Wall clock time and date at job start Tue Mar 31 2020 13:02:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.37477 * 123.35218 * 2 1 4 4 C 1.33818 * 115.10040 * 179.97438 * 3 2 1 5 5 S 1.70618 * 110.95655 * 0.02562 * 4 3 2 6 6 C 1.36648 * 123.35280 * 179.97438 * 2 1 3 7 7 C 1.46587 * 125.45531 * 0.02562 * 6 2 1 8 8 O 1.21700 * 119.99818 * 313.32739 * 7 6 2 9 9 N 1.34774 * 119.99568 * 133.33160 * 7 6 2 10 10 C 1.47132 * 121.04940 * 184.14487 * 9 7 6 11 11 C 1.53229 * 108.72406 * 127.77809 * 10 9 7 12 12 O 1.43104 * 109.34728 * 54.12702 * 11 10 9 13 13 C 1.42489 * 113.97532 * 300.04499 * 12 11 10 14 14 C 1.53466 * 113.76910 * 286.79423 * 13 12 11 15 15 N 1.47666 * 85.97154 * 268.71934 * 14 13 12 16 16 C 1.36941 * 134.45639 * 155.74365 * 15 14 13 17 17 H 1.08005 * 119.99844 * 179.97438 * 16 15 14 18 18 C 1.38810 * 120.00166 * 359.95284 * 16 15 14 19 19 N 1.31615 * 119.99898 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 120.00059 * 179.97438 * 18 16 15 21 21 H 1.48508 * 109.47134 * 89.99810 * 20 18 16 22 22 H 1.48497 * 109.47013 * 209.99479 * 20 18 16 23 23 H 1.48494 * 109.47113 * 330.00195 * 20 18 16 24 24 C 1.47675 * 91.09021 * 335.70951 * 15 14 13 25 25 C 1.47338 * 121.06117 * 3.86824 * 9 7 6 26 26 H 1.09000 * 109.47240 * 90.02041 * 1 2 3 27 27 H 1.08998 * 109.47414 * 210.02034 * 1 2 3 28 28 H 1.09003 * 109.47042 * 330.02233 * 1 2 3 29 29 H 1.07996 * 122.44985 * 359.69918 * 3 2 1 30 30 H 1.08001 * 124.52085 * 179.97438 * 4 3 2 31 31 H 1.08996 * 109.59618 * 247.54686 * 10 9 7 32 32 H 1.08995 * 109.59898 * 8.00653 * 10 9 7 33 33 H 1.08997 * 109.48973 * 174.09086 * 11 10 9 34 34 H 1.09003 * 109.48775 * 294.14069 * 11 10 9 35 35 H 1.09003 * 113.79438 * 22.97891 * 14 13 12 36 36 H 1.09000 * 113.79750 * 154.45581 * 14 13 12 37 37 H 0.97005 * 120.00255 * 180.02562 * 19 18 16 38 38 H 1.09004 * 113.78534 * 270.03180 * 24 15 14 39 39 H 1.08996 * 113.89831 * 138.57375 * 24 15 14 40 40 H 1.08999 * 109.74264 * 348.03233 * 25 9 7 41 41 H 1.08999 * 109.74602 * 108.75059 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2628 1.1484 0.0000 4 6 3.5871 0.9563 0.0005 5 16 3.9623 -0.7081 0.0004 6 6 2.2582 -1.1414 0.0005 7 6 1.7283 -2.5082 0.0006 8 8 0.8338 -2.8139 0.7670 9 7 2.2319 -3.4261 -0.8481 10 6 1.6578 -4.7782 -0.9314 11 6 1.3393 -5.0878 -2.3979 12 8 2.5139 -4.8879 -3.1906 13 6 3.0272 -3.5597 -3.1403 14 6 2.1834 -2.5406 -3.9179 15 7 3.0592 -2.8481 -5.0664 16 6 2.9237 -2.7607 -6.4263 17 1 3.7384 -3.0573 -7.0703 18 6 1.7391 -2.2915 -6.9770 19 7 0.7459 -1.9310 -6.1923 20 14 1.5546 -2.1717 -8.8320 21 1 1.0041 -3.4467 -9.3581 22 1 0.6307 -1.0583 -9.1666 23 1 2.8821 -1.9151 -9.4460 24 6 4.1401 -3.2867 -4.1608 25 6 3.3709 -3.1057 -1.7261 26 1 -0.3634 -0.0004 -1.0277 27 1 -0.3634 -0.8898 0.5141 28 1 -0.3633 0.8902 0.5135 29 1 1.8201 2.1334 -0.0048 30 1 4.3205 1.7491 0.0002 31 1 2.3765 -5.5046 -0.5523 32 1 0.7426 -4.8238 -0.3411 33 1 1.0116 -6.1235 -2.4881 34 1 0.5478 -4.4242 -2.7461 35 1 1.1469 -2.8459 -4.0613 36 1 2.2807 -1.5185 -3.5520 37 1 -0.0821 -1.6034 -6.5771 38 1 4.8194 -2.4864 -3.8671 39 1 4.6596 -4.1845 -4.4956 40 1 3.5502 -2.0306 -1.7189 41 1 4.2614 -3.6305 -1.3804 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053129711.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:02:07 Heat of formation + Delta-G solvation = 30.014371 kcal Electronic energy + Delta-G solvation = -26104.241797 eV Core-core repulsion = 22499.661412 eV Total energy + Delta-G solvation = -3604.580385 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 322.114 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.47224 -39.03813 -37.72983 -36.05578 -34.55383 -32.28778 -31.08490 -30.17330 -28.63790 -27.34687 -26.00847 -25.12210 -23.83061 -23.07851 -22.02139 -20.41506 -18.99675 -18.21415 -18.09554 -16.85658 -16.47157 -16.06394 -15.55217 -15.18041 -15.03615 -14.87960 -14.26286 -14.10591 -13.86906 -13.52817 -13.47087 -13.28162 -13.02773 -12.71347 -12.42541 -12.33197 -12.15942 -11.89369 -11.58515 -11.36699 -11.17367 -10.99001 -10.87001 -10.83727 -10.63835 -10.26230 -10.04842 -9.76517 -9.60291 -9.27987 -8.84689 -8.77297 -8.35175 -8.26689 -6.90177 -5.76469 -3.09013 0.60408 1.39213 1.85178 2.44422 2.81076 3.19177 3.39640 3.44053 3.46052 4.05325 4.43160 4.53688 4.84099 4.94192 5.08171 5.12839 5.20699 5.22902 5.26742 5.36930 5.44752 5.50696 5.57161 5.67700 5.71698 5.77053 5.91908 5.93677 5.99156 6.09953 6.25752 6.34060 6.42261 6.44217 6.46401 6.48289 6.94794 7.16853 7.35793 7.48625 7.79377 7.96577 8.13007 9.03190 9.70162 10.55627 11.40493 Molecular weight = 322.11amu Principal moments of inertia in cm(-1) A = 0.013470 B = 0.004760 C = 0.004264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2078.262660 B = 5880.421768 C = 6564.701741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.028 4.028 3 C -0.142 4.142 4 C -0.239 4.239 5 S 0.206 5.794 6 C -0.267 4.267 7 C 0.600 3.400 8 O -0.534 6.534 9 N -0.602 5.602 10 C 0.081 3.919 11 C 0.047 3.953 12 O -0.341 6.341 13 C 0.051 3.949 14 C 0.152 3.848 15 N -0.601 5.601 16 C -0.219 4.219 17 H 0.081 0.919 18 C -0.007 4.007 19 N -0.921 5.921 20 Si 0.912 3.088 21 H -0.288 1.288 22 H -0.291 1.291 23 H -0.281 1.281 24 C 0.136 3.864 25 C 0.081 3.919 26 H 0.078 0.922 27 H 0.084 0.916 28 H 0.069 0.931 29 H 0.143 0.857 30 H 0.168 0.832 31 H 0.075 0.925 32 H 0.100 0.900 33 H 0.103 0.897 34 H 0.061 0.939 35 H 0.077 0.923 36 H 0.031 0.969 37 H 0.253 0.747 38 H 0.050 0.950 39 H 0.057 0.943 40 H 0.099 0.901 41 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.948 1.871 14.863 15.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.042 4.042 3 C -0.173 4.173 4 C -0.376 4.376 5 S 0.474 5.526 6 C -0.387 4.387 7 C 0.387 3.613 8 O -0.412 6.412 9 N -0.334 5.334 10 C -0.041 4.041 11 C -0.030 4.030 12 O -0.259 6.259 13 C 0.009 3.991 14 C 0.026 3.974 15 N -0.327 5.327 16 C -0.347 4.347 17 H 0.099 0.901 18 C -0.204 4.204 19 N -0.569 5.569 20 Si 0.743 3.257 21 H -0.215 1.215 22 H -0.217 1.217 23 H -0.207 1.207 24 C 0.009 3.991 25 C -0.044 4.044 26 H 0.096 0.904 27 H 0.102 0.898 28 H 0.088 0.912 29 H 0.161 0.839 30 H 0.185 0.815 31 H 0.093 0.907 32 H 0.118 0.882 33 H 0.121 0.879 34 H 0.080 0.920 35 H 0.095 0.905 36 H 0.048 0.952 37 H 0.063 0.937 38 H 0.067 0.933 39 H 0.075 0.925 40 H 0.117 0.883 41 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 5.788 0.822 14.847 15.957 hybrid contribution -1.427 1.448 -0.969 2.252 sum 4.362 2.269 13.878 14.723 Atomic orbital electron populations 1.20690 0.89015 1.03786 1.03231 1.19386 0.97645 0.90340 0.96868 1.19876 0.92554 0.99551 1.05322 1.25292 1.00702 1.02191 1.09434 1.83084 1.03711 0.97808 1.67970 1.24241 0.97603 0.97243 1.19569 1.16936 0.81668 0.82776 0.79905 1.90770 1.30841 1.79673 1.39960 1.48026 1.33706 1.12685 1.39033 1.22333 1.00497 0.82434 0.98855 1.22902 0.89213 1.02305 0.88606 1.87931 1.42600 1.27167 1.68153 1.23569 0.99228 0.85318 0.90989 1.22670 0.97207 0.93282 0.84220 1.45738 1.11038 1.75346 1.00607 1.18986 0.99217 1.37048 0.79436 0.90086 1.24765 0.96263 1.01411 0.97913 1.69811 1.04698 1.49206 1.33148 0.86119 0.77464 0.77320 0.84840 1.21515 1.21701 1.20658 1.22496 0.91390 0.97303 0.87867 1.22650 0.88262 1.02615 0.90826 0.90378 0.89752 0.91187 0.83886 0.81482 0.90690 0.88217 0.87933 0.92049 0.90488 0.95178 0.93694 0.93293 0.92470 0.88344 0.90646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.43 9.94 36.00 0.36 -1.07 16 2 C -0.03 -0.39 5.90 -105.48 -0.62 -1.01 16 3 C -0.14 -1.68 9.97 -41.41 -0.41 -2.10 16 4 C -0.24 -2.60 10.92 29.18 0.32 -2.28 16 5 S 0.21 2.43 20.09 -107.50 -2.16 0.27 16 6 C -0.27 -3.98 5.40 -36.79 -0.20 -4.18 16 7 C 0.60 9.93 7.24 -12.89 -0.09 9.84 16 8 O -0.53 -9.84 14.96 5.19 0.08 -9.76 16 9 N -0.60 -9.44 3.03 -174.27 -0.53 -9.97 16 10 C 0.08 1.15 6.59 -3.58 -0.02 1.13 16 11 C 0.05 0.76 6.88 37.28 0.26 1.01 16 12 O -0.34 -6.60 10.52 -35.23 -0.37 -6.97 16 13 C 0.05 0.97 1.21 -90.52 -0.11 0.86 16 14 C 0.15 3.59 6.64 -3.17 -0.02 3.57 16 15 N -0.60 -15.42 3.70 -180.32 -0.67 -16.09 16 16 C -0.22 -6.17 10.70 -15.06 -0.16 -6.33 16 17 H 0.08 2.19 7.83 -52.48 -0.41 1.78 16 18 C -0.01 -0.20 5.50 -17.43 -0.10 -0.30 16 19 N -0.92 -27.40 11.39 55.49 0.63 -26.77 16 20 Si 0.91 22.23 29.55 -169.99 -5.02 17.21 16 21 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 22 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 23 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 24 C 0.14 2.73 8.33 -3.17 -0.03 2.71 16 25 C 0.08 1.25 5.08 -3.87 -0.02 1.23 16 26 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 27 H 0.08 1.23 6.39 -51.93 -0.33 0.90 16 28 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 29 H 0.14 1.38 8.06 -52.49 -0.42 0.95 16 30 H 0.17 1.34 8.06 -52.49 -0.42 0.92 16 31 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.10 1.39 7.09 -51.93 -0.37 1.02 16 33 H 0.10 1.35 8.14 -51.93 -0.42 0.92 16 34 H 0.06 1.11 7.20 -51.93 -0.37 0.73 16 35 H 0.08 2.07 6.31 -51.93 -0.33 1.74 16 36 H 0.03 0.73 7.92 -51.93 -0.41 0.32 16 37 H 0.25 7.31 8.31 -40.82 -0.34 6.98 16 38 H 0.05 0.88 8.09 -51.93 -0.42 0.46 16 39 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 40 H 0.10 1.49 4.25 -37.09 -0.16 1.33 16 41 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 LS Contribution 343.23 15.07 5.17 5.17 Total: -1.00 -33.58 343.23 -9.04 -42.62 By element: Atomic # 1 Polarization: 6.53 SS G_CDS: -5.32 Total: 1.22 kcal Atomic # 6 Polarization: 3.92 SS G_CDS: -0.85 Total: 3.07 kcal Atomic # 7 Polarization: -52.26 SS G_CDS: -0.56 Total: -52.82 kcal Atomic # 8 Polarization: -16.44 SS G_CDS: -0.29 Total: -16.73 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.21 kcal Atomic # 16 Polarization: 2.43 SS G_CDS: -2.16 Total: 0.27 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -33.58 -9.04 -42.62 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053129711.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.633 kcal (2) G-P(sol) polarization free energy of solvation -33.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.619 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds