Wall clock time and date at job start Tue Mar 31 2020 14:04:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.46975 * 2 1 4 4 N 1.46507 * 109.46743 * 180.02562 * 3 2 1 5 5 C 1.46505 * 119.99707 * 269.99416 * 4 3 2 6 6 C 1.50691 * 109.47604 * 270.00345 * 5 4 3 7 7 H 1.08007 * 119.99833 * 0.02562 * 6 5 4 8 8 C 1.37878 * 120.00394 * 179.97438 * 6 5 4 9 9 N 1.31514 * 119.99769 * 0.02562 * 8 6 5 10 10 Si 1.86797 * 120.00217 * 180.02562 * 8 6 5 11 11 H 1.48500 * 109.47003 * 60.00211 * 10 8 6 12 12 H 1.48504 * 109.47089 * 180.02562 * 10 8 6 13 13 H 1.48504 * 109.47002 * 300.00108 * 10 8 6 14 14 C 1.34773 * 120.00264 * 90.00465 * 4 3 2 15 15 S 1.71198 * 120.00166 * 179.97438 * 14 4 3 16 16 N 1.34780 * 120.00000 * 359.97438 * 14 4 3 17 17 C 1.39332 * 120.00177 * 185.53022 * 16 14 4 18 18 C 1.39170 * 119.92071 * 42.12352 * 17 16 14 19 19 C 1.37629 * 120.07717 * 180.27871 * 18 17 16 20 20 C 1.39824 * 119.91840 * 359.45139 * 19 18 17 21 21 C 1.47433 * 120.07882 * 180.25672 * 20 19 18 22 22 O 1.21512 * 120.00618 * 180.31530 * 21 20 19 23 23 O 1.34759 * 119.99921 * 0.31122 * 21 20 19 24 24 C 1.39830 * 119.84810 * 0.56774 * 20 19 18 25 25 C 1.37628 * 119.91434 * 359.70854 * 24 20 19 26 26 H 1.09001 * 109.47297 * 300.00021 * 1 2 3 27 27 H 1.09002 * 109.47273 * 60.00081 * 1 2 3 28 28 H 1.09003 * 109.46975 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47297 * 239.99979 * 2 1 3 30 30 H 1.09002 * 109.47273 * 119.99919 * 2 1 3 31 31 H 1.08998 * 109.47369 * 60.00332 * 3 2 1 32 32 H 1.08999 * 109.47301 * 299.99600 * 3 2 1 33 33 H 1.09005 * 109.46828 * 30.00625 * 5 4 3 34 34 H 1.08997 * 109.46663 * 150.00347 * 5 4 3 35 35 H 0.96999 * 120.00166 * 179.97438 * 9 8 6 36 36 H 0.97005 * 119.99440 * 5.53045 * 16 14 4 37 37 H 1.07999 * 119.96347 * 359.97438 * 18 17 16 38 38 H 1.07997 * 120.04163 * 179.70286 * 19 18 17 39 39 H 0.96699 * 117.00024 * 180.02562 * 23 21 20 40 40 H 1.07994 * 120.04033 * 179.68539 * 24 20 19 41 41 H 1.08007 * 119.95378 * 179.97438 * 25 24 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.2380 1.4424 1.2679 6 6 4.4894 2.8631 1.7030 7 1 4.1379 3.6841 1.0956 8 6 5.1671 3.1149 2.8770 9 7 5.5947 2.1152 3.6168 10 14 5.4781 4.8760 3.4167 11 1 4.1803 5.5756 3.5945 12 1 6.2212 4.8758 4.7025 13 1 6.2804 5.5765 2.3819 14 6 4.1784 1.4427 -1.1680 15 16 5.8904 1.4433 -1.1687 16 7 3.5041 1.4425 -2.3350 17 6 4.1955 1.3265 -3.5391 18 6 5.2459 0.4205 -3.6520 19 6 5.9347 0.3073 -4.8381 20 6 5.5705 1.0957 -5.9340 21 6 6.3023 0.9733 -7.2080 22 8 5.9885 1.6632 -8.1578 23 8 7.3194 0.0963 -7.3192 24 6 4.5149 2.0052 -5.8169 25 6 3.8343 2.1171 -4.6260 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.6767 1.9564 0.8900 32 1 1.6767 1.9564 -0.8900 33 1 3.6492 0.9284 2.0277 34 1 5.1903 0.9286 1.1371 35 1 6.0718 2.2923 4.4426 36 1 2.5374 1.5231 -2.3365 37 1 5.5240 -0.1909 -2.8064 38 1 6.7528 -0.3924 -4.9236 39 1 7.7694 0.0520 -8.1740 40 1 4.2344 2.6193 -6.6598 41 1 3.0191 2.8197 -4.5347 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001197095487.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:04:29 Heat of formation + Delta-G solvation = -62.557914 kcal Electronic energy + Delta-G solvation = -24279.239227 eV Core-core repulsion = 20670.644606 eV Total energy + Delta-G solvation = -3608.594621 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 322.114 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.64978 -40.99296 -39.53756 -37.10535 -36.74407 -35.16533 -34.11919 -32.15682 -31.38108 -29.42376 -28.09430 -26.00575 -24.67759 -24.26891 -23.30014 -22.24270 -21.73468 -19.67329 -19.24010 -18.88428 -18.61539 -18.27559 -17.13033 -16.61492 -16.49539 -16.30470 -16.00202 -15.67317 -15.45286 -15.24657 -14.59885 -14.48953 -14.26821 -14.19462 -13.64812 -13.49307 -13.41539 -13.10063 -13.02542 -12.84491 -12.62209 -12.55467 -12.37801 -12.22606 -12.14107 -11.99051 -11.80661 -11.72577 -11.67413 -10.67351 -10.60835 -10.07821 -9.37583 -8.82966 -8.20944 -8.08093 -6.31836 -0.52732 0.42603 0.45418 0.95924 1.37626 1.43336 1.47751 1.52145 1.65915 2.12700 2.25527 2.42207 2.78111 3.12918 3.70577 3.80036 3.88106 3.94830 4.07243 4.20001 4.25202 4.36202 4.41743 4.48052 4.57400 4.76745 4.83988 4.99275 5.04670 5.10779 5.13281 5.19895 5.27104 5.30102 5.32378 5.38299 5.56582 5.61124 5.70789 5.76929 5.95610 6.01171 6.35389 6.72238 7.00474 7.34827 8.86766 Molecular weight = 322.11amu Principal moments of inertia in cm(-1) A = 0.013520 B = 0.003479 C = 0.003018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2070.463941 B = 8046.979443 C = 9275.918257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.134 4.134 3 C 0.083 3.917 4 N -0.528 5.528 5 C 0.256 3.744 6 C -0.528 4.528 7 H 0.050 0.950 8 C 0.019 3.981 9 N -0.921 5.921 10 Si 0.958 3.042 11 H -0.261 1.261 12 H -0.281 1.281 13 H -0.284 1.284 14 C 0.573 3.427 15 S -0.722 6.722 16 N -0.626 5.626 17 C 0.170 3.830 18 C -0.102 4.102 19 C -0.051 4.051 20 C -0.148 4.148 21 C 0.538 3.462 22 O -0.547 6.547 23 O -0.506 6.506 24 C -0.045 4.045 25 C -0.133 4.133 26 H 0.059 0.941 27 H 0.075 0.925 28 H 0.067 0.933 29 H 0.066 0.934 30 H 0.054 0.946 31 H 0.097 0.903 32 H 0.102 0.898 33 H 0.035 0.965 34 H 0.041 0.959 35 H 0.266 0.734 36 H 0.423 0.577 37 H 0.129 0.871 38 H 0.148 0.852 39 H 0.433 0.567 40 H 0.154 0.846 41 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.189 -4.898 -17.236 21.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.173 4.173 3 C -0.042 4.042 4 N -0.229 5.229 5 C 0.135 3.865 6 C -0.567 4.567 7 H 0.068 0.932 8 C -0.181 4.181 9 N -0.561 5.561 10 Si 0.784 3.216 11 H -0.185 1.185 12 H -0.206 1.206 13 H -0.209 1.209 14 C 0.211 3.789 15 S -0.589 6.589 16 N -0.257 5.257 17 C 0.075 3.925 18 C -0.125 4.125 19 C -0.071 4.071 20 C -0.150 4.150 21 C 0.384 3.616 22 O -0.440 6.440 23 O -0.319 6.319 24 C -0.064 4.064 25 C -0.154 4.154 26 H 0.078 0.922 27 H 0.094 0.906 28 H 0.086 0.914 29 H 0.084 0.916 30 H 0.073 0.927 31 H 0.115 0.885 32 H 0.120 0.880 33 H 0.053 0.947 34 H 0.059 0.941 35 H 0.075 0.925 36 H 0.267 0.733 37 H 0.147 0.853 38 H 0.166 0.834 39 H 0.295 0.705 40 H 0.172 0.828 41 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -10.355 -4.748 -16.709 20.223 hybrid contribution -0.140 0.834 0.338 0.911 sum -10.495 -3.914 -16.371 19.836 Atomic orbital electron populations 1.21671 0.92117 1.03066 1.03116 1.21895 0.98432 0.94515 1.02483 1.22332 0.76981 0.99443 1.05398 1.47792 1.08009 1.62032 1.05082 1.19413 0.92687 0.97490 0.76886 1.21301 1.37216 0.92003 1.06210 0.93153 1.25600 0.94859 1.01096 0.96506 1.70006 1.38635 1.32667 1.14769 0.85607 0.78718 0.80097 0.77213 1.18518 1.20617 1.20950 1.21710 0.93865 0.80940 0.82364 1.93413 0.94184 1.77350 1.93955 1.42040 1.10415 1.71565 1.01684 1.17870 0.95082 0.95283 0.84218 1.21321 0.95430 0.98117 0.97626 1.21272 0.98198 0.97403 0.90266 1.19181 1.00297 1.03503 0.92042 1.20772 0.77472 0.75809 0.87505 1.90868 1.67203 1.44928 1.40978 1.84559 1.45114 1.57562 1.44690 1.21118 0.92195 0.95303 0.97797 1.21038 1.03452 0.99262 0.91646 0.92153 0.90624 0.91384 0.91577 0.92733 0.88489 0.87991 0.94731 0.94062 0.92479 0.73333 0.85339 0.83384 0.70525 0.82823 0.81927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.96 9.91 71.98 0.71 -1.24 16 2 C -0.13 -2.74 6.26 30.59 0.19 -2.55 16 3 C 0.08 2.04 5.22 86.38 0.45 2.49 16 4 N -0.53 -19.43 2.46 -714.15 -1.75 -21.19 16 5 C 0.26 12.48 4.92 85.63 0.42 12.90 16 6 C -0.53 -28.44 9.39 25.60 0.24 -28.20 16 7 H 0.05 2.71 7.81 -2.91 -0.02 2.69 16 8 C 0.02 1.07 5.46 84.66 0.46 1.53 16 9 N -0.92 -53.74 13.29 21.45 0.28 -53.45 16 10 Si 0.96 44.14 29.54 68.60 2.03 46.17 16 11 H -0.26 -11.17 7.11 99.48 0.71 -10.46 16 12 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 13 H -0.28 -13.43 7.11 99.48 0.71 -12.72 16 14 C 0.57 21.20 7.45 179.05 1.33 22.54 16 15 S -0.72 -34.84 24.46 -56.49 -1.38 -36.22 16 16 N -0.63 -16.31 5.17 -189.98 -0.98 -17.30 16 17 C 0.17 4.42 5.90 38.40 0.23 4.65 16 18 C -0.10 -2.96 7.82 22.35 0.17 -2.79 16 19 C -0.05 -1.28 9.60 22.51 0.22 -1.06 16 20 C -0.15 -3.47 5.88 -20.09 -0.12 -3.59 16 21 C 0.54 12.08 8.26 70.24 0.58 12.66 16 22 O -0.55 -14.65 17.12 19.80 0.34 -14.31 16 23 O -0.51 -8.34 12.67 -56.69 -0.72 -9.06 16 24 C -0.04 -0.94 9.58 22.51 0.22 -0.72 16 25 C -0.13 -2.70 9.95 22.35 0.22 -2.48 16 26 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 27 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 28 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 29 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 30 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 31 H 0.10 2.56 8.07 -2.39 -0.02 2.54 16 32 H 0.10 1.76 6.29 -2.39 -0.02 1.75 16 33 H 0.03 1.72 8.07 -2.38 -0.02 1.70 16 34 H 0.04 2.36 6.58 -2.39 -0.02 2.34 16 35 H 0.27 14.78 8.31 -92.71 -0.77 14.01 16 36 H 0.42 7.51 6.52 -92.70 -0.60 6.91 16 37 H 0.13 4.39 6.27 -4.50 -0.03 4.36 16 38 H 0.15 3.33 7.60 -2.91 -0.02 3.30 16 39 H 0.43 2.90 9.11 -74.06 -0.67 2.22 16 40 H 0.15 2.77 7.64 -2.91 -0.02 2.75 16 41 H 0.16 2.25 8.06 -2.91 -0.02 2.23 16 Total: -1.00 -77.44 362.67 2.93 -74.51 By element: Atomic # 1 Polarization: 16.94 SS G_CDS: -0.21 Total: 16.72 kcal Atomic # 6 Polarization: 8.80 SS G_CDS: 5.33 Total: 14.13 kcal Atomic # 7 Polarization: -89.49 SS G_CDS: -2.45 Total: -91.94 kcal Atomic # 8 Polarization: -22.99 SS G_CDS: -0.38 Total: -23.37 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 2.03 Total: 46.17 kcal Atomic # 16 Polarization: -34.84 SS G_CDS: -1.38 Total: -36.22 kcal Total: -77.44 2.93 -74.51 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001197095487.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.952 kcal (2) G-P(sol) polarization free energy of solvation -77.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.510 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds