Wall clock time and date at job start Tue Mar 31 2020 13:19:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.31769 * 119.04781 * 2 1 4 4 C 1.33058 * 120.83841 * 180.29185 * 3 2 1 5 5 N 1.38801 * 120.49432 * 179.71588 * 4 3 2 6 6 C 1.38442 * 119.99763 * 185.68705 * 5 4 3 7 7 C 1.38937 * 120.00083 * 59.47487 * 6 5 4 8 8 H 1.08005 * 120.00087 * 206.12311 * 7 6 5 9 9 C 1.40859 * 120.00166 * 26.11759 * 7 6 5 10 10 N 1.30321 * 120.00031 * 6.88176 * 9 7 6 11 11 Si 1.86803 * 120.00146 * 186.87691 * 9 7 6 12 12 H 1.48508 * 109.46929 * 59.99993 * 11 9 7 13 13 H 1.48496 * 109.47239 * 180.02562 * 11 9 7 14 14 H 1.48501 * 109.47221 * 300.00689 * 11 9 7 15 15 C 1.41129 * 119.99661 * 239.47366 * 6 5 4 16 16 C 1.43206 * 119.99702 * 185.27539 * 15 6 5 17 17 N 8.05549 * 155.61093 * 9.60302 * 2 1 3 18 18 C 1.43195 * 120.00267 * 5.26996 * 15 6 5 19 19 N 6.14977 * 126.92766 * 38.21664 * 2 1 3 20 20 C 1.39343 * 119.00636 * 359.43983 * 4 3 2 21 21 C 1.38904 * 118.27495 * 0.27589 * 20 4 3 22 22 N 1.39661 * 120.47173 * 180.02562 * 21 20 4 23 23 C 1.34850 * 126.84818 * 184.77701 * 22 21 20 24 24 N 1.30796 * 108.01130 * 179.86942 * 23 22 21 25 25 C 1.33314 * 109.84555 * 0.40903 * 24 23 22 26 26 N 1.30692 * 109.02944 * 359.74258 * 25 24 23 27 27 N 1.31722 * 119.04880 * 179.72180 * 2 1 3 28 28 H 1.09003 * 109.47135 * 270.27692 * 1 2 3 29 29 H 1.08995 * 109.47283 * 30.27281 * 1 2 3 30 30 H 1.09005 * 109.47287 * 150.27996 * 1 2 3 31 31 H 0.96993 * 119.99934 * 5.40672 * 5 4 3 32 32 H 0.97000 * 119.99733 * 184.99226 * 10 9 7 33 33 H 1.08000 * 120.85850 * 180.25192 * 20 4 3 34 34 H 1.08004 * 125.99802 * 359.97438 * 23 22 21 35 35 H 1.08001 * 125.48449 * 179.77021 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1467 1.1519 0.0000 4 6 3.4767 1.1935 -0.0058 5 7 4.1433 2.4110 -0.0117 6 6 5.5216 2.4448 -0.1365 7 6 6.1311 1.8982 -1.2591 8 1 7.1471 1.5364 -1.1997 9 6 5.4241 1.8157 -2.4746 10 7 4.2503 2.3711 -2.5846 11 14 6.1690 0.9103 -3.9288 12 1 6.4115 -0.5071 -3.5580 13 1 5.2328 0.9680 -5.0801 14 1 7.4551 1.5506 -4.3046 15 6 6.3076 3.0345 0.8765 16 6 7.7218 3.1713 0.6971 17 7 8.8436 3.2797 0.5549 18 6 5.6910 3.4962 2.0836 19 7 5.2018 3.8625 3.0413 20 6 4.1901 -0.0034 0.0000 21 6 3.4763 -1.1949 0.0057 22 7 4.1448 -2.4211 0.0122 23 6 3.5879 -3.6463 -0.0717 24 7 4.5502 -4.5314 -0.0345 25 6 5.7270 -3.9158 0.0809 26 7 5.5309 -2.6241 0.1135 27 7 2.1465 -1.1515 0.0056 28 1 -0.3633 0.0050 1.0277 29 1 -0.3633 0.8875 -0.5180 30 1 -0.3634 -0.8925 -0.5095 31 1 3.6430 3.2382 0.0675 32 1 3.7322 2.2532 -3.3961 33 1 5.2701 -0.0045 -0.0004 34 1 2.5325 -3.8594 -0.1566 35 1 6.6879 -4.4057 0.1378 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001158218332.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:19:29 Heat of formation + Delta-G solvation = 200.095700 kcal Electronic energy + Delta-G solvation = -25897.130218 eV Core-core repulsion = 22125.526320 eV Total energy + Delta-G solvation = -3771.603898 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 322.099 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -43.42387 -41.99361 -39.41350 -37.24362 -36.62941 -36.20247 -35.44464 -33.75389 -32.63494 -32.18396 -31.26573 -29.41115 -28.81566 -25.91702 -24.62890 -23.28189 -22.78067 -22.30485 -20.75748 -19.63636 -19.35524 -18.91428 -17.89602 -17.18605 -16.90467 -16.40769 -16.36280 -16.09755 -15.95731 -15.31580 -15.14947 -14.76588 -14.54097 -14.46324 -13.99650 -13.74866 -13.57351 -13.49519 -13.40020 -13.32382 -13.22899 -13.10173 -13.06701 -12.81206 -12.64613 -12.16526 -11.91841 -11.63274 -11.57676 -11.31028 -11.03101 -10.46201 -10.35576 -10.02722 -9.49319 -8.81031 -7.26124 -0.48640 0.01830 0.55425 0.80971 0.98332 1.25973 1.37205 1.42216 1.83654 1.88897 1.95995 2.02156 2.16269 2.44730 2.53850 2.83405 2.99011 3.26072 3.30427 3.39985 3.52361 3.74598 3.98805 4.08055 4.34263 4.45915 4.57197 4.58038 4.81892 4.85445 4.89211 5.05890 5.25082 5.29161 5.34952 5.47226 5.75235 5.82757 5.91995 6.06562 6.44549 6.60628 6.89124 7.07095 7.21864 7.26730 7.58686 Molecular weight = 322.10amu Principal moments of inertia in cm(-1) A = 0.009215 B = 0.005641 C = 0.005151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3037.773246 B = 4962.336024 C = 5434.428966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.376 3.624 3 N -0.586 5.586 4 C 0.485 3.515 5 N -0.619 5.619 6 C 0.374 3.626 7 C -0.371 4.371 8 H 0.110 0.890 9 C 0.050 3.950 10 N -0.722 5.722 11 Si 0.966 3.034 12 H -0.261 1.261 13 H -0.255 1.255 14 H -0.250 1.250 15 C -0.308 4.308 16 C 0.330 3.670 17 N -0.546 5.546 18 C 0.314 3.686 19 N -0.548 5.548 20 C -0.283 4.283 21 C 0.420 3.580 22 N -0.342 5.342 23 C 0.297 3.703 24 N -0.553 5.553 25 C 0.215 3.785 26 N -0.336 5.336 27 N -0.580 5.580 28 H 0.102 0.898 29 H 0.095 0.905 30 H 0.105 0.895 31 H 0.413 0.587 32 H 0.314 0.686 33 H 0.148 0.852 34 H 0.257 0.743 35 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.840 -11.087 -6.009 15.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.107 3.893 3 N -0.312 5.312 4 C 0.241 3.759 5 N -0.242 5.242 6 C 0.270 3.730 7 C -0.399 4.399 8 H 0.128 0.872 9 C -0.181 4.181 10 N -0.340 5.340 11 Si 0.786 3.214 12 H -0.185 1.185 13 H -0.178 1.178 14 H -0.173 1.173 15 C -0.327 4.327 16 C 0.022 3.978 17 N -0.228 5.228 18 C 0.007 3.993 19 N -0.231 5.231 20 C -0.314 4.314 21 C 0.188 3.812 22 N -0.127 5.127 23 C 0.002 3.998 24 N -0.279 5.279 25 C -0.087 4.087 26 N -0.161 5.161 27 N -0.305 5.305 28 H 0.120 0.880 29 H 0.114 0.886 30 H 0.124 0.876 31 H 0.251 0.749 32 H 0.126 0.874 33 H 0.166 0.834 34 H 0.272 0.728 35 H 0.276 0.724 Dipole moment (debyes) X Y Z Total from point charges -9.312 -10.031 -4.866 14.526 hybrid contribution 0.863 0.207 -0.761 1.169 sum -8.449 -9.824 -5.628 14.127 Atomic orbital electron populations 1.20715 0.81812 1.05499 1.05257 1.23567 0.98992 0.80405 0.86361 1.67807 1.07087 1.31471 1.24801 1.18010 0.87702 0.85606 0.84570 1.41244 1.04840 1.05350 1.72791 1.16671 0.79476 0.87528 0.89288 1.20418 1.01245 1.26137 0.92056 0.87188 1.26924 0.94800 0.93729 1.02638 1.69429 1.09323 1.24635 1.30630 0.85357 0.80375 0.79466 0.76234 1.18475 1.17819 1.17314 1.12913 0.84799 1.38687 0.96319 1.24718 0.91300 0.90317 0.91420 1.81060 1.12711 1.18133 1.10916 1.25280 0.92177 0.90373 0.91452 1.81073 1.10242 1.18553 1.13195 1.21723 1.03324 0.90777 1.15538 1.17575 0.88505 0.82646 0.92472 1.47462 1.05446 1.05351 1.54490 1.27076 1.02281 0.78794 0.91632 1.70781 0.98743 1.33136 1.25244 1.27061 0.99712 0.87238 0.94697 1.78342 0.90040 1.20525 1.27160 1.67532 1.05414 1.31968 1.25631 0.87975 0.88599 0.87596 0.74898 0.87361 0.83430 0.72767 0.72378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.29 10.31 71.23 0.73 -0.56 16 2 C 0.38 10.61 7.64 138.78 1.06 11.67 16 3 N -0.59 -19.58 10.36 -185.45 -1.92 -21.50 16 4 C 0.48 17.85 6.49 132.99 0.86 18.72 16 5 N -0.62 -23.42 3.31 -184.35 -0.61 -24.03 16 6 C 0.37 15.02 4.98 38.98 0.19 15.21 16 7 C -0.37 -14.58 6.60 23.08 0.15 -14.42 16 8 H 0.11 4.41 7.25 -2.91 -0.02 4.39 16 9 C 0.05 1.81 4.99 85.56 0.43 2.24 16 10 N -0.72 -25.88 11.29 21.98 0.25 -25.63 16 11 Si 0.97 29.39 29.58 68.60 2.03 31.42 16 12 H -0.26 -8.36 7.11 99.48 0.71 -7.65 16 13 H -0.25 -7.20 7.11 99.48 0.71 -6.49 16 14 H -0.25 -7.65 7.11 99.48 0.71 -6.95 16 15 C -0.31 -13.19 5.88 -20.08 -0.12 -13.31 16 16 C 0.33 14.79 14.03 88.33 1.24 16.02 16 17 N -0.55 -25.41 18.54 19.01 0.35 -25.06 16 18 C 0.31 13.98 14.82 88.33 1.31 15.29 16 19 N -0.55 -25.46 18.54 19.00 0.35 -25.11 16 20 C -0.28 -10.52 8.41 22.70 0.19 -10.33 16 21 C 0.42 14.02 7.59 132.59 1.01 15.03 16 22 N -0.34 -10.56 3.80 -195.76 -0.74 -11.30 16 23 C 0.30 7.30 12.30 180.24 2.22 9.52 16 24 N -0.55 -13.95 11.19 -203.67 -2.28 -16.23 16 25 C 0.22 5.32 13.03 180.75 2.35 7.68 16 26 N -0.34 -10.67 12.12 -61.21 -0.74 -11.41 16 27 N -0.58 -16.91 9.93 -185.13 -1.84 -18.75 16 28 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 29 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 30 H 0.11 1.40 8.14 -2.38 -0.02 1.38 16 31 H 0.41 15.30 8.94 -92.71 -0.83 14.47 16 32 H 0.31 10.24 8.29 -92.71 -0.77 9.47 16 33 H 0.15 5.99 6.03 -2.91 -0.02 5.97 16 34 H 0.26 4.26 8.06 -2.91 -0.02 4.24 16 35 H 0.26 3.97 8.06 -2.91 -0.02 3.94 16 Total: -1.00 -55.95 338.10 6.86 -49.09 By element: Atomic # 1 Polarization: 25.37 SS G_CDS: 0.38 Total: 25.75 kcal Atomic # 6 Polarization: 61.12 SS G_CDS: 11.63 Total: 72.75 kcal Atomic # 7 Polarization: -171.84 SS G_CDS: -7.18 Total: -179.02 kcal Atomic # 14 Polarization: 29.39 SS G_CDS: 2.03 Total: 31.42 kcal Total: -55.95 6.86 -49.09 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158218332.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 249.185 kcal (2) G-P(sol) polarization free energy of solvation -55.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 193.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.089 kcal (6) G-S(sol) free energy of system = (1) + (5) 200.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds