Wall clock time and date at job start Tue Mar 31 2020 13:20:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.30959 * 126.43586 * 2 1 4 4 C 1.35250 * 105.57993 * 179.97438 * 3 2 1 5 5 C 1.48327 * 126.41684 * 180.02562 * 4 3 2 6 6 C 1.39456 * 119.99929 * 359.72430 * 5 4 3 7 7 C 1.37724 * 120.00506 * 179.72177 * 6 5 4 8 8 C 1.39505 * 119.99723 * 0.55520 * 7 6 5 9 9 C 1.48229 * 120.00791 * 179.69887 * 8 7 6 10 10 C 1.39482 * 120.05316 * 179.73861 * 9 8 7 11 11 C 1.37820 * 119.93851 * 179.78771 * 10 9 8 12 12 C 1.39020 * 120.05732 * 0.47029 * 11 10 9 13 13 O 1.35679 * 119.94254 * 179.76479 * 12 11 10 14 14 C 1.34813 * 117.00015 * 174.47309 * 13 12 11 15 15 H 1.07997 * 119.99977 * 5.05545 * 14 13 12 16 16 C 1.38655 * 120.00142 * 185.05222 * 14 13 12 17 17 N 1.31546 * 120.00074 * 0.02562 * 16 14 13 18 18 Si 1.86805 * 119.99753 * 179.97438 * 16 14 13 19 19 H 1.48502 * 109.46673 * 90.00422 * 18 16 14 20 20 H 1.48498 * 109.47068 * 209.99961 * 18 16 14 21 21 H 1.48496 * 109.47358 * 330.00405 * 18 16 14 22 22 C 1.39020 * 120.11083 * 359.78521 * 12 11 10 23 23 C 1.37810 * 120.05617 * 359.97438 * 22 12 11 24 24 C 1.39504 * 119.98652 * 359.71549 * 8 7 6 25 25 C 1.37727 * 119.99548 * 0.02562 * 24 8 7 26 26 N 1.30810 * 107.15928 * 359.97438 * 4 3 2 27 27 O 1.21285 * 110.08814 * 359.75056 * 26 4 3 28 28 H 1.09004 * 109.46748 * 89.99544 * 1 2 3 29 29 H 1.08994 * 109.47278 * 209.99888 * 1 2 3 30 30 H 1.09004 * 109.46674 * 330.00645 * 1 2 3 31 31 H 1.08002 * 119.99278 * 0.02562 * 6 5 4 32 32 H 1.08007 * 120.00245 * 180.24572 * 7 6 5 33 33 H 1.07994 * 120.03115 * 0.03116 * 10 9 8 34 34 H 1.08005 * 119.97060 * 180.23600 * 11 10 9 35 35 H 0.97000 * 120.00539 * 179.97438 * 17 16 14 36 36 H 1.07999 * 119.96750 * 179.97438 * 22 12 11 37 37 H 1.08003 * 120.02714 * 179.97438 * 23 22 12 38 38 H 1.07996 * 120.00222 * 179.97438 * 24 8 7 39 39 H 1.07995 * 119.99736 * 179.97438 * 25 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2849 1.0536 0.0000 4 6 3.5487 0.5721 0.0006 5 6 4.7965 1.3740 0.0014 6 6 4.7302 2.7670 -0.0043 7 6 5.8887 3.5117 0.0022 8 6 7.1287 2.8726 0.0027 9 6 8.3757 3.6739 0.0030 10 6 9.6160 3.0358 0.0090 11 6 10.7740 3.7832 0.0048 12 6 10.7066 5.1717 0.0045 13 8 11.8480 5.9052 0.0052 14 6 11.7167 7.2418 -0.1109 15 1 10.7339 7.6894 -0.1168 16 6 12.8435 8.0421 -0.2227 17 7 14.0407 7.4970 -0.2160 18 14 12.6614 9.8942 -0.3843 19 1 12.6618 10.5112 0.9665 20 1 13.7949 10.4358 -1.1762 21 1 11.3829 10.2078 -1.0714 22 6 9.4716 5.8100 0.0038 23 6 8.3108 5.0672 0.0030 24 6 7.1949 1.4791 0.0027 25 6 6.0361 0.7347 0.0016 26 7 3.4644 -0.7333 0.0015 27 8 2.3008 -1.0756 0.0064 28 1 -0.3633 0.0001 -1.0277 29 1 -0.3633 -0.8899 0.5138 30 1 -0.3633 0.8901 0.5138 31 1 3.7702 3.2617 -0.0088 32 1 5.8372 4.5905 0.0019 33 1 9.6690 1.9572 0.0130 34 1 11.7347 3.2896 0.0056 35 1 14.8290 8.0567 -0.2946 36 1 9.4219 6.8888 0.0040 37 1 7.3515 5.5636 0.0030 38 1 8.1547 0.9840 0.0027 39 1 6.0873 -0.3440 0.0011 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243590965.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:20:47 Heat of formation + Delta-G solvation = 89.555214 kcal Electronic energy + Delta-G solvation = -24186.665942 eV Core-core repulsion = 20449.223490 eV Total energy + Delta-G solvation = -3737.442452 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.110 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -45.72051 -39.66404 -38.73487 -36.69980 -35.89787 -33.96461 -32.54053 -31.47886 -31.32139 -30.15791 -29.15118 -28.00402 -25.64043 -24.53349 -23.65443 -22.76756 -21.75386 -21.04514 -20.33169 -18.37752 -18.24111 -17.92717 -17.33963 -16.33961 -15.86381 -15.26663 -14.81405 -14.63976 -14.12913 -13.98395 -13.89382 -13.83367 -13.79393 -13.55539 -13.48772 -13.24459 -12.83939 -12.51995 -12.43297 -12.09568 -11.90113 -11.79960 -11.44914 -11.39519 -11.12149 -11.03159 -10.85192 -10.58729 -10.46239 -10.34348 -9.45691 -9.13278 -8.96013 -8.61433 -8.34866 -7.04397 -6.60378 -4.16156 0.51061 1.08991 1.46445 2.00291 2.12907 2.56089 2.65399 3.05604 3.06612 3.11372 3.32687 3.79593 3.85001 3.89697 4.56371 4.64164 4.77945 4.81212 4.92476 4.95672 4.98052 5.00991 5.12219 5.21806 5.37550 5.45555 5.53110 5.57926 5.61507 5.69979 5.90906 6.07576 6.09008 6.18813 6.35330 6.45166 6.55329 6.59817 6.77610 6.87304 6.99336 7.15661 7.25428 7.30424 7.65983 7.84551 7.95790 8.84483 9.51907 10.56525 Molecular weight = 322.11amu Principal moments of inertia in cm(-1) A = 0.037931 B = 0.001956 C = 0.001863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 738.010166 B =14309.848055 C =15027.053037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.175 3.825 3 N -0.479 5.479 4 C 0.229 3.771 5 C -0.064 4.064 6 C -0.062 4.062 7 C -0.139 4.139 8 C 0.030 3.970 9 C -0.172 4.172 10 C -0.051 4.051 11 C -0.194 4.194 12 C 0.162 3.838 13 O -0.166 6.166 14 C -0.392 4.392 15 H 0.096 0.904 16 C 0.041 3.959 17 N -0.855 5.855 18 Si 0.944 3.056 19 H -0.272 1.272 20 H -0.276 1.276 21 H -0.266 1.266 22 C -0.237 4.237 23 C -0.046 4.046 24 C -0.138 4.138 25 C -0.070 4.070 26 N -0.385 5.385 27 O 0.074 5.926 28 H 0.101 0.899 29 H 0.097 0.903 30 H 0.104 0.896 31 H 0.130 0.870 32 H 0.131 0.869 33 H 0.117 0.883 34 H 0.121 0.879 35 H 0.273 0.727 36 H 0.131 0.869 37 H 0.113 0.887 38 H 0.131 0.869 39 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.068 -11.846 0.249 25.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.046 4.046 3 N -0.213 5.213 4 C -0.040 4.040 5 C -0.066 4.066 6 C -0.082 4.082 7 C -0.157 4.157 8 C 0.030 3.970 9 C -0.173 4.173 10 C -0.070 4.070 11 C -0.214 4.214 12 C 0.106 3.894 13 O -0.068 6.068 14 C -0.468 4.468 15 H 0.113 0.887 16 C -0.165 4.165 17 N -0.488 5.488 18 Si 0.768 3.232 19 H -0.197 1.197 20 H -0.201 1.201 21 H -0.190 1.190 22 C -0.256 4.256 23 C -0.065 4.065 24 C -0.156 4.156 25 C -0.090 4.090 26 N -0.092 5.092 27 O 0.015 5.985 28 H 0.119 0.881 29 H 0.116 0.884 30 H 0.123 0.877 31 H 0.148 0.852 32 H 0.149 0.851 33 H 0.135 0.865 34 H 0.139 0.861 35 H 0.083 0.917 36 H 0.148 0.852 37 H 0.131 0.869 38 H 0.149 0.851 39 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -21.793 -11.933 0.247 24.848 hybrid contribution -0.251 0.878 -0.077 0.917 sum -22.044 -11.055 0.170 24.661 Atomic orbital electron populations 1.20391 0.80220 1.05872 1.05425 1.28782 0.98912 0.80818 0.96064 1.71993 1.00035 1.28655 1.20611 1.23999 0.93001 0.87274 0.99733 1.17238 0.87267 0.92009 1.10045 1.21000 0.98913 0.91824 0.96450 1.21149 0.91139 1.00259 1.03168 1.19052 0.92751 0.92663 0.92580 1.18212 0.91230 0.92718 1.15134 1.20739 0.91068 0.98478 0.96684 1.20161 0.98478 0.91128 1.11591 1.19521 0.86752 0.91360 0.91720 1.83945 1.26410 1.20031 1.76424 1.21424 0.94980 0.78346 1.52055 0.88684 1.25363 0.94175 1.00801 0.96166 1.70029 0.97743 1.36560 1.44450 0.85665 0.78621 0.80098 0.78825 1.19703 1.20096 1.19016 1.21105 0.91836 1.00731 1.11953 1.20853 0.97353 0.92561 0.95699 1.21106 0.98094 0.93195 1.03209 1.20978 0.90907 0.99877 0.97245 1.74905 0.96849 1.15149 1.22340 1.85265 1.11486 1.35725 1.65977 0.88053 0.88435 0.87719 0.85201 0.85131 0.86504 0.86123 0.91708 0.85167 0.86888 0.85128 0.85666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.18 10.51 36.01 0.38 0.19 16 2 C 0.17 1.55 8.50 -12.99 -0.11 1.44 16 3 N -0.48 -5.79 11.25 -9.87 -0.11 -5.90 16 4 C 0.23 3.13 7.79 -156.09 -1.22 1.92 16 5 C -0.06 -0.89 5.88 -104.83 -0.62 -1.50 16 6 C -0.06 -0.82 9.68 -39.32 -0.38 -1.20 16 7 C -0.14 -1.92 9.41 -39.30 -0.37 -2.29 16 8 C 0.03 0.46 5.88 -104.85 -0.62 -0.16 16 9 C -0.17 -2.96 5.88 -104.86 -0.62 -3.58 16 10 C -0.05 -0.90 9.42 -39.27 -0.37 -1.27 16 11 C -0.19 -3.95 9.98 -39.44 -0.39 -4.34 16 12 C 0.16 3.77 6.65 -39.00 -0.26 3.51 16 13 O -0.17 -4.57 9.75 0.32 0.00 -4.57 16 14 C -0.39 -10.54 9.48 30.89 0.29 -10.24 16 15 H 0.10 2.34 5.19 -52.49 -0.27 2.07 16 16 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 17 N -0.85 -24.20 13.67 55.48 0.76 -23.44 16 18 Si 0.94 19.74 29.55 -169.99 -5.02 14.72 16 19 H -0.27 -5.55 7.11 56.52 0.40 -5.14 16 20 H -0.28 -5.66 7.11 56.52 0.40 -5.26 16 21 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 22 C -0.24 -4.94 9.15 -39.45 -0.36 -5.30 16 23 C -0.05 -0.83 9.42 -39.27 -0.37 -1.20 16 24 C -0.14 -1.91 9.41 -39.30 -0.37 -2.28 16 25 C -0.07 -0.94 9.68 -39.31 -0.38 -1.33 16 26 N -0.38 -5.12 11.85 30.98 0.37 -4.75 16 27 O 0.07 0.79 11.29 18.02 0.20 1.00 16 28 H 0.10 0.15 8.14 -51.93 -0.42 -0.27 16 29 H 0.10 0.09 8.14 -51.93 -0.42 -0.33 16 30 H 0.10 0.25 8.14 -51.93 -0.42 -0.18 16 31 H 0.13 1.55 7.86 -52.49 -0.41 1.14 16 32 H 0.13 1.60 6.18 -52.48 -0.32 1.28 16 33 H 0.12 1.68 6.19 -52.49 -0.32 1.35 16 34 H 0.12 2.34 8.06 -52.48 -0.42 1.92 16 35 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 36 H 0.13 2.68 5.62 -52.49 -0.30 2.39 16 37 H 0.11 1.68 6.19 -52.48 -0.32 1.36 16 38 H 0.13 1.59 6.18 -52.49 -0.32 1.27 16 39 H 0.13 1.54 7.86 -52.49 -0.41 1.13 16 LS Contribution 342.96 15.07 5.17 5.17 Total: -1.00 -31.91 342.96 -8.01 -39.92 By element: Atomic # 1 Polarization: 8.03 SS G_CDS: -3.52 Total: 4.51 kcal Atomic # 6 Polarization: -20.79 SS G_CDS: -5.86 Total: -26.65 kcal Atomic # 7 Polarization: -35.11 SS G_CDS: 1.01 Total: -34.10 kcal Atomic # 8 Polarization: -3.78 SS G_CDS: 0.21 Total: -3.57 kcal Atomic # 14 Polarization: 19.74 SS G_CDS: -5.02 Total: 14.72 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -31.91 -8.01 -39.92 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243590965.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.476 kcal (2) G-P(sol) polarization free energy of solvation -31.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.921 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds