Wall clock time and date at job start Tue Mar 31 2020 14:04:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53005 * 109.47001 * 2 1 4 4 N 1.46496 * 109.46933 * 179.97438 * 3 2 1 5 5 C 1.46504 * 119.99888 * 269.99696 * 4 3 2 6 6 C 1.50707 * 109.46940 * 270.00265 * 5 4 3 7 7 H 1.07994 * 120.00381 * 0.02562 * 6 5 4 8 8 C 1.37876 * 119.99557 * 180.02562 * 6 5 4 9 9 N 1.31512 * 120.00300 * 359.97438 * 8 6 5 10 10 Si 1.86803 * 119.99625 * 180.02562 * 8 6 5 11 11 H 1.48495 * 109.47197 * 0.02562 * 10 8 6 12 12 H 1.48503 * 109.47126 * 120.00264 * 10 8 6 13 13 H 1.48505 * 109.47274 * 239.99586 * 10 8 6 14 14 C 1.34771 * 120.00433 * 90.00155 * 4 3 2 15 15 S 1.71200 * 120.00501 * 179.97438 * 14 4 3 16 16 N 1.34777 * 119.99686 * 359.97438 * 14 4 3 17 17 C 1.40088 * 120.00246 * 185.52326 * 16 14 4 18 18 C 1.38851 * 120.00554 * 221.89152 * 17 16 14 19 19 C 1.38172 * 120.06627 * 179.75438 * 18 17 16 20 20 C 1.38550 * 120.12103 * 0.45263 * 19 18 17 21 21 C 1.39282 * 119.94819 * 359.54620 * 20 19 18 22 22 C 1.38501 * 119.89105 * 0.23067 * 21 20 19 23 23 O 1.36509 * 108.64842 * 180.25322 * 21 20 19 24 24 C 1.43976 * 105.49814 * 342.69424 * 23 21 20 25 25 O 1.36612 * 131.44700 * 179.85605 * 20 19 18 26 26 H 1.09000 * 109.46882 * 60.00742 * 1 2 3 27 27 H 1.09006 * 109.47122 * 179.97438 * 1 2 3 28 28 H 1.08993 * 109.47619 * 300.00459 * 1 2 3 29 29 H 1.08993 * 109.47619 * 239.99541 * 2 1 3 30 30 H 1.09000 * 109.46882 * 119.99258 * 2 1 3 31 31 H 1.09002 * 109.47118 * 59.99450 * 3 2 1 32 32 H 1.08994 * 109.46791 * 299.99797 * 3 2 1 33 33 H 1.09001 * 109.47069 * 30.00229 * 5 4 3 34 34 H 1.09002 * 109.47228 * 150.00689 * 5 4 3 35 35 H 0.97004 * 120.00347 * 180.02562 * 9 8 6 36 36 H 0.97003 * 120.00147 * 5.52673 * 16 14 4 37 37 H 1.07991 * 119.96245 * 359.97438 * 18 17 16 38 38 H 1.07992 * 119.94022 * 180.33656 * 19 18 17 39 39 H 1.07996 * 120.01279 * 180.02562 * 22 21 20 40 40 H 1.09000 * 110.57414 * 268.59772 * 24 23 21 41 41 H 1.08992 * 110.57227 * 145.72037 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5049 1.4425 0.0006 5 6 4.2369 1.4428 1.2697 6 6 4.4878 2.8638 1.7046 7 1 4.1368 3.6845 1.0967 8 6 5.1655 3.1159 2.8785 9 7 5.5925 2.1164 3.6190 10 14 5.4759 4.8772 3.4179 11 1 4.8973 5.8103 2.4181 12 1 4.8383 5.1100 4.7388 13 1 6.9384 5.1113 3.5262 14 6 4.1793 1.4424 -1.1662 15 16 5.8913 1.4430 -1.1655 16 7 3.5060 1.4417 -2.3337 17 6 4.2021 1.3248 -3.5438 18 6 3.8405 2.1087 -4.6314 19 6 4.5295 1.9980 -5.8239 20 6 5.5766 1.0983 -5.9410 21 6 5.9417 0.3107 -4.8519 22 6 5.2535 0.4255 -3.6555 23 8 6.9927 -0.4800 -5.2178 24 6 7.0032 -0.4640 -6.6574 25 8 6.3997 0.8003 -6.9898 26 1 -0.3633 0.5137 -0.8901 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 1.8933 -0.5139 -0.8899 30 1 1.8932 -0.5137 0.8901 31 1 1.6765 1.9564 0.8899 32 1 1.6766 1.9563 -0.8900 33 1 3.6474 0.9291 2.0292 34 1 5.1894 0.9290 1.1399 35 1 6.0690 2.2938 4.4451 36 1 2.5393 1.5223 -2.3361 37 1 3.0223 2.8080 -4.5439 38 1 4.2501 2.6125 -6.6668 39 1 5.5352 -0.1839 -2.8096 40 1 6.4096 -1.2877 -7.0540 41 1 8.0251 -0.5112 -7.0335 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001198273355.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:04:27 Heat of formation + Delta-G solvation = -4.997212 kcal Electronic energy + Delta-G solvation = -24745.986901 eV Core-core repulsion = 21139.888300 eV Total energy + Delta-G solvation = -3606.098602 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 322.114 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.06576 -39.75536 -37.87014 -36.19352 -34.99603 -33.66466 -32.36527 -30.46373 -29.25492 -27.65455 -26.75564 -25.64388 -23.80398 -23.11604 -22.27821 -22.19158 -20.56603 -18.81714 -17.86960 -17.81486 -17.06566 -16.79855 -16.53355 -15.81986 -14.97519 -14.82408 -14.66395 -14.52941 -14.33747 -14.01362 -13.75384 -13.72375 -13.14442 -12.92871 -12.78993 -12.75308 -12.24146 -12.06633 -12.03378 -11.54776 -11.39434 -11.19141 -11.03669 -10.82200 -10.76259 -10.73830 -10.33190 -10.16078 -9.81648 -9.02302 -8.52770 -8.44331 -7.70840 -7.01051 -6.27215 -6.09428 -4.13491 1.03784 1.34723 2.05938 2.52891 2.77864 3.17981 3.29050 3.38400 3.40633 3.49441 3.66584 3.70798 4.42041 4.60567 4.62455 4.77046 4.84415 4.88260 5.03308 5.10034 5.13713 5.25623 5.27640 5.28512 5.55936 5.60149 5.67432 5.69647 5.88308 5.99876 6.11384 6.15634 6.18755 6.21249 6.39136 6.48263 6.73318 7.07037 7.19236 7.38553 7.46274 7.83841 7.85726 8.08362 8.85050 9.49888 10.99136 Molecular weight = 322.11amu Principal moments of inertia in cm(-1) A = 0.013377 B = 0.003839 C = 0.003314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2092.646072 B = 7292.459613 C = 8446.004406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.142 4.142 3 C 0.090 3.910 4 N -0.529 5.529 5 C 0.236 3.764 6 C -0.521 4.521 7 H 0.057 0.943 8 C 0.069 3.931 9 N -0.889 5.889 10 Si 0.900 3.100 11 H -0.274 1.274 12 H -0.285 1.285 13 H -0.281 1.281 14 C 0.549 3.451 15 S -0.623 6.623 16 N -0.651 5.651 17 C 0.163 3.837 18 C -0.124 4.124 19 C -0.096 4.096 20 C 0.023 3.977 21 C 0.039 3.961 22 C -0.055 4.055 23 O -0.304 6.304 24 C 0.213 3.787 25 O -0.312 6.312 26 H 0.053 0.947 27 H 0.057 0.943 28 H 0.059 0.941 29 H 0.061 0.939 30 H 0.076 0.924 31 H 0.101 0.899 32 H 0.065 0.935 33 H 0.040 0.960 34 H 0.080 0.920 35 H 0.264 0.736 36 H 0.402 0.598 37 H 0.136 0.864 38 H 0.136 0.864 39 H 0.157 0.843 40 H 0.080 0.920 41 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.014 -5.522 -17.275 20.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.181 4.181 3 C -0.037 4.037 4 N -0.231 5.231 5 C 0.118 3.882 6 C -0.560 4.560 7 H 0.075 0.925 8 C -0.134 4.134 9 N -0.528 5.528 10 Si 0.727 3.273 11 H -0.199 1.199 12 H -0.211 1.211 13 H -0.207 1.207 14 C 0.192 3.808 15 S -0.488 6.488 16 N -0.282 5.282 17 C 0.068 3.932 18 C -0.145 4.145 19 C -0.116 4.116 20 C -0.022 4.022 21 C -0.007 4.007 22 C -0.079 4.079 23 O -0.220 6.220 24 C 0.101 3.899 25 O -0.229 6.229 26 H 0.072 0.928 27 H 0.076 0.924 28 H 0.079 0.921 29 H 0.080 0.920 30 H 0.095 0.905 31 H 0.119 0.881 32 H 0.083 0.917 33 H 0.058 0.942 34 H 0.097 0.903 35 H 0.074 0.926 36 H 0.242 0.758 37 H 0.154 0.846 38 H 0.153 0.847 39 H 0.175 0.825 40 H 0.097 0.903 41 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -8.612 -5.568 -16.910 19.777 hybrid contribution -0.936 1.039 0.329 1.437 sum -9.548 -4.529 -16.581 19.663 Atomic orbital electron populations 1.21693 0.94843 1.02005 1.02021 1.21962 0.96276 0.96600 1.03301 1.21919 0.80651 0.97342 1.03739 1.47963 1.05865 1.62733 1.06565 1.20037 0.93883 0.99309 0.74993 1.21145 1.37429 0.91076 1.06327 0.92482 1.24818 0.94945 0.97450 0.96228 1.69922 1.37928 1.30661 1.14253 0.86415 0.78338 0.84423 0.78078 1.19881 1.21089 1.20675 1.22355 0.95655 0.81639 0.81179 1.93267 0.89325 1.73375 1.92819 1.42271 1.09333 1.73905 1.02674 1.16777 0.95893 0.95976 0.84551 1.20564 1.02594 0.99331 0.92020 1.19600 0.93736 0.99640 0.98593 1.19773 0.94988 1.00742 0.86732 1.19332 0.90726 0.95646 0.95000 1.20201 0.93602 0.98866 0.95186 1.87398 1.45937 1.66804 1.21878 1.25552 1.00459 0.85385 0.78483 1.87340 1.56586 1.38323 1.40630 0.92791 0.92354 0.92147 0.92013 0.90535 0.88080 0.91670 0.94221 0.90265 0.92636 0.75811 0.84585 0.84653 0.82548 0.90259 0.85524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 9.91 37.16 0.37 -0.91 16 2 C -0.14 -1.63 6.26 -26.73 -0.17 -1.80 16 3 C 0.09 1.23 5.22 -4.04 -0.02 1.21 16 4 N -0.53 -10.05 2.46 -177.08 -0.43 -10.48 16 5 C 0.24 5.70 4.92 -5.19 -0.03 5.68 16 6 C -0.52 -14.03 9.39 -34.44 -0.32 -14.35 16 7 H 0.06 1.56 7.81 -52.49 -0.41 1.15 16 8 C 0.07 1.90 5.46 -17.82 -0.10 1.80 16 9 N -0.89 -25.67 13.29 55.43 0.74 -24.94 16 10 Si 0.90 21.71 29.54 -169.99 -5.02 16.69 16 11 H -0.27 -6.57 7.11 56.52 0.40 -6.16 16 12 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 13 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 14 C 0.55 10.59 7.46 -86.92 -0.65 9.94 16 15 S -0.62 -15.12 24.46 -107.50 -2.63 -17.75 16 16 N -0.65 -9.48 5.21 -11.38 -0.06 -9.54 16 17 C 0.16 2.39 5.91 -83.65 -0.49 1.89 16 18 C -0.12 -1.47 9.96 -39.38 -0.39 -1.86 16 19 C -0.10 -1.13 10.05 -39.49 -0.40 -1.53 16 20 C 0.02 0.31 7.15 -39.08 -0.28 0.03 16 21 C 0.04 0.62 7.15 -39.10 -0.28 0.34 16 22 C -0.05 -0.91 7.87 -39.27 -0.31 -1.21 16 23 O -0.30 -4.52 11.40 -45.72 -0.52 -5.04 16 24 C 0.21 2.20 8.89 101.05 0.90 3.10 16 25 O -0.31 -4.03 11.41 -46.06 -0.53 -4.56 16 26 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 28 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 31 H 0.10 1.45 8.07 -51.93 -0.42 1.03 16 32 H 0.07 0.71 6.29 -51.93 -0.33 0.38 16 33 H 0.04 0.97 8.07 -51.93 -0.42 0.55 16 34 H 0.08 2.20 6.58 -51.93 -0.34 1.85 16 35 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 36 H 0.40 4.44 6.52 -40.82 -0.27 4.17 16 37 H 0.14 1.23 8.06 -52.49 -0.42 0.81 16 38 H 0.14 1.24 8.06 -52.49 -0.42 0.82 16 39 H 0.16 2.92 6.26 -49.82 -0.31 2.61 16 40 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.13 0.92 8.14 -51.93 -0.42 0.50 16 LS Contribution 355.69 15.07 5.36 5.36 Total: -1.00 -34.21 355.69 -10.70 -44.91 By element: Atomic # 1 Polarization: 8.46 SS G_CDS: -5.43 Total: 3.02 kcal Atomic # 6 Polarization: 4.49 SS G_CDS: -2.17 Total: 2.32 kcal Atomic # 7 Polarization: -45.20 SS G_CDS: 0.24 Total: -44.96 kcal Atomic # 8 Polarization: -8.55 SS G_CDS: -1.05 Total: -9.59 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Atomic # 16 Polarization: -15.12 SS G_CDS: -2.63 Total: -17.75 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -34.21 -10.70 -44.91 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001198273355.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.908 kcal (2) G-P(sol) polarization free energy of solvation -34.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.905 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds