Wall clock time and date at job start Tue Mar 31 2020 13:21:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.27646 * 125.77206 * 2 1 4 4 O 1.41376 * 113.17724 * 180.15284 * 3 2 1 5 5 C 1.44257 * 107.56890 * 343.06366 * 4 3 2 6 6 C 1.52998 * 111.01131 * 266.81618 * 5 4 3 7 7 C 1.50696 * 111.04428 * 142.96236 * 5 4 3 8 8 O 1.21298 * 120.00600 * 222.81965 * 7 5 4 9 9 N 1.34785 * 120.00133 * 42.82363 * 7 5 4 10 10 C 1.40084 * 120.00032 * 175.62965 * 9 7 5 11 11 C 1.38704 * 120.07822 * 34.59808 * 10 9 7 12 12 C 1.38190 * 120.02498 * 180.02562 * 11 10 9 13 13 C 1.38555 * 120.17197 * 0.02562 * 12 11 10 14 14 F 1.35102 * 119.92030 * 179.97438 * 13 12 11 15 15 C 1.38344 * 120.15463 * 359.97438 * 13 12 11 16 16 C 1.38744 * 119.97394 * 359.68434 * 15 13 12 17 17 O 1.35776 * 120.08378 * 180.29077 * 16 15 13 18 18 C 1.34811 * 117.00233 * 5.43621 * 17 16 15 19 19 H 1.07998 * 119.99544 * 354.95243 * 18 17 16 20 20 C 1.38637 * 119.99820 * 174.95051 * 18 17 16 21 21 N 1.31571 * 119.99603 * 179.97438 * 20 18 17 22 22 Si 1.86795 * 120.00236 * 0.02562 * 20 18 17 23 23 H 1.48502 * 109.47283 * 89.99903 * 22 20 18 24 24 H 1.48494 * 109.47152 * 209.99853 * 22 20 18 25 25 H 1.48501 * 109.47185 * 330.00249 * 22 20 18 26 26 C 1.51684 * 125.76912 * 180.30592 * 2 1 3 27 27 H 1.09008 * 109.46994 * 269.69720 * 1 2 3 28 28 H 1.08995 * 109.46990 * 149.69540 * 1 2 3 29 29 H 1.08997 * 109.46917 * 29.69333 * 1 2 3 30 30 H 1.08995 * 109.47498 * 172.15821 * 6 5 4 31 31 H 1.09001 * 109.47250 * 292.16388 * 6 5 4 32 32 H 1.09010 * 109.47165 * 52.16099 * 6 5 4 33 33 H 0.97003 * 119.99580 * 355.62920 * 9 7 5 34 34 H 1.08004 * 119.99299 * 359.97308 * 11 10 9 35 35 H 1.07991 * 119.91285 * 179.97438 * 12 11 10 36 36 H 1.07999 * 120.00750 * 179.97438 * 15 13 12 37 37 H 0.97001 * 119.99839 * 180.02562 * 21 20 18 38 38 H 1.09001 * 110.80777 * 313.52804 * 26 2 1 39 39 H 1.09002 * 110.80587 * 77.03254 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2532 1.0357 0.0000 4 8 3.6329 0.7274 -0.0035 5 6 3.7718 -0.6522 0.3947 6 6 3.9970 -0.7676 1.9036 7 6 4.8834 -1.3261 -0.3676 8 8 4.7272 -2.4473 -0.8033 9 7 6.0514 -0.6830 -0.5653 10 6 7.1162 -1.3420 -1.1932 11 6 6.8671 -2.2636 -2.1994 12 6 7.9183 -2.9134 -2.8177 13 6 9.2231 -2.6475 -2.4351 14 9 10.2470 -3.2860 -3.0427 15 6 9.4800 -1.7296 -1.4324 16 6 8.4297 -1.0684 -0.8123 17 8 8.6795 -0.1627 0.1680 18 6 9.9718 0.1317 0.4144 19 1 10.7553 -0.4050 -0.0997 20 6 10.2948 1.1234 1.3278 21 7 11.5560 1.4103 1.5686 22 14 8.9395 2.0511 2.2175 23 1 8.6021 1.3448 3.4795 24 1 9.4036 3.4268 2.5291 25 1 7.7352 2.1192 1.3513 26 6 2.3936 -1.2307 -0.0066 27 1 -0.3633 -0.0054 1.0277 28 1 -0.3633 -0.8872 -0.5185 29 1 -0.3633 0.8927 -0.5091 30 1 3.9595 -1.8165 2.1974 31 1 4.9727 -0.3537 2.1581 32 1 3.2191 -0.2147 2.4304 33 1 6.1545 0.2360 -0.2727 34 1 5.8510 -2.4742 -2.4992 35 1 7.7222 -3.6310 -3.6006 36 1 10.4980 -1.5244 -1.1358 37 1 11.7821 2.1039 2.2079 38 1 2.0506 -1.9590 0.7283 39 1 2.4344 -1.6732 -1.0019 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000903966355.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:21:01 Heat of formation + Delta-G solvation = -74.264993 kcal Electronic energy + Delta-G solvation = -27196.237853 eV Core-core repulsion = 23020.922399 eV Total energy + Delta-G solvation = -4175.315454 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.116 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.91151 -42.33771 -41.27046 -40.05882 -38.19858 -35.91598 -35.02399 -34.52614 -33.56370 -31.32399 -30.21907 -29.32342 -28.45642 -27.41606 -25.41412 -23.85592 -23.03453 -21.59847 -20.74142 -20.21353 -19.75869 -18.82249 -18.30193 -17.41005 -17.14906 -16.98360 -16.75249 -16.55050 -16.27708 -15.93594 -15.71334 -15.44516 -15.35593 -15.15079 -15.06103 -14.54160 -14.31629 -14.04972 -13.74436 -13.68883 -13.55246 -13.43286 -13.24138 -13.18427 -13.12841 -12.68902 -12.46964 -12.44640 -12.22027 -11.78873 -11.68340 -11.34881 -11.07643 -10.98287 -10.53004 -9.70843 -8.97508 -8.57202 -6.31365 0.00874 0.32634 0.79069 1.17786 1.29658 1.32673 1.47231 1.68576 1.93480 2.21068 2.51769 2.72977 2.93312 3.03906 3.23067 3.29540 3.30714 3.48867 3.65644 3.83190 4.08791 4.18874 4.35900 4.40982 4.43063 4.53166 4.62049 4.69082 4.74996 4.80100 4.84985 4.94021 5.04371 5.09774 5.18694 5.29616 5.31616 5.52928 5.74359 5.97334 6.14870 6.32817 6.74458 6.77942 7.37220 8.53568 Molecular weight = 322.12amu Principal moments of inertia in cm(-1) A = 0.010834 B = 0.004846 C = 0.003488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2583.777127 B = 5776.419887 C = 8026.626829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.110 3.890 3 N -0.328 5.328 4 O -0.223 6.223 5 C 0.049 3.951 6 C -0.155 4.155 7 C 0.533 3.467 8 O -0.533 6.533 9 N -0.643 5.643 10 C 0.060 3.940 11 C -0.047 4.047 12 C -0.192 4.192 13 C 0.126 3.874 14 F -0.143 7.143 15 C -0.257 4.257 16 C 0.143 3.857 17 O -0.221 6.221 18 C -0.403 4.403 19 H 0.084 0.916 20 C 0.020 3.980 21 N -0.914 5.914 22 Si 0.962 3.038 23 H -0.264 1.264 24 H -0.269 1.269 25 H -0.253 1.253 26 C -0.128 4.128 27 H 0.113 0.887 28 H 0.115 0.885 29 H 0.086 0.914 30 H 0.097 0.903 31 H 0.059 0.941 32 H 0.090 0.910 33 H 0.416 0.584 34 H 0.160 0.840 35 H 0.166 0.834 36 H 0.129 0.871 37 H 0.287 0.713 38 H 0.143 0.857 39 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.661 -5.605 -2.085 24.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.083 4.083 3 N -0.075 5.075 4 O -0.237 6.237 5 C 0.005 3.995 6 C -0.212 4.212 7 C 0.319 3.681 8 O -0.411 6.411 9 N -0.287 5.287 10 C -0.035 4.035 11 C -0.067 4.067 12 C -0.212 4.212 13 C 0.106 3.894 14 F -0.122 7.122 15 C -0.277 4.277 16 C 0.091 3.909 17 O -0.127 6.127 18 C -0.479 4.479 19 H 0.102 0.898 20 C -0.180 4.180 21 N -0.554 5.554 22 Si 0.784 3.216 23 H -0.189 1.189 24 H -0.194 1.194 25 H -0.177 1.177 26 C -0.167 4.167 27 H 0.131 0.869 28 H 0.134 0.866 29 H 0.105 0.895 30 H 0.116 0.884 31 H 0.078 0.922 32 H 0.109 0.891 33 H 0.253 0.747 34 H 0.178 0.822 35 H 0.183 0.817 36 H 0.147 0.853 37 H 0.097 0.903 38 H 0.161 0.839 39 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -23.484 -4.935 -2.168 24.094 hybrid contribution 1.333 0.046 0.499 1.424 sum -22.151 -4.889 -1.669 22.745 Atomic orbital electron populations 1.20722 0.81558 1.06049 1.06035 1.27076 0.99927 0.91007 0.90271 1.77990 0.87780 1.24321 1.17376 1.91324 1.18403 1.25897 1.88126 1.23214 0.95216 0.84043 0.97017 1.22144 1.03926 1.04983 0.90187 1.20358 0.82885 0.85851 0.79033 1.90672 1.81239 1.19216 1.49928 1.43250 1.11217 1.16660 1.57584 1.17126 0.83761 1.03192 0.99407 1.20894 1.00524 0.93790 0.91467 1.20961 0.89008 1.05871 1.05339 1.17513 0.84954 0.93500 0.93410 1.91445 1.58836 1.80152 1.81757 1.20992 1.00457 1.03552 1.02741 1.18863 0.92155 0.91036 0.88846 1.83495 1.28639 1.53567 1.47025 1.20681 0.79780 1.21157 1.26261 0.89847 1.25222 0.99057 0.96654 0.97089 1.69723 1.18026 1.32457 1.35154 0.85342 0.79132 0.77954 0.79222 1.18923 1.19420 1.17722 1.23070 0.87767 0.98848 1.07015 0.86854 0.86640 0.89527 0.88393 0.92177 0.89145 0.74696 0.82232 0.81694 0.85290 0.90310 0.83930 0.86831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.49 10.49 71.24 0.75 0.26 16 2 C 0.11 1.74 7.45 46.90 0.35 2.08 16 3 N -0.33 -8.12 12.45 -40.62 -0.51 -8.63 16 4 O -0.22 -6.62 11.57 -38.28 -0.44 -7.06 16 5 C 0.05 1.21 1.23 -10.94 -0.01 1.20 16 6 C -0.15 -3.36 8.96 71.98 0.64 -2.72 16 7 C 0.53 16.46 6.62 87.65 0.58 17.04 16 8 O -0.53 -17.28 13.45 -3.08 -0.04 -17.32 16 9 N -0.64 -22.80 5.15 -303.04 -1.56 -24.36 16 10 C 0.06 2.32 6.33 38.23 0.24 2.56 16 11 C -0.05 -1.59 8.70 22.37 0.19 -1.39 16 12 C -0.19 -6.21 10.02 22.33 0.22 -5.98 16 13 C 0.13 4.79 7.29 22.37 0.16 4.95 16 14 F -0.14 -5.26 17.26 44.97 0.78 -4.48 16 15 C -0.26 -11.39 9.14 22.42 0.20 -11.18 16 16 C 0.14 6.50 6.66 22.69 0.15 6.65 16 17 O -0.22 -11.22 8.14 -22.84 -0.19 -11.40 16 18 C -0.40 -22.71 9.95 67.92 0.68 -22.03 16 19 H 0.08 4.98 5.44 -2.91 -0.02 4.96 16 20 C 0.02 1.11 5.49 84.83 0.47 1.57 16 21 N -0.91 -53.07 13.96 21.61 0.30 -52.77 16 22 Si 0.96 43.25 28.62 68.60 1.96 45.21 16 23 H -0.26 -11.44 7.11 99.48 0.71 -10.73 16 24 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 25 H -0.25 -11.08 7.11 99.48 0.71 -10.37 16 26 C -0.13 -2.14 5.84 30.76 0.18 -1.96 16 27 H 0.11 0.25 8.14 -2.38 -0.02 0.23 16 28 H 0.12 0.11 8.14 -2.39 -0.02 0.09 16 29 H 0.09 0.54 8.14 -2.39 -0.02 0.52 16 30 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 31 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 32 H 0.09 1.65 8.14 -2.38 -0.02 1.64 16 33 H 0.42 15.06 8.24 -92.71 -0.76 14.30 16 34 H 0.16 4.94 6.19 -2.91 -0.02 4.92 16 35 H 0.17 4.12 8.06 -2.92 -0.02 4.09 16 36 H 0.13 6.24 5.64 -2.91 -0.02 6.22 16 37 H 0.29 15.29 8.31 -92.71 -0.77 14.52 16 38 H 0.14 1.48 7.91 -2.39 -0.02 1.46 16 39 H 0.11 1.99 7.48 -2.39 -0.02 1.97 16 Total: -1.00 -68.96 342.22 5.47 -63.49 By element: Atomic # 1 Polarization: 25.92 SS G_CDS: 0.36 Total: 26.28 kcal Atomic # 6 Polarization: -13.77 SS G_CDS: 4.81 Total: -8.96 kcal Atomic # 7 Polarization: -84.00 SS G_CDS: -1.77 Total: -85.76 kcal Atomic # 8 Polarization: -35.11 SS G_CDS: -0.67 Total: -35.78 kcal Atomic # 9 Polarization: -5.26 SS G_CDS: 0.78 Total: -4.48 kcal Atomic # 14 Polarization: 43.25 SS G_CDS: 1.96 Total: 45.21 kcal Total: -68.96 5.47 -63.49 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000903966355.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.774 kcal (2) G-P(sol) polarization free energy of solvation -68.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.491 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds