 1.02000 0.92225 1.17939 0.91165 0.90611 0.93995 1.19816 1.13824 1.22932 0.96293 0.90727 1.26560 0.98044 0.92492 1.00141 1.69796 1.27047 1.12569 1.34957 0.85317 0.78225 0.78699 0.78251 1.18983 1.19191 1.18564 1.20775 0.95126 1.05180 0.94805 0.91539 0.93103 0.91470 0.89330 0.87417 0.89491 0.86958 0.93503 0.89217 0.92844 0.84683 0.85689 0.87310 0.89925 0.87474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.50 8.93 71.98 0.64 -2.86 16 2 C -0.12 -1.89 5.31 30.59 0.16 -1.73 16 3 C 0.24 5.01 2.48 43.19 0.11 5.12 16 4 H 0.15 2.87 6.91 -2.39 -0.02 2.85 16 5 C 0.23 5.32 12.62 89.44 1.13 6.45 16 6 N -0.45 -12.34 17.77 20.01 0.36 -11.99 16 7 N -0.98 -25.17 2.17 -502.87 -1.09 -26.27 16 8 C 0.11 2.47 5.74 86.38 0.50 2.97 16 9 C -0.18 -4.06 9.93 71.98 0.71 -3.34 16 10 S 2.70 91.01 5.63 -56.49 -0.32 90.69 16 11 O -0.98 -38.50 16.24 -128.00 -2.08 -40.58 16 12 O -0.98 -34.63 15.82 -128.00 -2.03 -36.66 16 13 C -0.63 -23.93 4.55 22.22 0.10 -23.83 16 14 C -0.13 -4.67 7.47 22.46 0.17 -4.51 16 15 C -0.12 -4.61 10.02 22.22 0.22 -4.38 16 16 C -0.14 -6.26 8.70 22.73 0.20 -6.07 16 17 C 0.07 3.23 5.58 -21.29 -0.12 3.11 16 18 C -0.50 -24.94 9.05 23.46 0.21 -24.73 16 19 H 0.07 3.67 7.91 -2.91 -0.02 3.65 16 20 C 0.04 2.02 5.14 85.26 0.44 2.46 16 21 N -0.82 -38.64 10.95 21.82 0.24 -38.40 16 22 Si 0.97 35.76 29.60 68.60 2.03 37.79 16 23 H -0.26 -9.57 7.11 99.48 0.71 -8.87 16 24 H -0.27 -9.30 7.11 99.48 0.71 -8.60 16 25 H -0.26 -9.55 7.11 99.48 0.71 -8.84 16 26 C -0.14 -6.08 9.26 22.73 0.21 -5.87 16 27 H 0.07 1.35 7.51 -2.39 -0.02 1.33 16 28 H 0.05 1.39 5.65 -2.38 -0.01 1.38 16 29 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 30 H 0.09 1.28 6.49 -2.38 -0.02 1.27 16 31 H 0.11 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.09 2.15 7.61 -2.39 -0.02 2.14 16 33 H 0.11 1.93 6.35 -2.39 -0.02 1.91 16 34 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 35 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 36 H 0.05 1.25 5.41 -2.39 -0.01 1.24 16 37 H 0.14 4.07 7.59 -2.91 -0.02 4.04 16 38 H 0.13 4.10 8.06 -2.90 -0.02 4.08 16 39 H 0.11 5.29 6.15 -2.91 -0.02 5.27 16 40 H 0.29 12.40 8.30 -92.71 -0.77 11.63 16 41 H 0.11 4.66 7.60 -2.91 -0.02 4.64 16 Total: -1.00 -60.94 348.40 2.85 -58.10 By element: Atomic # 1 Polarization: 23.49 SS G_CDS: 1.06 Total: 24.54 kcal Atomic # 6 Polarization: -61.90 SS G_CDS: 4.68 Total: -57.22 kcal Atomic # 7 Polarization: -76.16 SS G_CDS: -0.50 Total: -76.66 kcal Atomic # 8 Polarization: -73.13 SS G_CDS: -4.10 Total: -77.24 kcal Atomic # 14 Polarization: 35.76 SS G_CDS: 2.03 Total: 37.79 kcal Atomic # 16 Polarization: 91.01 SS G_CDS: -0.32 Total: 90.69 kcal Total: -60.94 2.85 -58.10 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000903668988.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.597 kcal (2) G-P(sol) polarization free energy of solvation -60.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.096 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds