Wall clock time and date at job start Tue Mar 31 2020 12:42:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38867 * 119.24589 * 2 1 4 4 C 1.36888 * 119.79445 * 180.23473 * 3 2 1 5 5 C 1.41117 * 118.39468 * 359.50370 * 4 3 2 6 6 C 1.40888 * 120.71795 * 180.27475 * 5 4 3 7 7 H 1.08001 * 120.00627 * 150.77393 * 6 5 4 8 8 C 1.40081 * 120.00110 * 330.76645 * 6 5 4 9 9 N 1.30768 * 120.00232 * 161.36990 * 8 6 5 10 10 Si 1.86801 * 119.99826 * 341.37124 * 8 6 5 11 11 H 1.48497 * 109.47110 * 95.22241 * 10 8 6 12 12 H 1.48492 * 109.47277 * 215.22682 * 10 8 6 13 13 H 1.48508 * 109.46980 * 335.22795 * 10 8 6 14 14 C 1.41863 * 118.56719 * 0.24968 * 5 4 3 15 15 C 1.47825 * 119.99620 * 180.02562 * 14 5 4 16 16 C 1.40097 * 120.56868 * 136.38590 * 15 14 5 17 17 C 1.38312 * 118.28240 * 180.02562 * 16 15 14 18 18 C 1.38392 * 119.31693 * 359.97438 * 17 16 15 19 19 C 1.50700 * 119.45202 * 179.97438 * 18 17 16 20 20 C 1.52999 * 109.46859 * 125.00072 * 19 18 17 21 21 F 1.39900 * 109.47557 * 60.00596 * 20 19 18 22 22 F 1.39907 * 109.46872 * 179.97438 * 20 19 18 23 23 F 1.39894 * 109.47522 * 299.99830 * 20 19 18 24 24 N 1.31935 * 121.10089 * 359.97438 * 18 17 16 25 25 C 1.31686 * 121.87837 * 359.74490 * 24 18 17 26 26 N 1.31747 * 119.24566 * 179.72511 * 2 1 3 27 27 H 1.09005 * 109.46809 * 270.26933 * 1 2 3 28 28 H 1.08999 * 109.47122 * 30.26847 * 1 2 3 29 29 H 1.09003 * 109.47119 * 150.27486 * 1 2 3 30 30 H 1.08003 * 120.10086 * 359.97438 * 3 2 1 31 31 H 1.08001 * 120.79966 * 179.77500 * 4 3 2 32 32 H 0.96997 * 120.00072 * 180.02562 * 9 8 6 33 33 H 1.07994 * 120.85617 * 0.02562 * 16 15 14 34 34 H 1.07994 * 120.34392 * 179.97438 * 17 16 15 35 35 H 1.09002 * 109.47341 * 245.00235 * 19 18 17 36 36 H 1.09000 * 109.47227 * 5.00747 * 19 18 17 37 37 H 1.08005 * 119.72191 * 180.29099 * 25 24 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1855 1.2117 0.0000 4 6 3.5543 1.2248 -0.0049 5 6 4.2373 -0.0101 0.0010 6 6 5.6455 -0.0537 0.0022 7 1 6.1597 -0.8842 0.4628 8 6 6.3787 0.9801 -0.5943 9 7 7.6405 1.1451 -0.2929 10 14 5.5541 2.1233 -1.8201 11 1 5.0848 3.3454 -1.1191 12 1 6.5269 2.5012 -2.8764 13 1 4.3948 1.4319 -2.4393 14 6 3.4753 -1.2067 0.0062 15 6 4.1582 -2.5177 0.0129 16 6 3.7122 -3.5491 0.8497 17 6 4.3865 -4.7563 0.8182 18 6 5.4692 -4.9059 -0.0307 19 6 6.2064 -6.2197 -0.0669 20 6 6.2486 -6.7413 -1.5046 21 9 6.9084 -5.8139 -2.3181 22 9 6.9335 -7.9608 -1.5384 23 9 4.9431 -6.9262 -1.9722 24 7 5.8668 -3.9174 -0.8088 25 6 5.2549 -2.7514 -0.8193 26 7 2.1507 -1.1495 0.0055 27 1 -0.3633 0.0048 1.0277 28 1 -0.3633 0.8876 -0.5180 29 1 -0.3633 -0.8925 -0.5096 30 1 1.6349 2.1408 -0.0004 31 1 4.0984 2.1577 -0.0086 32 1 8.1481 1.8612 -0.7056 33 1 2.8639 -3.4052 1.5023 34 1 4.0714 -5.5738 1.4496 35 1 7.2237 -6.0758 0.2974 36 1 5.6924 -6.9424 0.5668 37 1 5.6070 -1.9677 -1.4738 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244291610.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:42:19 Heat of formation + Delta-G solvation = -120.611624 kcal Electronic energy + Delta-G solvation = -26509.103802 eV Core-core repulsion = 22220.691092 eV Total energy + Delta-G solvation = -4288.412710 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.099 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -50.97829 -48.52634 -48.41822 -41.36940 -40.24334 -36.18871 -35.13834 -33.59386 -33.47259 -32.54420 -30.14162 -29.43853 -26.28907 -25.16399 -24.47231 -23.66740 -22.66844 -21.98194 -19.51348 -19.44346 -19.37636 -18.46345 -17.81411 -17.65265 -16.98433 -16.66494 -16.22960 -15.50312 -15.46315 -15.36361 -15.31601 -15.04412 -14.90661 -14.81626 -14.62643 -14.60283 -14.56716 -14.06331 -13.91639 -13.72190 -13.44347 -13.40172 -13.06003 -12.97487 -12.89009 -12.69272 -12.51858 -12.11378 -11.84575 -11.37606 -10.84130 -10.48233 -10.34156 -10.09701 -9.88534 -9.25433 -9.02481 -6.54989 -0.16459 0.39355 0.63212 0.84920 1.19934 1.34593 1.41913 1.89639 2.01710 2.52060 2.73844 2.87833 3.07124 3.21024 3.38802 3.48222 3.66621 3.86891 4.11461 4.13975 4.18521 4.26216 4.43408 4.45320 4.51117 4.65751 4.70360 4.85047 4.87076 4.93711 4.98588 5.10594 5.21924 5.34006 5.41975 5.58672 5.62104 5.83389 5.92597 6.18474 6.48955 6.60809 7.03255 7.52835 8.02417 Molecular weight = 322.10amu Principal moments of inertia in cm(-1) A = 0.013743 B = 0.004283 C = 0.003533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2036.929262 B = 6536.351324 C = 7922.482181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.012 4.012 3 C -0.116 4.116 4 C -0.213 4.213 5 C 0.042 3.958 6 C -0.444 4.444 7 H 0.070 0.930 8 C 0.055 3.945 9 N -0.821 5.821 10 Si 0.955 3.045 11 H -0.249 1.249 12 H -0.274 1.274 13 H -0.260 1.260 14 C 0.019 3.981 15 C -0.047 4.047 16 C -0.072 4.072 17 C -0.141 4.141 18 C 0.078 3.922 19 C -0.098 4.098 20 C 0.455 3.545 21 F -0.186 7.186 22 F -0.184 7.184 23 F -0.194 7.194 24 N -0.491 5.491 25 C 0.113 3.887 26 N -0.453 5.453 27 H 0.071 0.929 28 H 0.081 0.919 29 H 0.060 0.940 30 H 0.145 0.855 31 H 0.115 0.885 32 H 0.299 0.701 33 H 0.143 0.857 34 H 0.181 0.819 35 H 0.138 0.862 36 H 0.165 0.835 37 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.515 -9.313 1.544 10.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.152 4.152 3 C -0.136 4.136 4 C -0.238 4.238 5 C 0.037 3.963 6 C -0.473 4.473 7 H 0.088 0.912 8 C -0.164 4.164 9 N -0.445 5.445 10 Si 0.778 3.222 11 H -0.174 1.174 12 H -0.200 1.200 13 H -0.184 1.184 14 C -0.120 4.120 15 C -0.050 4.050 16 C -0.098 4.098 17 C -0.161 4.161 18 C -0.060 4.060 19 C -0.136 4.136 20 C 0.401 3.599 21 F -0.168 7.168 22 F -0.165 7.165 23 F -0.175 7.175 24 N -0.200 5.200 25 C -0.046 4.046 26 N -0.161 5.161 27 H 0.090 0.910 28 H 0.100 0.900 29 H 0.079 0.921 30 H 0.162 0.838 31 H 0.133 0.867 32 H 0.110 0.890 33 H 0.161 0.839 34 H 0.198 0.802 35 H 0.156 0.844 36 H 0.182 0.818 37 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -4.976 -10.116 0.971 11.315 hybrid contribution 0.203 1.755 -0.239 1.783 sum -4.773 -8.361 0.733 9.655 Atomic orbital electron populations 1.20404 0.87400 1.02737 1.02410 1.21200 0.97570 0.87770 1.08689 1.21631 0.94126 0.99495 0.98345 1.21337 0.95279 0.97057 1.10173 1.18563 0.94181 0.92221 0.91286 1.19326 0.90073 1.06144 1.31722 0.91236 1.26795 0.95078 0.97266 0.97257 1.69664 1.10164 1.28949 1.35678 0.85642 0.78935 0.79117 0.78508 1.17364 1.19986 1.18371 1.19517 0.88754 0.91401 1.12311 1.19506 0.95728 0.93050 0.96712 1.21847 0.99014 0.92201 0.96745 1.22117 0.95090 0.98710 1.00140 1.21068 0.95274 0.94396 0.95301 1.21840 1.06553 0.94166 0.91060 1.20634 0.73064 0.75104 0.91108 1.93230 1.81121 1.66218 1.76226 1.93178 1.80095 1.46090 1.97154 1.93162 1.38230 1.95283 1.90855 1.67418 1.29862 1.00596 1.22107 1.22734 0.91934 0.93227 0.96656 1.66995 1.08951 1.30423 1.09730 0.91005 0.89985 0.92081 0.83765 0.86735 0.88989 0.83935 0.80182 0.84361 0.81759 0.84168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.03 10.15 71.24 0.72 -1.31 16 2 C -0.01 -0.45 6.79 42.72 0.29 -0.16 16 3 C -0.12 -4.49 9.65 22.10 0.21 -4.28 16 4 C -0.21 -9.47 7.26 22.66 0.16 -9.31 16 5 C 0.04 2.07 5.11 -21.03 -0.11 1.96 16 6 C -0.44 -23.07 7.24 23.37 0.17 -22.90 16 7 H 0.07 3.94 6.72 -2.91 -0.02 3.92 16 8 C 0.05 2.72 5.42 85.30 0.46 3.19 16 9 N -0.82 -41.91 13.92 21.85 0.30 -41.61 16 10 Si 0.95 39.83 24.54 68.60 1.68 41.51 16 11 H -0.25 -9.56 6.69 99.48 0.67 -8.89 16 12 H -0.27 -10.83 7.11 99.48 0.71 -10.13 16 13 H -0.26 -11.38 6.88 99.48 0.68 -10.69 16 14 C 0.02 0.91 6.45 42.47 0.27 1.18 16 15 C -0.05 -2.02 5.26 -19.95 -0.10 -2.13 16 16 C -0.07 -2.49 9.83 22.74 0.22 -2.27 16 17 C -0.14 -3.87 9.69 22.32 0.22 -3.66 16 18 C 0.08 2.36 5.92 42.58 0.25 2.61 16 19 C -0.10 -2.02 5.69 29.85 0.17 -1.85 16 20 C 0.46 11.61 3.15 71.98 0.23 11.83 16 21 F -0.19 -6.07 15.95 44.97 0.72 -5.35 16 22 F -0.18 -4.20 17.32 44.97 0.78 -3.42 16 23 F -0.19 -5.43 17.02 44.97 0.77 -4.66 16 24 N -0.49 -19.32 8.88 -182.69 -1.62 -20.94 16 25 C 0.11 4.97 9.06 85.05 0.77 5.74 16 26 N -0.45 -19.79 10.07 -171.13 -1.72 -21.51 16 27 H 0.07 1.79 8.14 -2.38 -0.02 1.78 16 28 H 0.08 1.88 8.07 -2.39 -0.02 1.86 16 29 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 30 H 0.14 4.37 8.06 -2.91 -0.02 4.35 16 31 H 0.12 4.93 4.77 -2.91 -0.01 4.92 16 32 H 0.30 13.68 8.29 -92.71 -0.77 12.91 16 33 H 0.14 4.58 8.06 -2.91 -0.02 4.55 16 34 H 0.18 3.03 7.94 -2.91 -0.02 3.01 16 35 H 0.14 2.46 8.14 -2.39 -0.02 2.44 16 36 H 0.16 1.85 7.86 -2.39 -0.02 1.83 16 37 H 0.14 6.77 6.78 -2.91 -0.02 6.75 16 Total: -1.00 -62.95 325.98 5.91 -57.04 By element: Atomic # 1 Polarization: 19.22 SS G_CDS: 1.07 Total: 20.29 kcal Atomic # 6 Polarization: -25.28 SS G_CDS: 3.94 Total: -21.34 kcal Atomic # 7 Polarization: -81.03 SS G_CDS: -3.04 Total: -84.07 kcal Atomic # 9 Polarization: -15.70 SS G_CDS: 2.26 Total: -13.44 kcal Atomic # 14 Polarization: 39.83 SS G_CDS: 1.68 Total: 41.51 kcal Total: -62.95 5.91 -57.04 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244291610.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.576 kcal (2) G-P(sol) polarization free energy of solvation -62.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.036 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds