Wall clock time and date at job start Tue Mar 31 2020 12:49:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 S 1.70453 * 124.59246 * 2 1 4 4 C 1.75504 * 92.44470 * 180.22413 * 3 2 1 5 5 C 1.32775 * 110.57589 * 359.80538 * 4 3 2 6 6 C 1.36009 * 124.59085 * 179.86255 * 2 1 3 7 7 C 1.47186 * 123.46024 * 359.97438 * 6 2 1 8 8 O 1.21638 * 120.00046 * 22.55949 * 7 6 2 9 9 N 1.34772 * 119.99859 * 202.56759 * 7 6 2 10 10 C 1.47130 * 121.06212 * 184.50138 * 9 7 6 11 11 C 1.53226 * 108.72772 * 232.31649 * 10 9 7 12 12 O 1.43116 * 109.34949 * 305.79799 * 11 10 9 13 13 C 1.42366 * 113.99444 * 59.78530 * 12 11 10 14 14 C 1.52925 * 114.29946 * 74.95034 * 13 12 11 15 15 N 1.47167 * 87.84041 * 88.27674 * 14 13 12 16 16 C 1.36937 * 135.99916 * 206.64205 * 15 14 13 17 17 H 1.07999 * 119.99824 * 353.39843 * 16 15 14 18 18 C 1.38810 * 119.99823 * 173.40007 * 16 15 14 19 19 N 1.31618 * 119.99464 * 177.43604 * 18 16 15 20 20 Si 1.86801 * 120.00356 * 357.44082 * 18 16 15 21 21 H 1.48496 * 109.47242 * 175.62985 * 20 18 16 22 22 H 1.48505 * 109.46780 * 295.62605 * 20 18 16 23 23 H 1.48496 * 109.47322 * 55.62520 * 20 18 16 24 24 C 1.47180 * 88.00679 * 26.90309 * 15 14 13 25 25 C 1.47359 * 121.06224 * 4.51975 * 9 7 6 26 26 H 1.09003 * 109.47192 * 270.14199 * 1 2 3 27 27 H 1.08998 * 109.47098 * 30.13507 * 1 2 3 28 28 H 1.08993 * 109.47600 * 150.13654 * 1 2 3 29 29 H 1.07996 * 124.71023 * 179.80151 * 4 3 2 30 30 H 1.07996 * 123.45796 * 179.97438 * 5 4 3 31 31 H 1.09002 * 109.59730 * 112.53857 * 10 9 7 32 32 H 1.09005 * 109.71654 * 352.16660 * 10 9 7 33 33 H 1.09003 * 109.48927 * 185.83850 * 11 10 9 34 34 H 1.08991 * 109.49228 * 65.76629 * 11 10 9 35 35 H 1.09007 * 113.48911 * 333.53744 * 14 13 12 36 36 H 1.08997 * 113.54627 * 203.03146 * 14 13 12 37 37 H 0.97000 * 120.00430 * 354.98419 * 19 18 16 38 38 H 1.08997 * 113.49247 * 87.83227 * 24 15 14 39 39 H 1.08996 * 113.49520 * 218.35284 * 24 15 14 40 40 H 1.08994 * 109.74396 * 12.09220 * 25 9 7 41 41 H 1.09000 * 109.74476 * 251.37077 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.4747 1.4032 0.0000 4 6 3.9607 0.4693 -0.0069 5 6 3.6944 -0.8314 -0.0047 6 6 2.2792 -1.1197 0.0027 7 6 1.7290 -2.4848 0.0065 8 8 0.5992 -2.6864 -0.3967 9 7 2.4770 -3.5115 0.4569 10 6 1.9886 -4.8973 0.3806 11 6 2.1025 -5.5361 1.7687 12 8 3.4462 -5.4032 2.2431 13 6 3.8892 -4.0550 2.3572 14 6 3.3117 -3.3023 3.5566 15 7 4.4442 -3.8082 4.3487 16 6 4.6775 -4.0833 5.6697 17 1 3.9387 -3.8248 6.4137 18 6 5.8636 -4.6946 6.0523 19 7 6.1098 -4.9133 7.3266 20 14 7.1102 -5.2066 4.7588 21 1 8.3268 -5.7357 5.4259 22 1 6.5217 -6.2609 3.8942 23 1 7.4730 -4.0305 3.9280 24 6 5.2184 -3.8823 3.0991 25 6 3.8099 -3.2819 1.0418 26 1 -0.3634 0.0025 1.0277 27 1 -0.3633 0.8888 -0.5159 28 1 -0.3634 -0.8911 -0.5117 29 1 4.9537 0.8938 -0.0122 30 1 4.4576 -1.5955 -0.0084 31 1 2.5932 -5.4593 -0.3312 32 1 0.9469 -4.9030 0.0599 33 1 1.8421 -6.5927 1.7053 34 1 1.4225 -5.0343 2.4569 35 1 2.3457 -3.6854 3.8859 36 1 3.3163 -2.2193 3.4344 37 1 5.4976 -4.5829 8.0026 38 1 5.7359 -2.9551 2.8530 39 1 5.8670 -4.7563 3.0411 40 1 3.9506 -2.2178 1.2310 41 1 4.5790 -3.6398 0.3573 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053245608.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:49:52 Heat of formation + Delta-G solvation = 53.140067 kcal Electronic energy + Delta-G solvation = -26024.704218 eV Core-core repulsion = 22421.126638 eV Total energy + Delta-G solvation = -3603.577580 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 322.114 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.91168 -39.35109 -37.27621 -36.44625 -34.84135 -32.48054 -32.11799 -30.56134 -28.63674 -27.04783 -26.11874 -25.70245 -24.46595 -22.62605 -21.94028 -20.71854 -19.21271 -19.04930 -17.55329 -17.46524 -16.72200 -16.44803 -15.90237 -15.73120 -15.28491 -14.89456 -14.51752 -14.17016 -13.95606 -13.71974 -13.67573 -13.49065 -13.22846 -13.08672 -12.86723 -12.73007 -12.47460 -11.89570 -11.80446 -11.74124 -11.40055 -11.17479 -11.12306 -10.73353 -10.60472 -10.39198 -9.86804 -9.78003 -9.13077 -9.09191 -8.97050 -8.93307 -8.68611 -8.42172 -7.17853 -6.31166 -3.24013 0.61300 1.28716 1.67696 1.79231 2.83401 3.16060 3.38589 3.49098 3.66515 3.81888 4.40971 4.48135 4.55207 4.60781 4.76858 4.84808 4.89773 4.95254 5.04845 5.19024 5.28600 5.31430 5.40740 5.41953 5.50381 5.52656 5.66799 5.71122 5.77587 5.83611 5.99109 6.03497 6.04119 6.07469 6.12380 6.26373 6.33730 6.42790 7.03378 7.25505 7.51436 8.05118 8.22702 8.96408 9.48470 10.31371 11.21058 Molecular weight = 322.11amu Principal moments of inertia in cm(-1) A = 0.016130 B = 0.004337 C = 0.003828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1735.503111 B = 6455.263585 C = 7311.991149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.140 4.140 3 S 0.174 5.826 4 C -0.232 4.232 5 C -0.120 4.120 6 C -0.173 4.173 7 C 0.588 3.412 8 O -0.543 6.543 9 N -0.603 5.603 10 C 0.079 3.921 11 C 0.047 3.953 12 O -0.335 6.335 13 C 0.058 3.942 14 C 0.106 3.894 15 N -0.616 5.616 16 C -0.301 4.301 17 H 0.082 0.918 18 C -0.021 4.021 19 N -0.935 5.935 20 Si 1.070 2.930 21 H -0.296 1.296 22 H -0.287 1.287 23 H -0.290 1.290 24 C 0.117 3.883 25 C 0.073 3.927 26 H 0.077 0.923 27 H 0.068 0.932 28 H 0.107 0.893 29 H 0.171 0.829 30 H 0.164 0.836 31 H 0.076 0.924 32 H 0.101 0.899 33 H 0.106 0.894 34 H 0.056 0.944 35 H 0.048 0.952 36 H 0.044 0.956 37 H 0.260 0.740 38 H 0.059 0.941 39 H 0.061 0.939 40 H 0.119 0.881 41 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.411 10.034 -19.409 23.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.260 4.260 3 S 0.440 5.560 4 C -0.366 4.366 5 C -0.148 4.148 6 C -0.190 4.190 7 C 0.376 3.624 8 O -0.422 6.422 9 N -0.336 5.336 10 C -0.043 4.043 11 C -0.031 4.031 12 O -0.253 6.253 13 C 0.015 3.985 14 C -0.021 4.021 15 N -0.344 5.344 16 C -0.427 4.427 17 H 0.099 0.901 18 C -0.220 4.220 19 N -0.577 5.577 20 Si 0.903 3.097 21 H -0.223 1.223 22 H -0.214 1.214 23 H -0.218 1.218 24 C -0.009 4.009 25 C -0.051 4.051 26 H 0.096 0.904 27 H 0.087 0.913 28 H 0.125 0.875 29 H 0.188 0.812 30 H 0.181 0.819 31 H 0.095 0.905 32 H 0.119 0.881 33 H 0.124 0.876 34 H 0.074 0.926 35 H 0.066 0.934 36 H 0.062 0.938 37 H 0.070 0.930 38 H 0.077 0.923 39 H 0.079 0.921 40 H 0.136 0.864 41 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -6.688 10.476 -19.484 23.111 hybrid contribution -1.177 -0.487 0.300 1.309 sum -7.865 9.989 -19.184 23.014 Atomic orbital electron populations 1.20689 0.86903 1.04851 1.03566 1.24484 1.01736 0.96798 1.02973 1.83051 0.95236 1.07481 1.70257 1.25472 1.02379 0.97114 1.11663 1.21707 0.94965 0.96717 1.01440 1.20024 0.92887 0.93489 1.12570 1.17557 0.84425 0.83530 0.76853 1.90686 1.18277 1.84399 1.48848 1.47971 1.18309 1.06630 1.60650 1.22310 1.02119 0.81261 0.98656 1.22938 0.85337 1.01624 0.93182 1.87987 1.28161 1.23222 1.85905 1.23144 0.99579 0.83859 0.91884 1.22794 0.93701 0.96225 0.89362 1.45824 1.09409 1.76398 1.02724 1.20129 1.05057 1.38082 0.79434 0.90068 1.25718 0.97846 0.97856 1.00539 1.70915 1.40020 1.47618 0.99146 0.83737 0.75831 0.76383 0.73789 1.22320 1.21442 1.21759 1.22750 0.92357 0.99776 0.85977 1.23112 0.83859 1.03136 0.94968 0.90402 0.91300 0.87457 0.81179 0.81900 0.90546 0.88077 0.87638 0.92555 0.93387 0.93811 0.92954 0.92326 0.92103 0.86357 0.90192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.06 9.90 36.01 0.36 -0.70 16 2 C -0.14 -1.59 6.33 -35.11 -0.22 -1.82 16 3 S 0.17 1.57 22.97 -107.50 -2.47 -0.90 16 4 C -0.23 -2.11 11.12 28.86 0.32 -1.79 16 5 C -0.12 -1.27 8.01 -39.02 -0.31 -1.58 16 6 C -0.17 -2.18 5.64 -104.63 -0.59 -2.78 16 7 C 0.59 8.44 7.54 -12.63 -0.10 8.34 16 8 O -0.54 -8.76 13.80 5.24 0.07 -8.68 16 9 N -0.60 -8.21 3.03 -173.83 -0.53 -8.73 16 10 C 0.08 0.99 6.60 -3.58 -0.02 0.97 16 11 C 0.05 0.66 6.90 37.27 0.26 0.92 16 12 O -0.34 -6.21 10.55 -35.23 -0.37 -6.58 16 13 C 0.06 1.02 1.29 -90.66 -0.12 0.90 16 14 C 0.11 2.14 7.90 -8.18 -0.06 2.07 16 15 N -0.62 -15.29 3.68 -184.54 -0.68 -15.96 16 16 C -0.30 -8.79 11.09 -15.06 -0.17 -8.96 16 17 H 0.08 2.51 8.05 -52.49 -0.42 2.08 16 18 C -0.02 -0.63 5.50 -17.43 -0.10 -0.73 16 19 N -0.93 -29.73 13.70 55.49 0.76 -28.96 16 20 Si 1.07 26.90 24.98 -169.99 -4.25 22.65 16 21 H -0.30 -7.54 7.11 56.52 0.40 -7.14 16 22 H -0.29 -7.01 6.77 56.52 0.38 -6.63 16 23 H -0.29 -6.58 6.39 56.52 0.36 -6.21 16 24 C 0.12 2.43 5.41 -8.03 -0.04 2.39 16 25 C 0.07 0.97 4.21 -3.68 -0.02 0.96 16 26 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 27 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 28 H 0.11 1.31 5.72 -51.93 -0.30 1.01 16 29 H 0.17 1.14 8.06 -52.49 -0.42 0.71 16 30 H 0.16 1.52 5.34 -52.49 -0.28 1.24 16 31 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.10 1.24 7.06 -51.93 -0.37 0.87 16 33 H 0.11 1.24 8.14 -51.93 -0.42 0.82 16 34 H 0.06 0.85 7.30 -51.93 -0.38 0.47 16 35 H 0.05 1.00 7.36 -51.92 -0.38 0.62 16 36 H 0.04 0.83 7.93 -51.93 -0.41 0.42 16 37 H 0.26 8.18 8.73 -40.82 -0.36 7.83 16 38 H 0.06 1.09 8.08 -51.93 -0.42 0.67 16 39 H 0.06 1.35 3.93 -51.93 -0.20 1.14 16 40 H 0.12 1.47 3.78 -51.93 -0.20 1.27 16 41 H 0.08 0.92 8.02 -51.93 -0.42 0.51 16 LS Contribution 332.34 15.07 5.01 5.01 Total: -1.00 -34.99 332.34 -8.37 -43.36 By element: Atomic # 1 Polarization: 5.70 SS G_CDS: -5.10 Total: 0.60 kcal Atomic # 6 Polarization: -0.98 SS G_CDS: -0.81 Total: -1.79 kcal Atomic # 7 Polarization: -53.22 SS G_CDS: -0.44 Total: -53.66 kcal Atomic # 8 Polarization: -14.96 SS G_CDS: -0.30 Total: -15.26 kcal Atomic # 14 Polarization: 26.90 SS G_CDS: -4.25 Total: 22.65 kcal Atomic # 16 Polarization: 1.57 SS G_CDS: -2.47 Total: -0.90 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -34.99 -8.37 -43.36 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053245608.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.496 kcal (2) G-P(sol) polarization free energy of solvation -34.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.356 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds