Wall clock time and date at job start Tue Mar 31 2020 12:47:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.33381 * 125.20010 * 2 1 4 4 C 1.38434 * 114.91845 * 180.02562 * 3 2 1 5 5 C 1.33385 * 114.91828 * 0.02562 * 4 3 2 6 6 C 1.50702 * 125.20226 * 179.97438 * 5 4 3 7 7 N 1.46505 * 109.46910 * 90.00198 * 6 5 4 8 8 C 1.34768 * 120.00082 * 179.97438 * 7 6 5 9 9 O 1.21345 * 120.00101 * 0.02562 * 8 7 6 10 10 C 1.49453 * 120.00060 * 179.97438 * 8 7 6 11 11 O 1.21347 * 119.99738 * 5.09600 * 10 8 7 12 12 N 1.34782 * 120.00141 * 185.08842 * 10 8 7 13 13 C 1.46497 * 119.99894 * 185.03768 * 12 10 8 14 14 C 1.53005 * 109.46780 * 184.77988 * 13 12 10 15 15 C 1.50694 * 115.55017 * 294.81935 * 14 13 12 16 16 H 1.08003 * 119.99667 * 95.20821 * 15 14 13 17 17 C 1.37878 * 120.00569 * 274.92361 * 15 14 13 18 18 N 1.31513 * 119.99163 * 355.42361 * 17 15 14 19 19 Si 1.86794 * 120.00501 * 175.42139 * 17 15 14 20 20 H 1.48506 * 109.47138 * 59.99993 * 19 17 15 21 21 H 1.48497 * 109.47408 * 180.02562 * 19 17 15 22 22 H 1.48504 * 109.47174 * 300.00591 * 19 17 15 23 23 C 1.53002 * 117.49623 * 80.49302 * 14 13 12 24 24 C 1.53002 * 117.49534 * 149.14978 * 14 13 12 25 25 S 1.75882 * 109.59701 * 0.24435 * 5 4 3 26 26 H 1.08995 * 109.47242 * 89.99421 * 1 2 3 27 27 H 1.08999 * 109.47001 * 210.00042 * 1 2 3 28 28 H 1.09000 * 109.46672 * 329.99486 * 1 2 3 29 29 H 1.07996 * 122.54822 * 0.02562 * 3 2 1 30 30 H 1.07993 * 122.54155 * 180.02562 * 4 3 2 31 31 H 1.08996 * 109.47368 * 330.00644 * 6 5 4 32 32 H 1.08999 * 109.47544 * 209.99825 * 6 5 4 33 33 H 0.97003 * 120.00007 * 0.02562 * 7 6 5 34 34 H 0.97004 * 119.99403 * 5.04265 * 12 10 8 35 35 H 1.09003 * 109.46616 * 64.78885 * 13 12 10 36 36 H 1.08993 * 109.47729 * 304.78355 * 13 12 10 37 37 H 0.97009 * 119.99393 * 184.99658 * 18 17 15 38 38 H 1.08995 * 117.49715 * 214.99983 * 23 14 13 39 39 H 1.09003 * 117.49834 * 0.02562 * 23 14 13 40 40 H 1.09005 * 117.49794 * 359.97438 * 24 14 13 41 41 H 1.08999 * 117.49412 * 144.97246 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2759 1.0899 0.0000 4 6 3.6380 0.8428 -0.0006 5 6 3.9751 -0.4477 -0.0016 6 6 5.3860 -0.9771 -0.0029 7 7 5.8442 -1.1495 1.3780 8 6 7.0847 -1.6156 1.6231 9 8 7.8224 -1.8920 0.7002 10 6 7.5523 -1.7909 3.0318 11 8 6.7857 -1.6023 3.9534 12 7 8.8253 -2.1586 3.2785 13 6 9.2542 -2.4377 4.6512 14 6 10.7589 -2.7141 4.6691 15 6 11.2006 -3.9544 3.9359 16 1 11.5403 -3.8848 2.9130 17 6 11.1768 -5.1771 4.5726 18 7 10.8549 -5.2491 5.8457 19 14 11.6015 -6.7311 3.6272 20 1 12.9864 -6.6275 3.1011 21 1 11.5017 -7.9041 4.5322 22 1 10.6536 -6.8970 2.4961 23 6 11.6992 -1.5073 4.6464 24 6 11.5337 -2.3251 5.9298 25 16 2.5210 -1.4372 -0.0089 26 1 -0.3633 0.0001 -1.0276 27 1 -0.3633 -0.8900 0.5138 28 1 -0.3633 0.8900 0.5139 29 1 1.8670 2.0895 0.0004 30 1 4.3721 1.6349 -0.0002 31 1 6.0385 -0.2712 -0.5166 32 1 5.4133 -1.9377 -0.5172 33 1 5.2544 -0.9289 2.1158 34 1 9.4575 -2.2383 2.5471 35 1 8.7201 -3.3098 5.0284 36 1 9.0354 -1.5765 5.2825 37 1 10.9082 -6.0981 6.3121 38 1 12.6373 -1.6105 4.1011 39 1 11.2458 -0.5165 4.6191 40 1 10.9714 -1.8718 6.7462 41 1 12.3626 -2.9664 6.2290 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001117005676.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:47:05 Heat of formation + Delta-G solvation = -37.908210 kcal Electronic energy + Delta-G solvation = -23594.282393 eV Core-core repulsion = 19986.756664 eV Total energy + Delta-G solvation = -3607.525729 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 322.114 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.68542 -39.82658 -38.99131 -38.46832 -36.40068 -34.97868 -33.96437 -32.99016 -29.89278 -28.61533 -27.40214 -25.88246 -24.29703 -23.48424 -22.89837 -21.46439 -21.27497 -20.12536 -19.42389 -18.17845 -17.88935 -17.80443 -17.04397 -16.66940 -16.59765 -16.34821 -15.91177 -15.65749 -15.27655 -14.92497 -14.74027 -14.42925 -14.30089 -14.07329 -13.67608 -13.59681 -13.49172 -13.04602 -12.95695 -12.89237 -12.82258 -12.76540 -12.44348 -12.39674 -12.01347 -11.66715 -11.43647 -10.97327 -10.83501 -10.45941 -10.41993 -10.13854 -9.96927 -9.53319 -9.46049 -8.10882 -6.24497 -0.13449 0.34258 0.57814 1.00519 1.34274 1.41876 1.44566 1.50217 1.81682 2.13994 2.41528 2.74665 3.16618 3.41098 3.53810 3.59890 3.95657 4.14388 4.19717 4.38447 4.48749 4.51428 4.62474 4.65889 4.68642 4.74180 4.77990 4.91438 5.01350 5.02468 5.09466 5.21082 5.27118 5.28554 5.33788 5.52640 5.56551 5.68429 5.76926 5.94031 6.35422 6.41644 6.71978 6.82445 6.97469 7.45109 8.95525 Molecular weight = 322.11amu Principal moments of inertia in cm(-1) A = 0.020879 B = 0.002418 C = 0.002314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1340.724654 B =11579.189019 C =12095.377758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C -0.168 4.168 3 C -0.156 4.156 4 C -0.100 4.100 5 C -0.226 4.226 6 C 0.195 3.805 7 N -0.687 5.687 8 C 0.517 3.483 9 O -0.537 6.537 10 C 0.497 3.503 11 O -0.556 6.556 12 N -0.668 5.668 13 C 0.174 3.826 14 C -0.004 4.004 15 C -0.508 4.508 16 H 0.058 0.942 17 C 0.028 3.972 18 N -0.903 5.903 19 Si 0.946 3.054 20 H -0.270 1.270 21 H -0.287 1.287 22 H -0.276 1.276 23 C -0.180 4.180 24 C -0.146 4.146 25 S 0.091 5.909 26 H 0.087 0.913 27 H 0.071 0.929 28 H 0.093 0.907 29 H 0.163 0.837 30 H 0.157 0.843 31 H 0.102 0.898 32 H 0.079 0.921 33 H 0.418 0.582 34 H 0.415 0.585 35 H 0.040 0.960 36 H 0.056 0.944 37 H 0.260 0.740 38 H 0.082 0.918 39 H 0.090 0.910 40 H 0.075 0.925 41 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.941 13.051 -12.490 26.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.286 4.286 3 C -0.185 4.185 4 C -0.132 4.132 5 C -0.343 4.343 6 C 0.071 3.929 7 N -0.340 5.340 8 C 0.297 3.703 9 O -0.414 6.414 10 C 0.277 3.723 11 O -0.436 6.436 12 N -0.318 5.318 13 C 0.051 3.949 14 C -0.004 4.004 15 C -0.546 4.546 16 H 0.076 0.924 17 C -0.173 4.173 18 N -0.541 5.541 19 Si 0.772 3.228 20 H -0.195 1.195 21 H -0.213 1.213 22 H -0.202 1.202 23 C -0.217 4.217 24 C -0.184 4.184 25 S 0.356 5.644 26 H 0.106 0.894 27 H 0.090 0.910 28 H 0.111 0.889 29 H 0.180 0.820 30 H 0.174 0.826 31 H 0.119 0.881 32 H 0.097 0.903 33 H 0.255 0.745 34 H 0.252 0.748 35 H 0.058 0.942 36 H 0.074 0.926 37 H 0.069 0.931 38 H 0.101 0.899 39 H 0.109 0.891 40 H 0.094 0.906 41 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -19.311 11.245 -12.378 25.546 hybrid contribution 0.773 0.257 -0.019 0.814 sum -18.538 11.502 -12.398 25.093 Atomic orbital electron populations 1.20491 0.85937 1.04209 1.03857 1.25011 1.01339 0.95128 1.07141 1.20359 0.92447 1.00437 1.05258 1.20460 0.97279 0.95730 0.99708 1.24217 0.97451 0.97307 1.15346 1.19779 0.89224 1.02037 0.81860 1.45863 1.13960 1.63932 1.10294 1.19982 0.83073 0.78420 0.88799 1.90761 1.55237 1.49734 1.45710 1.20304 0.83308 0.79083 0.89604 1.90704 1.54760 1.51810 1.46312 1.45797 1.10269 1.64079 1.11650 1.20840 0.95659 0.97928 0.80460 1.19071 0.87950 0.93732 0.99677 1.20626 1.44294 0.90954 0.98715 0.92369 1.25639 0.94667 1.01423 0.95617 1.70082 1.47936 1.26379 1.09657 0.85809 0.78875 0.79525 0.78608 1.19521 1.21294 1.20157 1.23024 1.01792 0.95082 1.01835 1.22399 1.02911 1.02086 0.90991 1.84548 0.96650 1.10150 1.73058 0.89430 0.90965 0.88875 0.81991 0.82573 0.88053 0.90277 0.74506 0.74799 0.94182 0.92573 0.93062 0.89902 0.89139 0.90631 0.91595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.73 10.38 71.24 0.74 0.01 16 2 C -0.17 -2.33 6.51 24.59 0.16 -2.17 16 3 C -0.16 -2.05 10.05 21.22 0.21 -1.84 16 4 C -0.10 -1.48 10.05 21.22 0.21 -1.27 16 5 C -0.23 -3.98 5.88 24.59 0.14 -3.84 16 6 C 0.19 3.93 6.16 85.63 0.53 4.45 16 7 N -0.69 -17.04 5.54 -468.14 -2.59 -19.63 16 8 C 0.52 16.55 7.89 87.27 0.69 17.23 16 9 O -0.54 -19.21 16.50 -3.23 -0.05 -19.27 16 10 C 0.50 18.50 7.88 87.27 0.69 19.19 16 11 O -0.56 -22.48 16.47 -3.24 -0.05 -22.53 16 12 N -0.67 -26.65 5.46 -464.41 -2.54 -29.18 16 13 C 0.17 7.78 5.53 86.38 0.48 8.26 16 14 C 0.00 -0.17 1.47 -52.93 -0.08 -0.24 16 15 C -0.51 -26.42 8.59 25.60 0.22 -26.20 16 16 H 0.06 2.99 7.82 -2.91 -0.02 2.97 16 17 C 0.03 1.48 5.43 84.66 0.46 1.94 16 18 N -0.90 -50.53 12.65 21.45 0.27 -50.26 16 19 Si 0.95 43.02 29.54 68.60 2.03 45.04 16 20 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 21 H -0.29 -12.97 7.11 99.48 0.71 -12.26 16 22 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 23 C -0.18 -7.21 9.96 30.62 0.30 -6.91 16 24 C -0.15 -6.55 9.14 30.62 0.28 -6.27 16 25 S 0.09 1.57 23.31 -56.49 -1.32 0.25 16 26 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16 27 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 28 H 0.09 0.53 8.14 -2.39 -0.02 0.51 16 29 H 0.16 1.38 8.06 -2.91 -0.02 1.36 16 30 H 0.16 1.83 8.06 -2.91 -0.02 1.81 16 31 H 0.10 1.87 8.14 -2.39 -0.02 1.85 16 32 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 33 H 0.42 9.88 7.95 -92.71 -0.74 9.15 16 34 H 0.42 16.32 7.84 -92.71 -0.73 15.59 16 35 H 0.04 2.04 8.14 -2.39 -0.02 2.02 16 36 H 0.06 2.38 8.05 -2.39 -0.02 2.36 16 37 H 0.26 14.07 8.32 -92.70 -0.77 13.30 16 38 H 0.08 3.27 8.14 -2.39 -0.02 3.25 16 39 H 0.09 3.18 8.14 -2.39 -0.02 3.16 16 40 H 0.08 3.18 8.14 -2.38 -0.02 3.16 16 41 H 0.07 3.24 8.14 -2.39 -0.02 3.22 16 Total: -1.00 -62.41 373.22 0.39 -62.02 By element: Atomic # 1 Polarization: 31.59 SS G_CDS: -0.40 Total: 31.20 kcal Atomic # 6 Polarization: -2.69 SS G_CDS: 5.04 Total: 2.35 kcal Atomic # 7 Polarization: -94.21 SS G_CDS: -4.86 Total: -99.07 kcal Atomic # 8 Polarization: -41.69 SS G_CDS: -0.11 Total: -41.80 kcal Atomic # 14 Polarization: 43.02 SS G_CDS: 2.03 Total: 45.04 kcal Atomic # 16 Polarization: 1.57 SS G_CDS: -1.32 Total: 0.25 kcal Total: -62.41 0.39 -62.02 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117005676.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.117 kcal (2) G-P(sol) polarization free energy of solvation -62.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.025 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds