Wall clock time and date at job start Tue Mar 31 2020 13:49:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47185 * 2 1 4 4 C 1.52998 * 109.47185 * 179.97438 * 3 2 1 5 5 N 1.46502 * 109.47290 * 179.97438 * 4 3 2 6 6 C 1.46499 * 120.00148 * 275.00338 * 5 4 3 7 7 C 1.50703 * 109.46868 * 276.29140 * 6 5 4 8 8 H 1.08000 * 120.00464 * 0.02562 * 7 6 5 9 9 C 1.37876 * 119.99897 * 179.97438 * 7 6 5 10 10 N 1.31514 * 119.99783 * 0.02562 * 9 7 6 11 11 Si 1.86796 * 120.00273 * 180.02562 * 9 7 6 12 12 H 1.48496 * 109.47217 * 89.99909 * 11 9 7 13 13 H 1.48505 * 109.47200 * 210.00483 * 11 9 7 14 14 H 1.48506 * 109.47046 * 329.99924 * 11 9 7 15 15 S 1.65603 * 119.99495 * 95.00183 * 5 4 3 16 16 O 1.42102 * 106.39869 * 151.92939 * 15 5 4 17 17 O 1.42096 * 106.40536 * 19.01017 * 15 5 4 18 18 C 1.76198 * 107.21808 * 265.46595 * 15 5 4 19 19 C 1.37974 * 120.07749 * 344.82555 * 18 15 5 20 20 C 1.38334 * 120.15065 * 179.97438 * 19 18 15 21 21 C 1.38382 * 120.30808 * 359.97438 * 20 19 18 22 22 C 1.37929 * 120.15124 * 0.02562 * 21 20 19 23 23 C 1.39613 * 120.07965 * 164.77684 * 18 15 5 24 24 C 1.43203 * 120.14722 * 0.05230 * 23 18 15 25 25 N 7.43963 * 116.60154 * 47.77374 * 2 1 3 26 26 H 1.09005 * 109.47019 * 299.99840 * 1 2 3 27 27 H 1.09003 * 109.46995 * 59.99332 * 1 2 3 28 28 H 1.08994 * 109.46994 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47401 * 240.00318 * 2 1 3 30 30 H 1.08999 * 109.47564 * 120.00213 * 2 1 3 31 31 H 1.09005 * 109.47012 * 60.00155 * 3 2 1 32 32 H 1.09000 * 109.47134 * 299.99751 * 3 2 1 33 33 H 1.09005 * 109.47019 * 60.00159 * 4 3 2 34 34 H 1.08999 * 109.47564 * 300.00213 * 4 3 2 35 35 H 1.08997 * 109.47328 * 36.29333 * 6 5 4 36 36 H 1.08996 * 109.46931 * 156.29708 * 6 5 4 37 37 H 0.97001 * 119.99895 * 179.97438 * 10 9 7 38 38 H 1.08000 * 119.92387 * 359.97438 * 19 18 15 39 39 H 1.08005 * 119.84842 * 180.02562 * 20 19 18 40 40 H 1.08001 * 119.92997 * 180.02562 * 21 20 19 41 41 H 1.08001 * 120.07595 * 179.72312 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0584 2.8237 0.0000 6 6 4.1988 3.5505 -1.2642 7 6 5.5221 3.2057 -1.8975 8 1 6.1914 2.5140 -1.4075 9 6 5.8779 3.7724 -3.1030 10 7 5.0627 4.6142 -3.6999 11 14 7.5178 3.3445 -3.8884 12 1 7.3492 2.1656 -4.7755 13 1 8.0008 4.4998 -4.6868 14 1 8.5073 3.0280 -2.8272 15 16 4.4516 3.5634 1.4285 16 8 5.4475 4.5289 1.1195 17 8 4.6446 2.5246 2.3786 18 6 3.0327 4.4642 1.9574 19 6 2.0021 4.7120 1.0741 20 6 0.8871 5.4186 1.4878 21 6 0.7966 5.8811 2.7889 22 6 1.8195 5.6405 3.6824 23 6 2.9480 4.9280 3.2715 24 6 4.0138 4.6745 4.1937 25 7 4.8613 4.4706 4.9258 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5140 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 1.6767 1.9563 0.8900 32 1 1.6767 1.9563 -0.8900 33 1 3.9337 0.9285 -0.8892 34 1 3.9330 0.9288 0.8908 35 1 3.3893 3.2683 -1.9374 36 1 4.1557 4.6228 -1.0735 37 1 5.3132 5.0132 -4.5478 38 1 2.0661 4.3535 0.0573 39 1 0.0831 5.6094 0.7924 40 1 -0.0769 6.4317 3.1055 41 1 1.7495 6.0059 4.6963 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001258238110.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:49:56 Heat of formation + Delta-G solvation = -24.054315 kcal Electronic energy + Delta-G solvation = -25616.516368 eV Core-core repulsion = 22009.591388 eV Total energy + Delta-G solvation = -3606.924980 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 322.114 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -39.55449 -36.92077 -36.75939 -36.34500 -35.29079 -34.15027 -32.43254 -31.68178 -31.48103 -28.93107 -26.60135 -24.36308 -23.47192 -23.31412 -22.15950 -20.92341 -19.49392 -18.33144 -17.38844 -16.80491 -16.36163 -15.79383 -15.49900 -15.26531 -15.01457 -14.59768 -14.48116 -14.15179 -13.86114 -13.64897 -13.35227 -13.01252 -12.86653 -12.67078 -12.55030 -12.44639 -12.31635 -11.94476 -11.69581 -11.61697 -11.50737 -11.39995 -11.21688 -10.98054 -10.87929 -10.72450 -10.62544 -10.46915 -10.31102 -10.00765 -9.77916 -9.54941 -9.19741 -8.49367 -8.20743 -6.11634 -4.15088 0.33730 0.80863 0.88509 2.46508 2.75486 3.29870 3.32368 3.37034 3.43970 3.54386 3.62279 4.06339 4.41458 4.56880 4.67217 4.92473 4.96905 5.08929 5.10158 5.18718 5.24199 5.25223 5.32492 5.45004 5.56896 5.73224 5.81464 5.84626 5.85161 5.87724 5.95047 6.06307 6.14908 6.24586 6.29648 6.49815 6.55669 6.58173 7.07016 7.26297 7.28455 7.47016 7.86286 8.12874 8.87124 9.50559 10.97131 Molecular weight = 322.11amu Principal moments of inertia in cm(-1) A = 0.010662 B = 0.005437 C = 0.004528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2625.397719 B = 5148.734509 C = 6182.656352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.123 4.123 3 C -0.145 4.145 4 C 0.118 3.882 5 N -0.977 5.977 6 C 0.251 3.749 7 C -0.528 4.528 8 H 0.062 0.938 9 C 0.064 3.936 10 N -0.895 5.895 11 Si 0.896 3.104 12 H -0.280 1.280 13 H -0.285 1.285 14 H -0.272 1.272 15 S 2.670 3.330 16 O -0.931 6.931 17 O -0.964 6.964 18 C -0.627 4.627 19 C -0.025 4.025 20 C -0.108 4.108 21 C -0.078 4.078 22 C -0.090 4.090 23 C 0.067 3.933 24 C 0.219 3.781 25 N -0.370 5.370 26 H 0.051 0.949 27 H 0.054 0.946 28 H 0.050 0.950 29 H 0.065 0.935 30 H 0.062 0.938 31 H 0.057 0.943 32 H 0.073 0.927 33 H 0.092 0.908 34 H 0.081 0.919 35 H 0.042 0.958 36 H 0.040 0.960 37 H 0.264 0.736 38 H 0.152 0.848 39 H 0.140 0.860 40 H 0.139 0.861 41 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.698 -1.291 8.631 17.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.161 4.161 3 C -0.184 4.184 4 C -0.008 4.008 5 N -0.818 5.818 6 C 0.129 3.871 7 C -0.568 4.568 8 H 0.081 0.919 9 C -0.139 4.139 10 N -0.534 5.534 11 Si 0.724 3.276 12 H -0.206 1.206 13 H -0.210 1.210 14 H -0.196 1.196 15 S 2.756 3.244 16 O -0.921 6.921 17 O -0.954 6.954 18 C -0.711 4.711 19 C -0.044 4.044 20 C -0.127 4.127 21 C -0.096 4.096 22 C -0.111 4.111 23 C 0.062 3.938 24 C -0.097 4.097 25 N -0.044 5.044 26 H 0.070 0.930 27 H 0.073 0.927 28 H 0.069 0.931 29 H 0.084 0.916 30 H 0.080 0.920 31 H 0.075 0.925 32 H 0.091 0.909 33 H 0.110 0.890 34 H 0.099 0.901 35 H 0.060 0.940 36 H 0.058 0.942 37 H 0.074 0.926 38 H 0.169 0.831 39 H 0.158 0.842 40 H 0.157 0.843 41 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -12.622 -1.495 10.044 16.200 hybrid contribution -0.226 0.306 -0.889 0.967 sum -12.848 -1.189 9.155 15.821 Atomic orbital electron populations 1.21761 0.96142 1.01208 1.01684 1.21449 0.95567 0.96783 1.02285 1.22164 0.96774 0.97096 1.02357 1.21342 0.92672 0.82549 1.04205 1.57415 1.80998 1.21374 1.21997 1.19221 0.98094 0.91171 0.78579 1.21441 1.02952 1.27119 1.05268 0.91941 1.24904 0.97343 0.94731 0.96887 1.69900 1.36481 1.29668 1.17394 0.86516 0.83886 0.77935 0.79285 1.20565 1.21040 1.19646 1.02907 0.74213 0.74105 0.73187 1.93661 1.52990 1.62045 1.83358 1.93549 1.84688 1.55801 1.61389 1.31718 1.22336 1.16636 1.00444 1.21100 0.91032 0.93207 0.99065 1.21557 0.98181 0.96634 0.96344 1.21338 0.98008 0.97068 0.93222 1.21250 0.92086 0.97160 1.00620 1.15296 0.90761 0.98960 0.88739 1.25876 0.93992 0.94957 0.94888 1.81305 1.08301 1.06386 1.08457 0.93001 0.92699 0.93088 0.91580 0.91954 0.92461 0.90868 0.88979 0.90089 0.94008 0.94250 0.92620 0.83075 0.84228 0.84271 0.84222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.43 9.91 37.16 0.37 -1.06 16 2 C -0.12 -1.35 5.93 -26.73 -0.16 -1.51 16 3 C -0.14 -1.87 5.54 -26.73 -0.15 -2.02 16 4 C 0.12 1.92 5.66 -4.04 -0.02 1.90 16 5 N -0.98 -19.10 2.00 -115.66 -0.23 -19.34 16 6 C 0.25 5.78 4.16 -5.19 -0.02 5.76 16 7 C -0.53 -14.18 9.37 -34.44 -0.32 -14.51 16 8 H 0.06 1.69 7.81 -52.49 -0.41 1.28 16 9 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 10 N -0.90 -24.97 13.29 55.43 0.74 -24.24 16 11 Si 0.90 21.34 29.54 -169.99 -5.02 16.31 16 12 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 13 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 14 H -0.27 -6.54 7.11 56.52 0.40 -6.13 16 15 S 2.67 54.43 4.83 -107.50 -0.52 53.91 16 16 O -0.93 -22.84 17.13 -57.17 -0.98 -23.82 16 17 O -0.96 -20.44 15.42 -57.17 -0.88 -21.32 16 18 C -0.63 -10.07 5.87 -39.17 -0.23 -10.30 16 19 C -0.03 -0.34 9.03 -39.64 -0.36 -0.69 16 20 C -0.11 -1.04 10.04 -39.49 -0.40 -1.44 16 21 C -0.08 -0.66 10.03 -39.64 -0.40 -1.05 16 22 C -0.09 -0.93 9.76 -39.17 -0.38 -1.31 16 23 C 0.07 0.98 5.73 -106.93 -0.61 0.37 16 24 C 0.22 3.74 13.43 -22.39 -0.30 3.44 16 25 N -0.37 -6.91 18.55 41.93 0.78 -6.13 16 26 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 28 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 31 H 0.06 0.70 7.61 -51.93 -0.40 0.30 16 32 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.09 1.51 8.11 -51.93 -0.42 1.09 16 34 H 0.08 1.29 6.88 -51.93 -0.36 0.93 16 35 H 0.04 0.94 8.11 -51.93 -0.42 0.52 16 36 H 0.04 0.96 7.69 -51.93 -0.40 0.56 16 37 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 38 H 0.15 1.98 6.50 -52.49 -0.34 1.64 16 39 H 0.14 0.93 8.06 -52.48 -0.42 0.51 16 40 H 0.14 0.66 8.06 -52.49 -0.42 0.23 16 41 H 0.14 1.02 8.06 -52.49 -0.42 0.60 16 LS Contribution 366.03 15.07 5.52 5.52 Total: -1.00 -33.47 366.03 -9.37 -42.84 By element: Atomic # 1 Polarization: 2.71 SS G_CDS: -5.68 Total: -2.97 kcal Atomic # 6 Polarization: -17.69 SS G_CDS: -3.08 Total: -20.77 kcal Atomic # 7 Polarization: -50.99 SS G_CDS: 1.28 Total: -49.70 kcal Atomic # 8 Polarization: -43.28 SS G_CDS: -1.86 Total: -45.14 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.31 kcal Atomic # 16 Polarization: 54.43 SS G_CDS: -0.52 Total: 53.91 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -33.47 -9.37 -42.84 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001258238110.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.787 kcal (2) G-P(sol) polarization free energy of solvation -33.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds