Wall clock time and date at job start Tue Mar 31 2020 13:20:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30388 * 126.18293 * 2 1 4 4 N 1.28666 * 109.53638 * 179.73115 * 3 2 1 5 5 C 1.31294 * 109.23757 * 0.44690 * 4 3 2 6 6 C 1.47724 * 126.38521 * 179.82758 * 5 4 3 7 7 C 1.39700 * 120.01724 * 179.41371 * 6 5 4 8 8 C 1.37655 * 119.98065 * 179.69600 * 7 6 5 9 9 C 1.39558 * 120.01529 * 0.57796 * 8 7 6 10 10 C 1.48154 * 119.98575 * 179.69567 * 9 8 7 11 11 C 1.39367 * 120.16837 * 129.74263 * 10 9 8 12 12 C 1.37985 * 119.93686 * 179.75356 * 11 10 9 13 13 C 1.38462 * 120.28030 * 0.53208 * 12 11 10 14 14 C 1.38111 * 120.34126 * 359.74361 * 13 12 11 15 15 C 1.38753 * 120.05426 * 359.97438 * 14 13 12 16 16 O 1.35643 * 120.14143 * 179.97438 * 15 14 13 17 17 C 1.34812 * 117.00047 * 354.40215 * 16 15 14 18 18 H 1.08001 * 119.99728 * 5.06257 * 17 16 15 19 19 C 1.38646 * 120.00519 * 185.05972 * 17 16 15 20 20 N 1.31561 * 119.99551 * 0.02562 * 19 17 16 21 21 Si 1.86794 * 120.00460 * 179.97438 * 19 17 16 22 22 H 1.48509 * 109.47101 * 60.00075 * 21 19 17 23 23 H 1.48496 * 109.47427 * 180.02562 * 21 19 17 24 24 H 1.48501 * 109.47172 * 300.00479 * 21 19 17 25 25 C 1.39562 * 120.03599 * 359.72047 * 9 8 7 26 26 C 1.37654 * 120.01815 * 359.97438 * 25 9 8 27 27 O 1.34420 * 126.17816 * 180.02562 * 2 1 3 28 28 H 1.09002 * 109.47162 * 269.99835 * 1 2 3 29 29 H 1.09000 * 109.46939 * 29.99632 * 1 2 3 30 30 H 1.09003 * 109.47357 * 149.99723 * 1 2 3 31 31 H 1.08002 * 120.00928 * 359.97202 * 7 6 5 32 32 H 1.07994 * 119.99409 * 180.27866 * 8 7 6 33 33 H 1.08003 * 120.03041 * 0.02562 * 11 10 9 34 34 H 1.08004 * 119.85709 * 180.30346 * 12 11 10 35 35 H 1.08002 * 119.82909 * 179.76792 * 13 12 11 36 36 H 1.08000 * 119.96986 * 180.02562 * 14 13 12 37 37 H 0.96996 * 119.99876 * 179.97438 * 20 19 17 38 38 H 1.07999 * 119.99334 * 180.02562 * 25 9 8 39 39 H 1.07993 * 120.00954 * 179.97438 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2768 1.0524 0.0000 4 7 3.5095 0.6838 0.0057 5 6 3.5689 -0.6278 -0.0001 6 6 4.7966 -1.4494 -0.0002 7 6 4.7046 -2.8433 0.0056 8 6 5.8490 -3.6083 -0.0008 9 6 7.1009 -2.9915 -0.0008 10 6 8.3322 -3.8154 -0.0009 11 6 9.3427 -3.5647 -0.9274 12 6 10.4897 -4.3317 -0.9198 13 6 10.6373 -5.3579 -0.0021 14 6 9.6408 -5.6202 0.9175 15 6 8.4841 -4.8539 0.9263 16 8 7.5041 -5.1103 1.8283 17 6 7.6628 -6.1951 2.6128 18 1 8.5772 -6.7678 2.5638 19 6 6.6524 -6.5757 3.4825 20 7 5.5383 -5.8783 3.5419 21 14 6.8720 -8.0792 4.5690 22 1 8.0505 -7.8843 5.4515 23 1 5.6567 -8.2710 5.4004 24 1 7.0836 -9.2779 3.7184 25 6 7.1936 -1.5990 -0.0002 26 6 6.0501 -0.8327 -0.0002 27 8 2.3005 -1.0850 -0.0005 28 1 -0.3633 0.0000 1.0277 29 1 -0.3633 0.8900 -0.5138 30 1 -0.3634 -0.8900 -0.5139 31 1 3.7358 -3.3207 0.0105 32 1 5.7781 -4.6859 -0.0009 33 1 9.2300 -2.7679 -1.6477 34 1 11.2741 -4.1330 -1.6352 35 1 11.5365 -5.9561 -0.0052 36 1 9.7624 -6.4219 1.6309 37 1 4.8313 -6.1447 4.1501 38 1 8.1628 -1.1224 -0.0007 39 1 6.1220 0.2449 0.0006 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001239020472.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:20:50 Heat of formation + Delta-G solvation = 40.152496 kcal Electronic energy + Delta-G solvation = -25334.893804 eV Core-core repulsion = 21595.309089 eV Total energy + Delta-G solvation = -3739.584715 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.110 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -45.24991 -41.10188 -39.80394 -38.03194 -37.31894 -34.80085 -34.26215 -33.12533 -32.11524 -30.88194 -30.32736 -28.50510 -27.33315 -25.53044 -24.33821 -23.46828 -23.29391 -22.57745 -21.88808 -19.79962 -19.04321 -18.69452 -18.55354 -17.45548 -17.00443 -16.48218 -16.32864 -16.01612 -15.59637 -15.52934 -15.25087 -15.05222 -14.66648 -14.45086 -14.41491 -14.22488 -13.76147 -13.63949 -13.55375 -13.51410 -13.16955 -13.03456 -13.00445 -12.54712 -12.40775 -12.31408 -12.18810 -12.08399 -11.98595 -11.21519 -11.14550 -10.78642 -10.01902 -9.97135 -9.31621 -8.80472 -8.44822 -6.11228 -0.70140 0.33250 0.39677 0.72955 0.81526 1.12473 1.35075 1.35698 1.44670 1.49460 2.16845 2.66874 2.72795 2.88488 3.20209 3.28828 3.48258 3.72219 3.77645 3.89987 4.02122 4.15851 4.22530 4.29341 4.33905 4.38339 4.53046 4.55014 4.56925 4.69276 4.72137 4.78259 5.00965 5.02004 5.04040 5.14525 5.16794 5.28898 5.40006 5.49104 5.63798 5.74336 5.78269 5.85524 6.03627 6.23778 6.99649 7.11405 7.78974 8.75744 Molecular weight = 322.11amu Principal moments of inertia in cm(-1) A = 0.011299 B = 0.003756 C = 0.002901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2477.395677 B = 7453.913027 C = 9647.884929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 C 0.167 3.833 3 N -0.320 5.320 4 N -0.302 5.302 5 C 0.215 3.785 6 C -0.055 4.055 7 C -0.079 4.079 8 C -0.101 4.101 9 C 0.006 3.994 10 C -0.153 4.153 11 C -0.054 4.054 12 C -0.192 4.192 13 C -0.065 4.065 14 C -0.250 4.250 15 C 0.128 3.872 16 O -0.209 6.209 17 C -0.415 4.415 18 H 0.099 0.901 19 C -0.014 4.014 20 N -0.908 5.908 21 Si 1.009 2.991 22 H -0.260 1.260 23 H -0.275 1.275 24 H -0.259 1.259 25 C -0.113 4.113 26 C -0.062 4.062 27 O -0.230 6.230 28 H 0.118 0.882 29 H 0.126 0.874 30 H 0.113 0.887 31 H 0.131 0.869 32 H 0.106 0.894 33 H 0.151 0.849 34 H 0.153 0.847 35 H 0.144 0.856 36 H 0.119 0.881 37 H 0.270 0.730 38 H 0.160 0.840 39 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.412 6.425 -8.972 11.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.043 4.043 3 N -0.167 5.167 4 N -0.149 5.149 5 C 0.008 3.992 6 C -0.057 4.057 7 C -0.099 4.099 8 C -0.119 4.119 9 C 0.005 3.995 10 C -0.154 4.154 11 C -0.071 4.071 12 C -0.211 4.211 13 C -0.083 4.083 14 C -0.269 4.269 15 C 0.077 3.923 16 O -0.114 6.114 17 C -0.491 4.491 18 H 0.117 0.883 19 C -0.213 4.213 20 N -0.546 5.546 21 Si 0.830 3.170 22 H -0.185 1.185 23 H -0.199 1.199 24 H -0.183 1.183 25 C -0.131 4.131 26 C -0.081 4.081 27 O -0.110 6.110 28 H 0.136 0.864 29 H 0.145 0.855 30 H 0.132 0.868 31 H 0.148 0.852 32 H 0.124 0.876 33 H 0.169 0.831 34 H 0.171 0.829 35 H 0.162 0.838 36 H 0.137 0.863 37 H 0.079 0.921 38 H 0.177 0.823 39 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -2.506 7.822 -8.801 12.038 hybrid contribution -0.501 -2.212 0.954 2.460 sum -3.007 5.610 -7.846 10.103 Atomic orbital electron populations 1.20771 0.75982 1.07586 1.07031 1.29210 0.99549 0.78404 0.97150 1.74282 0.96094 1.26733 1.19575 1.74643 1.12805 1.08518 1.18924 1.25568 0.83873 0.90302 0.99490 1.17298 0.87269 0.91068 1.10088 1.21077 0.99160 0.91961 0.97680 1.21031 0.91999 0.99595 0.99266 1.19050 0.92101 0.93600 0.94757 1.18213 0.97029 0.99672 1.00518 1.21205 0.91431 0.98772 0.95736 1.21125 0.99200 0.98400 1.02352 1.21274 0.97453 0.96620 0.92927 1.21276 0.95916 1.04631 1.05125 1.19909 0.89275 0.93805 0.89345 1.83955 1.40719 1.43831 1.42881 1.21737 1.04239 1.04436 1.18705 0.88327 1.26389 0.94005 1.01972 0.98887 1.70179 1.06484 1.40436 1.37467 0.84769 0.78372 0.76375 0.77523 1.18463 1.19949 1.18294 1.21348 0.99471 0.91491 1.00754 1.21157 0.89409 1.01145 0.96365 1.84879 1.17166 1.38818 1.70164 0.86355 0.85548 0.86811 0.85156 0.87568 0.83136 0.82898 0.83796 0.86293 0.92089 0.82254 0.82834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.66 10.51 71.24 0.75 0.09 16 2 C 0.17 4.26 8.47 88.32 0.75 5.00 16 3 N -0.32 -10.07 12.22 -165.32 -2.02 -12.09 16 4 N -0.30 -10.54 11.91 -166.31 -1.98 -12.52 16 5 C 0.22 7.40 7.98 87.28 0.70 8.09 16 6 C -0.06 -1.93 5.88 -20.06 -0.12 -2.05 16 7 C -0.08 -2.98 9.71 22.49 0.22 -2.76 16 8 C -0.10 -4.20 8.76 22.45 0.20 -4.00 16 9 C 0.01 0.22 5.28 -20.01 -0.11 0.11 16 10 C -0.15 -6.05 5.48 -19.93 -0.11 -6.16 16 11 C -0.05 -1.64 9.51 22.48 0.21 -1.42 16 12 C -0.19 -5.34 10.03 22.26 0.22 -5.12 16 13 C -0.06 -2.04 10.03 22.29 0.22 -1.81 16 14 C -0.25 -10.27 9.16 22.36 0.20 -10.07 16 15 C 0.13 6.00 6.55 22.83 0.15 6.15 16 16 O -0.21 -11.71 8.09 -21.38 -0.17 -11.88 16 17 C -0.42 -23.08 9.49 67.92 0.64 -22.44 16 18 H 0.10 5.06 5.21 -2.91 -0.02 5.04 16 19 C -0.01 -0.75 5.49 84.83 0.47 -0.28 16 20 N -0.91 -53.67 13.67 21.61 0.30 -53.37 16 21 Si 1.01 41.77 29.55 68.60 2.03 43.80 16 22 H -0.26 -10.21 7.11 99.48 0.71 -9.50 16 23 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 24 H -0.26 -10.07 7.11 99.48 0.71 -9.37 16 25 C -0.11 -3.60 9.49 22.45 0.21 -3.39 16 26 C -0.06 -1.94 9.68 22.49 0.22 -1.72 16 27 O -0.23 -7.15 10.66 -8.86 -0.09 -7.24 16 28 H 0.12 1.01 8.14 -2.39 -0.02 0.99 16 29 H 0.13 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.11 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.13 4.61 7.92 -2.91 -0.02 4.59 16 32 H 0.11 4.97 7.67 -2.91 -0.02 4.95 16 33 H 0.15 3.54 8.04 -2.91 -0.02 3.52 16 34 H 0.15 3.01 8.06 -2.91 -0.02 2.99 16 35 H 0.14 3.49 8.06 -2.91 -0.02 3.47 16 36 H 0.12 5.00 5.64 -2.91 -0.02 4.98 16 37 H 0.27 14.84 8.31 -92.71 -0.77 14.07 16 38 H 0.16 4.06 8.04 -2.91 -0.02 4.04 16 39 H 0.15 4.19 7.85 -2.91 -0.02 4.17 16 Total: -1.00 -73.61 348.16 3.98 -69.62 By element: Atomic # 1 Polarization: 24.35 SS G_CDS: 1.10 Total: 25.45 kcal Atomic # 6 Polarization: -46.60 SS G_CDS: 4.83 Total: -41.77 kcal Atomic # 7 Polarization: -74.27 SS G_CDS: -3.70 Total: -77.98 kcal Atomic # 8 Polarization: -18.85 SS G_CDS: -0.27 Total: -19.12 kcal Atomic # 14 Polarization: 41.77 SS G_CDS: 2.03 Total: 43.80 kcal Total: -73.61 3.98 -69.62 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239020472.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.777 kcal (2) G-P(sol) polarization free energy of solvation -73.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.624 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds