Wall clock time and date at job start Tue Mar 31 2020 12:50:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.32770 * 124.71187 * 2 1 4 4 C 1.44426 * 113.08184 * 179.97438 * 3 2 1 5 5 C 1.47192 * 123.45951 * 179.97438 * 4 3 2 6 6 O 1.21628 * 120.00149 * 344.57149 * 5 4 3 7 7 N 1.34781 * 119.99953 * 164.56787 * 5 4 3 8 8 C 1.44964 * 117.33780 * 358.24040 * 7 5 4 9 9 C 1.51960 * 111.93997 * 203.78054 * 8 7 5 10 10 O 1.41319 * 111.60224 * 319.69421 * 9 8 7 11 11 C 1.40851 * 118.31312 * 56.89845 * 10 9 8 12 12 H 1.09005 * 108.89623 * 188.22423 * 11 10 9 13 13 C 1.53907 * 110.31096 * 68.00018 * 11 10 9 14 14 N 1.46780 * 107.62830 * 221.41164 * 13 11 10 15 15 C 1.36935 * 125.36228 * 178.81090 * 14 13 11 16 16 H 1.07999 * 120.00175 * 174.89734 * 15 14 13 17 17 C 1.38817 * 119.99765 * 354.89454 * 15 14 13 18 18 N 1.31620 * 120.00525 * 7.83585 * 17 15 14 19 19 Si 1.86806 * 119.99747 * 187.84389 * 17 15 14 20 20 H 1.48497 * 109.47235 * 94.98078 * 19 17 15 21 21 H 1.48505 * 109.46778 * 214.98380 * 19 17 15 22 22 H 1.48496 * 109.46941 * 334.97728 * 19 17 15 23 23 C 1.46866 * 109.27338 * 358.81003 * 14 13 11 24 24 C 1.44537 * 117.33953 * 178.25731 * 7 5 4 25 25 H 1.09002 * 109.30304 * 286.16293 * 24 7 5 26 26 C 1.36010 * 113.07843 * 0.24405 * 4 3 2 27 27 S 1.70447 * 110.81511 * 359.62400 * 26 4 3 28 28 H 1.09005 * 109.46492 * 90.00033 * 1 2 3 29 29 H 1.08992 * 109.47626 * 210.00506 * 1 2 3 30 30 H 1.09003 * 109.46895 * 330.00692 * 1 2 3 31 31 H 1.08001 * 123.45919 * 359.97438 * 3 2 1 32 32 H 1.09000 * 108.98779 * 324.41450 * 8 7 5 33 33 H 1.09000 * 108.99034 * 83.14588 * 8 7 5 34 34 H 1.08997 * 109.05155 * 80.24304 * 9 8 7 35 35 H 1.08998 * 109.05013 * 199.14934 * 9 8 7 36 36 H 1.08992 * 109.82389 * 340.93868 * 13 11 10 37 37 H 1.09003 * 109.82276 * 101.89107 * 13 11 10 38 38 H 0.96997 * 120.00240 * 180.02562 * 18 17 15 39 39 H 1.09001 * 110.06496 * 137.03570 * 23 14 13 40 40 H 1.09003 * 110.06734 * 258.49691 * 23 14 13 41 41 H 1.07996 * 124.59171 * 179.73603 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2631 1.0914 0.0000 4 6 3.6777 0.8003 0.0006 5 6 4.7201 1.8394 0.0002 6 8 4.4341 2.9877 -0.2809 7 7 5.9917 1.5186 0.3113 8 6 6.2608 0.1414 0.6751 9 6 7.5101 0.0139 1.5307 10 8 8.5400 0.8693 1.0783 11 6 8.2727 2.2496 0.9929 12 1 9.1086 2.7409 0.4948 13 6 8.0895 2.8463 2.3997 14 7 6.9635 3.7861 2.3408 15 6 6.4736 4.5034 3.3994 16 1 5.6933 5.2333 3.2422 17 6 6.9801 4.2923 4.6745 18 7 8.0318 3.5197 4.8454 19 14 6.1686 5.1047 6.1480 20 1 5.1987 4.1620 6.7612 21 1 7.2060 5.4671 7.1469 22 1 5.4562 6.3308 5.7072 23 6 6.4451 3.8359 0.9676 24 6 6.9757 2.5757 0.2555 25 1 7.1953 2.8089 -0.7864 26 6 3.9476 -0.5328 -0.0043 27 16 2.5064 -1.4427 0.0008 28 1 -0.3632 0.0000 -1.0278 29 1 -0.3634 -0.8898 0.5139 30 1 -0.3633 0.8901 0.5137 31 1 1.8615 2.0940 -0.0004 32 1 5.4091 -0.2517 1.2304 33 1 6.3916 -0.4464 -0.2334 34 1 7.2631 0.2684 2.5614 35 1 7.8623 -1.0170 1.4947 36 1 7.8707 2.0515 3.1127 37 1 8.9956 3.3734 2.6986 38 1 8.3854 3.3719 5.7365 39 1 5.3551 3.8281 0.9788 40 1 6.8071 4.7319 0.4633 41 1 4.9407 -0.9572 -0.0088 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001083224399.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:50:03 Heat of formation + Delta-G solvation = 9.645442 kcal Electronic energy + Delta-G solvation = -26148.808510 eV Core-core repulsion = 22543.344862 eV Total energy + Delta-G solvation = -3605.463648 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 322.114 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.38473 -40.04158 -38.34833 -37.48854 -36.38228 -34.50376 -32.95089 -31.71463 -29.71752 -29.24932 -27.76587 -26.80661 -25.30156 -24.70501 -22.78943 -21.62734 -20.49886 -20.37114 -19.05311 -18.40462 -18.06692 -17.91313 -16.98644 -16.83797 -16.42547 -16.14312 -15.81777 -15.71118 -15.41926 -14.85646 -14.73122 -14.28904 -14.19602 -14.06453 -13.84189 -13.55859 -13.31293 -13.14246 -13.05791 -12.96308 -12.81918 -12.49819 -12.35706 -12.19757 -12.14478 -11.94528 -11.84562 -11.63265 -10.93425 -10.76036 -10.36226 -9.76567 -9.62582 -9.31230 -8.91735 -7.92414 -5.26799 -0.23810 0.58889 0.90148 0.94713 1.39870 1.41435 1.51255 1.73472 2.23045 2.43144 2.73839 3.25040 3.31244 3.57303 3.65049 3.74907 3.77192 3.86999 4.05404 4.06287 4.19927 4.33377 4.34308 4.39152 4.49558 4.51615 4.63714 4.75822 4.79128 4.84819 4.94784 5.00976 5.07699 5.18360 5.35229 5.36947 5.44241 5.57908 5.60780 6.13013 6.17186 6.37110 7.02785 7.07442 7.70146 8.32638 9.17498 Molecular weight = 322.11amu Principal moments of inertia in cm(-1) A = 0.013279 B = 0.004614 C = 0.003978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2108.014292 B = 6067.614367 C = 7037.044988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.203 4.203 3 C -0.121 4.121 4 C -0.178 4.178 5 C 0.560 3.440 6 O -0.567 6.567 7 N -0.582 5.582 8 C 0.057 3.943 9 C 0.048 3.952 10 O -0.369 6.369 11 C 0.086 3.914 12 H 0.131 0.869 13 C 0.162 3.838 14 N -0.619 5.619 15 C -0.246 4.246 16 H 0.071 0.929 17 C -0.056 4.056 18 N -0.945 5.945 19 Si 0.975 3.025 20 H -0.286 1.286 21 H -0.288 1.288 22 H -0.272 1.272 23 C 0.107 3.893 24 C 0.122 3.878 25 H 0.094 0.906 26 C -0.233 4.233 27 S 0.245 5.755 28 H 0.089 0.911 29 H 0.087 0.913 30 H 0.076 0.924 31 H 0.133 0.867 32 H 0.111 0.889 33 H 0.112 0.888 34 H 0.028 0.972 35 H 0.153 0.847 36 H 0.027 0.973 37 H 0.015 0.985 38 H 0.249 0.751 39 H 0.068 0.932 40 H 0.022 0.978 41 H 0.218 0.782 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.023 -16.708 -12.174 22.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.320 4.320 3 C -0.149 4.149 4 C -0.196 4.196 5 C 0.350 3.650 6 O -0.448 6.448 7 N -0.313 5.313 8 C -0.065 4.065 9 C -0.028 4.028 10 O -0.286 6.286 11 C 0.027 3.973 12 H 0.148 0.852 13 C 0.037 3.963 14 N -0.346 5.346 15 C -0.375 4.375 16 H 0.089 0.911 17 C -0.250 4.250 18 N -0.593 5.593 19 Si 0.803 3.197 20 H -0.213 1.213 21 H -0.214 1.214 22 H -0.197 1.197 23 C -0.018 4.018 24 C 0.017 3.983 25 H 0.111 0.889 26 C -0.370 4.370 27 S 0.511 5.489 28 H 0.107 0.893 29 H 0.106 0.894 30 H 0.095 0.905 31 H 0.151 0.849 32 H 0.129 0.871 33 H 0.130 0.870 34 H 0.046 0.954 35 H 0.171 0.829 36 H 0.045 0.955 37 H 0.033 0.967 38 H 0.059 0.941 39 H 0.086 0.914 40 H 0.039 0.961 41 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges -10.207 -17.727 -12.154 23.794 hybrid contribution 0.156 2.873 1.247 3.136 sum -10.051 -14.854 -10.907 20.991 Atomic orbital electron populations 1.20471 0.85494 1.04209 1.03994 1.24752 1.02047 0.96188 1.09034 1.20985 0.90548 1.00046 1.03321 1.20093 0.93831 0.93032 1.12628 1.18297 0.82216 0.87781 0.76701 1.90654 1.82049 1.21786 1.50357 1.46579 1.07670 1.10088 1.67009 1.22865 1.00451 0.81859 1.01307 1.22635 0.87514 0.96529 0.96142 1.86889 1.39252 1.15991 1.86511 1.22721 0.96301 0.82522 0.95784 0.85190 1.21447 0.89836 0.92135 0.92897 1.44474 1.35752 1.49540 1.04876 1.19332 1.16117 1.15531 0.86539 0.91117 1.25591 0.98660 1.01002 0.99740 1.70171 1.24546 1.43348 1.21228 0.85110 0.77483 0.77975 0.79103 1.21302 1.21374 1.19708 1.22133 1.00353 0.94503 0.84809 1.21505 0.89433 0.87490 0.99887 0.88864 1.27225 1.07851 0.97040 1.04919 1.82680 0.91739 1.06334 1.68100 0.89261 0.89374 0.90528 0.84921 0.87126 0.87015 0.95360 0.82915 0.95521 0.96709 0.94147 0.91393 0.96050 0.76559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.10 10.35 71.24 0.74 -0.36 16 2 C -0.20 -4.01 6.44 24.51 0.16 -3.85 16 3 C -0.12 -3.30 9.99 22.67 0.23 -3.07 16 4 C -0.18 -5.16 5.72 -19.87 -0.11 -5.27 16 5 C 0.56 20.71 7.09 86.59 0.61 21.33 16 6 O -0.57 -25.21 13.77 -4.12 -0.06 -25.27 16 7 N -0.58 -19.98 3.09 -810.57 -2.50 -22.49 16 8 C 0.06 1.40 4.52 86.32 0.39 1.79 16 9 C 0.05 1.34 6.72 71.64 0.48 1.82 16 10 O -0.37 -12.56 10.24 -146.17 -1.50 -14.06 16 11 C 0.09 3.35 3.83 30.81 0.12 3.47 16 12 H 0.13 4.54 8.14 -2.38 -0.02 4.52 16 13 C 0.16 8.34 5.03 86.63 0.44 8.77 16 14 N -0.62 -34.39 3.39 -696.32 -2.36 -36.75 16 15 C -0.25 -14.88 10.24 84.03 0.86 -14.02 16 16 H 0.07 4.24 7.84 -2.91 -0.02 4.22 16 17 C -0.06 -3.34 5.47 84.86 0.46 -2.88 16 18 N -0.94 -57.91 10.32 21.65 0.22 -57.69 16 19 Si 0.98 47.67 29.56 68.60 2.03 49.70 16 20 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 21 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16 22 H -0.27 -12.83 7.11 99.48 0.71 -12.12 16 23 C 0.11 5.17 6.29 86.70 0.55 5.72 16 24 C 0.12 4.71 3.40 45.66 0.16 4.86 16 25 H 0.09 3.24 8.14 -2.39 -0.02 3.22 16 26 C -0.23 -4.65 8.51 67.30 0.57 -4.08 16 27 S 0.25 3.69 23.00 -56.49 -1.30 2.39 16 28 H 0.09 0.95 8.14 -2.38 -0.02 0.93 16 29 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 30 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 31 H 0.13 3.96 8.06 -2.91 -0.02 3.93 16 32 H 0.11 2.48 5.05 -2.39 -0.01 2.47 16 33 H 0.11 1.86 6.91 -2.39 -0.02 1.84 16 34 H 0.03 0.99 6.81 -2.39 -0.02 0.97 16 35 H 0.15 2.69 8.14 -2.39 -0.02 2.68 16 36 H 0.03 1.51 5.68 -2.39 -0.01 1.50 16 37 H 0.01 0.85 7.57 -2.39 -0.02 0.83 16 38 H 0.25 14.75 8.31 -92.71 -0.77 13.98 16 39 H 0.07 3.59 4.83 -7.48 -0.04 3.55 16 40 H 0.02 1.04 8.14 -2.39 -0.02 1.02 16 41 H 0.22 3.14 3.93 -2.91 -0.01 3.13 16 Total: -1.00 -78.76 330.27 1.23 -77.53 By element: Atomic # 1 Polarization: 11.36 SS G_CDS: 1.04 Total: 12.40 kcal Atomic # 6 Polarization: 8.58 SS G_CDS: 5.65 Total: 14.23 kcal Atomic # 7 Polarization: -112.29 SS G_CDS: -4.64 Total: -116.92 kcal Atomic # 8 Polarization: -37.77 SS G_CDS: -1.55 Total: -39.33 kcal Atomic # 14 Polarization: 47.67 SS G_CDS: 2.03 Total: 49.70 kcal Atomic # 16 Polarization: 3.69 SS G_CDS: -1.30 Total: 2.39 kcal Total: -78.76 1.23 -77.53 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083224399.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.175 kcal (2) G-P(sol) polarization free energy of solvation -78.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.530 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds