Wall clock time and date at job start Tue Mar 31 2020 13:20:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.30959 * 126.43586 * 2 1 4 4 C 1.35250 * 105.57993 * 179.97438 * 3 2 1 5 5 C 1.48327 * 126.41684 * 180.02562 * 4 3 2 6 6 C 1.39456 * 119.99929 * 359.72430 * 5 4 3 7 7 C 1.37724 * 120.00506 * 179.72177 * 6 5 4 8 8 C 1.39505 * 119.99723 * 0.55520 * 7 6 5 9 9 C 1.48229 * 120.00791 * 179.69887 * 8 7 6 10 10 C 1.39482 * 120.05316 * 179.73861 * 9 8 7 11 11 C 1.37820 * 119.93851 * 179.78771 * 10 9 8 12 12 C 1.39020 * 120.05732 * 0.47029 * 11 10 9 13 13 O 1.35679 * 119.94254 * 179.76479 * 12 11 10 14 14 C 1.34813 * 117.00015 * 174.47309 * 13 12 11 15 15 H 1.07997 * 119.99977 * 5.05545 * 14 13 12 16 16 C 1.38655 * 120.00142 * 185.05222 * 14 13 12 17 17 N 1.31546 * 120.00074 * 0.02562 * 16 14 13 18 18 Si 1.86805 * 119.99753 * 179.97438 * 16 14 13 19 19 H 1.48502 * 109.46673 * 90.00422 * 18 16 14 20 20 H 1.48498 * 109.47068 * 209.99961 * 18 16 14 21 21 H 1.48496 * 109.47358 * 330.00405 * 18 16 14 22 22 C 1.39020 * 120.11083 * 359.78521 * 12 11 10 23 23 C 1.37810 * 120.05617 * 359.97438 * 22 12 11 24 24 C 1.39504 * 119.98652 * 359.71549 * 8 7 6 25 25 C 1.37727 * 119.99548 * 0.02562 * 24 8 7 26 26 N 1.30810 * 107.15928 * 359.97438 * 4 3 2 27 27 O 1.21285 * 110.08814 * 359.75056 * 26 4 3 28 28 H 1.09004 * 109.46748 * 89.99544 * 1 2 3 29 29 H 1.08994 * 109.47278 * 209.99888 * 1 2 3 30 30 H 1.09004 * 109.46674 * 330.00645 * 1 2 3 31 31 H 1.08002 * 119.99278 * 0.02562 * 6 5 4 32 32 H 1.08007 * 120.00245 * 180.24572 * 7 6 5 33 33 H 1.07994 * 120.03115 * 0.03116 * 10 9 8 34 34 H 1.08005 * 119.97060 * 180.23600 * 11 10 9 35 35 H 0.97000 * 120.00539 * 179.97438 * 17 16 14 36 36 H 1.07999 * 119.96750 * 179.97438 * 22 12 11 37 37 H 1.08003 * 120.02714 * 179.97438 * 23 22 12 38 38 H 1.07996 * 120.00222 * 179.97438 * 24 8 7 39 39 H 1.07995 * 119.99736 * 179.97438 * 25 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2849 1.0536 0.0000 4 6 3.5487 0.5721 0.0006 5 6 4.7965 1.3740 0.0014 6 6 4.7302 2.7670 -0.0043 7 6 5.8887 3.5117 0.0022 8 6 7.1287 2.8726 0.0027 9 6 8.3757 3.6739 0.0030 10 6 9.6160 3.0358 0.0090 11 6 10.7740 3.7832 0.0048 12 6 10.7066 5.1717 0.0045 13 8 11.8480 5.9052 0.0052 14 6 11.7167 7.2418 -0.1109 15 1 10.7339 7.6894 -0.1168 16 6 12.8435 8.0421 -0.2227 17 7 14.0407 7.4970 -0.2160 18 14 12.6614 9.8942 -0.3843 19 1 12.6618 10.5112 0.9665 20 1 13.7949 10.4358 -1.1762 21 1 11.3829 10.2078 -1.0714 22 6 9.4716 5.8100 0.0038 23 6 8.3108 5.0672 0.0030 24 6 7.1949 1.4791 0.0027 25 6 6.0361 0.7347 0.0016 26 7 3.4644 -0.7333 0.0015 27 8 2.3008 -1.0756 0.0064 28 1 -0.3633 0.0001 -1.0277 29 1 -0.3633 -0.8899 0.5138 30 1 -0.3633 0.8901 0.5138 31 1 3.7702 3.2617 -0.0088 32 1 5.8372 4.5905 0.0019 33 1 9.6690 1.9572 0.0130 34 1 11.7347 3.2896 0.0056 35 1 14.8290 8.0567 -0.2946 36 1 9.4219 6.8888 0.0040 37 1 7.3515 5.5636 0.0030 38 1 8.1547 0.9840 0.0027 39 1 6.0873 -0.3440 0.0011 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243590965.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:20:47 Heat of formation + Delta-G solvation = 70.405206 kcal Electronic energy + Delta-G solvation = -24187.496348 eV Core-core repulsion = 20449.223490 eV Total energy + Delta-G solvation = -3738.272859 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.110 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -46.59939 -41.06998 -40.15539 -38.18677 -36.86256 -34.83082 -34.32092 -32.73671 -32.53357 -31.55191 -29.77563 -29.33030 -27.43905 -25.66780 -24.76507 -24.00773 -22.92954 -22.35961 -21.56093 -19.88479 -19.25006 -19.12731 -18.75707 -17.62433 -17.04868 -16.47712 -16.33236 -15.87250 -15.59552 -15.25013 -15.23614 -15.18563 -14.73762 -14.40830 -14.36887 -14.16575 -14.10335 -13.90009 -13.56747 -13.30498 -13.18284 -12.98697 -12.80545 -12.65076 -12.42051 -12.25240 -12.19399 -12.12605 -11.84568 -11.25225 -11.15244 -10.84720 -10.02484 -9.98545 -9.87453 -8.57890 -8.50054 -6.17023 -0.58595 0.23434 0.39299 0.56501 0.76725 1.35682 1.41391 1.51904 1.53734 1.91772 2.16095 2.49258 2.64776 2.94878 2.95223 3.23264 3.43387 3.70104 3.77633 3.93863 3.95686 4.10110 4.19111 4.34558 4.39139 4.45415 4.49568 4.59884 4.67497 4.74718 4.77867 4.90137 4.98362 5.03634 5.08006 5.14698 5.22027 5.30701 5.37546 5.40902 5.55232 5.64647 5.82433 5.86625 5.98843 6.11455 6.94006 7.12063 7.71981 8.72067 Molecular weight = 322.11amu Principal moments of inertia in cm(-1) A = 0.037931 B = 0.001956 C = 0.001863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 738.010166 B =14309.848055 C =15027.053037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.192 3.808 3 N -0.505 5.505 4 C 0.207 3.793 5 C -0.060 4.060 6 C -0.066 4.066 7 C -0.129 4.129 8 C 0.002 3.998 9 C -0.145 4.145 10 C -0.049 4.049 11 C -0.203 4.203 12 C 0.123 3.877 13 O -0.224 6.224 14 C -0.415 4.415 15 H 0.106 0.894 16 C -0.021 4.021 17 N -0.916 5.916 18 Si 1.019 2.981 19 H -0.263 1.263 20 H -0.272 1.272 21 H -0.252 1.252 22 C -0.242 4.242 23 C -0.049 4.049 24 C -0.128 4.128 25 C -0.077 4.077 26 N -0.402 5.402 27 O 0.076 5.924 28 H 0.123 0.877 29 H 0.124 0.876 30 H 0.115 0.885 31 H 0.143 0.857 32 H 0.147 0.853 33 H 0.153 0.847 34 H 0.120 0.880 35 H 0.274 0.726 36 H 0.126 0.874 37 H 0.148 0.852 38 H 0.147 0.853 39 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.722 -13.089 0.173 30.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.028 4.028 3 N -0.239 5.239 4 C -0.062 4.062 5 C -0.062 4.062 6 C -0.085 4.085 7 C -0.147 4.147 8 C 0.002 3.998 9 C -0.146 4.146 10 C -0.067 4.067 11 C -0.222 4.222 12 C 0.072 3.928 13 O -0.130 6.130 14 C -0.491 4.491 15 H 0.123 0.877 16 C -0.219 4.219 17 N -0.554 5.554 18 Si 0.838 3.162 19 H -0.188 1.188 20 H -0.197 1.197 21 H -0.175 1.175 22 C -0.262 4.262 23 C -0.067 4.067 24 C -0.146 4.146 25 C -0.097 4.097 26 N -0.111 5.111 27 O 0.016 5.984 28 H 0.141 0.859 29 H 0.142 0.858 30 H 0.134 0.866 31 H 0.161 0.839 32 H 0.165 0.835 33 H 0.171 0.829 34 H 0.138 0.862 35 H 0.083 0.917 36 H 0.144 0.856 37 H 0.166 0.834 38 H 0.165 0.835 39 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -26.520 -13.213 0.176 29.630 hybrid contribution 0.581 0.763 -0.039 0.960 sum -25.939 -12.449 0.137 28.772 Atomic orbital electron populations 1.20813 0.76045 1.07702 1.07294 1.29886 1.00549 0.79406 0.92925 1.71993 0.99750 1.29885 1.22291 1.24090 0.93604 0.87611 1.00932 1.17538 0.87841 0.92569 1.08289 1.21132 0.99365 0.91641 0.96390 1.21346 0.90676 1.01193 1.01492 1.18987 0.92125 0.93105 0.95620 1.18567 0.92185 0.92806 1.11002 1.21115 0.90056 1.00179 0.95340 1.20405 0.99822 0.90405 1.11617 1.20073 0.86975 0.92476 0.93298 1.83924 1.28409 1.20440 1.80197 1.21879 0.95753 0.78861 1.52592 0.87701 1.26614 0.93578 1.06054 0.95679 1.70173 0.98700 1.38488 1.48017 0.84580 0.79071 0.73379 0.79172 1.18779 1.19662 1.17504 1.21218 0.92090 1.00885 1.11965 1.21190 0.97694 0.92957 0.94849 1.21297 0.99030 0.92728 1.01560 1.21106 0.90695 1.00471 0.97449 1.74884 0.98269 1.15181 1.22742 1.85231 1.11039 1.36203 1.65885 0.85857 0.85759 0.86631 0.83900 0.83513 0.82912 0.86213 0.91714 0.85624 0.83449 0.83499 0.84701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.11 10.51 71.24 0.75 0.63 16 2 C 0.19 2.81 8.50 88.36 0.75 3.56 16 3 N -0.51 -10.95 11.25 -302.45 -3.40 -14.35 16 4 C 0.21 5.22 7.79 137.24 1.07 6.29 16 5 C -0.06 -1.54 5.88 -20.00 -0.12 -1.66 16 6 C -0.07 -1.55 9.68 22.44 0.22 -1.33 16 7 C -0.13 -3.14 9.41 22.45 0.21 -2.92 16 8 C 0.00 0.07 5.88 -20.01 -0.12 -0.05 16 9 C -0.14 -4.65 5.88 -20.02 -0.12 -4.76 16 10 C -0.05 -1.63 9.42 22.47 0.21 -1.42 16 11 C -0.20 -8.44 9.98 22.36 0.22 -8.22 16 12 C 0.12 6.00 6.65 22.65 0.15 6.15 16 13 O -0.22 -13.21 9.75 -21.78 -0.21 -13.42 16 14 C -0.42 -23.62 9.48 67.92 0.64 -22.98 16 15 H 0.11 5.43 5.19 -2.91 -0.02 5.41 16 16 C -0.02 -1.17 5.49 84.84 0.47 -0.71 16 17 N -0.92 -55.35 13.67 21.61 0.30 -55.05 16 18 Si 1.02 41.92 29.55 68.60 2.03 43.95 16 19 H -0.26 -10.29 7.11 99.48 0.71 -9.58 16 20 H -0.27 -10.81 7.11 99.48 0.71 -10.11 16 21 H -0.25 -9.57 7.11 99.48 0.71 -8.86 16 22 C -0.24 -10.24 9.15 22.36 0.20 -10.04 16 23 C -0.05 -1.66 9.42 22.47 0.21 -1.45 16 24 C -0.13 -3.15 9.41 22.45 0.21 -2.93 16 25 C -0.08 -1.88 9.68 22.44 0.22 -1.66 16 26 N -0.40 -9.92 11.85 -59.06 -0.70 -10.62 16 27 O 0.08 1.45 11.29 74.54 0.84 2.29 16 28 H 0.12 -0.19 8.14 -2.38 -0.02 -0.21 16 29 H 0.12 -0.36 8.14 -2.39 -0.02 -0.38 16 30 H 0.12 0.07 8.14 -2.39 -0.02 0.05 16 31 H 0.14 2.99 7.86 -2.91 -0.02 2.97 16 32 H 0.15 3.02 6.18 -2.91 -0.02 3.01 16 33 H 0.15 3.91 6.19 -2.91 -0.02 3.89 16 34 H 0.12 4.87 8.06 -2.91 -0.02 4.84 16 35 H 0.27 15.14 8.31 -92.71 -0.77 14.37 16 36 H 0.13 5.32 5.62 -2.91 -0.02 5.31 16 37 H 0.15 3.91 6.19 -2.91 -0.02 3.89 16 38 H 0.15 3.04 6.18 -2.91 -0.02 3.02 16 39 H 0.14 3.01 7.86 -2.91 -0.02 2.98 16 Total: -1.00 -75.27 342.96 5.15 -70.11 By element: Atomic # 1 Polarization: 19.50 SS G_CDS: 1.12 Total: 20.62 kcal Atomic # 6 Polarization: -48.70 SS G_CDS: 5.18 Total: -43.51 kcal Atomic # 7 Polarization: -76.22 SS G_CDS: -3.81 Total: -80.03 kcal Atomic # 8 Polarization: -11.76 SS G_CDS: 0.63 Total: -11.13 kcal Atomic # 14 Polarization: 41.92 SS G_CDS: 2.03 Total: 43.95 kcal Total: -75.27 5.15 -70.11 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243590965.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.518 kcal (2) G-P(sol) polarization free energy of solvation -75.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.113 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds