Wall clock time and date at job start Tue Mar 31 2020 13:09:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.33395 * 122.53918 * 2 1 4 4 S 1.75883 * 109.59398 * 180.24237 * 3 2 1 5 5 C 1.75881 * 90.96944 * 359.73339 * 4 3 2 6 6 C 1.33390 * 109.59494 * 359.97438 * 5 4 3 7 7 C 1.50702 * 122.53927 * 180.02562 * 6 5 4 8 8 N 1.46505 * 109.46910 * 260.02231 * 7 6 5 9 9 C 1.34768 * 120.00082 * 179.97438 * 8 7 6 10 10 O 1.21345 * 120.00101 * 0.02562 * 9 8 7 11 11 C 1.49453 * 120.00060 * 179.97438 * 9 8 7 12 12 O 1.21347 * 119.99738 * 5.09600 * 11 9 8 13 13 N 1.34782 * 120.00141 * 185.08842 * 11 9 8 14 14 C 1.46497 * 119.99894 * 185.03768 * 13 11 9 15 15 C 1.53005 * 109.46780 * 184.77988 * 14 13 11 16 16 C 1.50694 * 115.55017 * 294.81935 * 15 14 13 17 17 H 1.08003 * 119.99667 * 95.20821 * 16 15 14 18 18 C 1.37878 * 120.00569 * 274.92361 * 16 15 14 19 19 N 1.31513 * 119.99163 * 355.42361 * 18 16 15 20 20 Si 1.86794 * 120.00501 * 175.42139 * 18 16 15 21 21 H 1.48506 * 109.47138 * 59.99993 * 20 18 16 22 22 H 1.48497 * 109.47408 * 180.02562 * 20 18 16 23 23 H 1.48504 * 109.47174 * 300.00591 * 20 18 16 24 24 C 1.53002 * 117.49623 * 80.49302 * 15 14 13 25 25 C 1.53002 * 117.49534 * 149.14978 * 15 14 13 26 26 H 1.08998 * 109.46919 * 270.25118 * 1 2 3 27 27 H 1.09000 * 109.47554 * 30.25249 * 1 2 3 28 28 H 1.08996 * 109.47425 * 150.25324 * 1 2 3 29 29 H 1.08000 * 125.19989 * 359.97018 * 3 2 1 30 30 H 1.08004 * 125.20349 * 179.97438 * 5 4 3 31 31 H 1.08996 * 109.47368 * 140.02677 * 7 6 5 32 32 H 1.08999 * 109.47544 * 20.01858 * 7 6 5 33 33 H 0.97003 * 120.00007 * 0.02562 * 8 7 6 34 34 H 0.97004 * 119.99403 * 5.04265 * 13 11 9 35 35 H 1.09003 * 109.46616 * 64.78885 * 14 13 11 36 36 H 1.08993 * 109.47729 * 304.78355 * 14 13 11 37 37 H 0.97009 * 119.99393 * 184.99658 * 19 18 16 38 38 H 1.08995 * 117.49715 * 214.99983 * 24 15 14 39 39 H 1.09003 * 117.49834 * 0.02562 * 24 15 14 40 40 H 1.09005 * 117.49794 * 359.97438 * 25 15 14 41 41 H 1.08999 * 117.49412 * 144.97246 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2244 1.1246 0.0000 4 16 3.9385 0.7306 -0.0070 5 6 3.5736 -0.9900 -0.0014 6 6 2.2515 -1.1668 0.0056 7 6 1.6166 -2.5336 0.0123 8 7 1.1870 -2.8791 -1.3450 9 6 0.5893 -4.0636 -1.5816 10 8 0.4065 -4.8437 -0.6704 11 6 0.1506 -4.4158 -2.9662 12 8 0.4144 -3.6777 -3.8925 13 7 -0.5380 -5.5534 -3.1861 14 6 -0.8722 -5.9545 -4.5549 15 6 -1.7505 -7.2068 -4.5193 16 6 -1.0920 -8.4471 -3.9727 17 1 -1.2147 -8.7097 -2.9322 18 6 -0.3379 -9.2500 -4.8019 19 7 -0.2666 -8.9838 -6.0879 20 14 0.5827 -10.7155 -4.0991 21 1 -0.3839 -11.6536 -3.4735 22 1 1.3130 -11.4106 -5.1893 23 1 1.5511 -10.2472 -3.0753 24 6 -3.2420 -7.0157 -4.2370 25 6 -2.7707 -7.3863 -5.6454 26 1 -0.3633 0.0045 1.0277 27 1 -0.3634 0.8877 -0.5177 28 1 -0.3634 -0.8922 -0.5099 29 1 1.8153 2.1241 -0.0005 30 1 4.3077 -1.7822 -0.0034 31 1 0.7526 -2.5295 0.6768 32 1 2.3408 -3.2690 0.3624 33 1 1.3335 -2.2556 -2.0736 34 1 -0.8123 -6.1065 -2.4379 35 1 0.0443 -6.1690 -5.1045 36 1 -1.4115 -5.1463 -5.0489 37 1 0.2037 -9.5886 -6.6830 38 1 -3.7470 -7.7872 -3.6558 39 1 -3.5976 -5.9978 -4.0769 40 1 -2.8164 -6.6120 -6.4113 41 1 -2.9652 -8.4016 -5.9910 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001261158402.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:09:50 Heat of formation + Delta-G solvation = -36.328752 kcal Electronic energy + Delta-G solvation = -24033.102922 eV Core-core repulsion = 20425.645683 eV Total energy + Delta-G solvation = -3607.457239 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 322.114 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.69718 -40.13038 -39.30001 -38.45477 -35.94217 -34.83320 -33.95740 -32.16212 -29.80220 -28.65381 -27.49699 -26.85628 -24.40986 -23.14589 -22.88314 -21.43689 -21.22550 -19.90133 -18.80661 -18.60235 -18.01990 -17.84110 -17.06761 -16.68905 -16.52113 -16.30350 -15.76353 -15.70913 -15.16258 -14.90295 -14.70064 -14.39852 -14.30664 -13.93721 -13.69071 -13.50277 -13.46080 -12.98385 -12.95410 -12.84013 -12.81689 -12.75841 -12.53914 -12.39081 -12.00814 -11.72362 -11.42796 -10.96651 -10.80182 -10.45096 -10.35871 -10.12200 -9.95936 -9.71713 -9.26494 -8.10389 -6.24124 -0.01478 0.37920 0.70060 1.00831 1.22498 1.42496 1.45061 1.50802 1.78104 2.17409 2.42140 2.80672 3.17206 3.44359 3.61072 3.75696 3.89814 4.19757 4.20552 4.38874 4.52184 4.53095 4.56081 4.63212 4.68908 4.69465 4.81115 4.92545 5.02934 5.04559 5.07198 5.14597 5.29164 5.35500 5.49532 5.52231 5.53622 5.69074 5.77419 5.99032 6.36134 6.45080 6.76145 6.83143 7.00324 7.45605 8.96009 Molecular weight = 322.11amu Principal moments of inertia in cm(-1) A = 0.020454 B = 0.002548 C = 0.002415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1368.572075 B =10984.527335 C =11593.248009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C -0.102 4.102 3 C -0.221 4.221 4 S 0.121 5.879 5 C -0.193 4.193 6 C -0.133 4.133 7 C 0.181 3.819 8 N -0.683 5.683 9 C 0.516 3.484 10 O -0.539 6.539 11 C 0.496 3.504 12 O -0.557 6.557 13 N -0.669 5.669 14 C 0.175 3.825 15 C -0.002 4.002 16 C -0.510 4.510 17 H 0.058 0.942 18 C 0.028 3.972 19 N -0.903 5.903 20 Si 0.946 3.054 21 H -0.270 1.270 22 H -0.287 1.287 23 H -0.276 1.276 24 C -0.180 4.180 25 C -0.146 4.146 26 H 0.080 0.920 27 H 0.078 0.922 28 H 0.059 0.941 29 H 0.184 0.816 30 H 0.179 0.821 31 H 0.087 0.913 32 H 0.083 0.917 33 H 0.417 0.583 34 H 0.415 0.585 35 H 0.039 0.961 36 H 0.056 0.944 37 H 0.260 0.740 38 H 0.082 0.918 39 H 0.090 0.910 40 H 0.075 0.925 41 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.888 20.353 13.238 24.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.114 4.114 3 C -0.356 4.356 4 S 0.387 5.613 5 C -0.330 4.330 6 C -0.146 4.146 7 C 0.057 3.943 8 N -0.336 5.336 9 C 0.296 3.704 10 O -0.416 6.416 11 C 0.277 3.723 12 O -0.437 6.437 13 N -0.319 5.319 14 C 0.051 3.949 15 C -0.003 4.003 16 C -0.547 4.547 17 H 0.076 0.924 18 C -0.173 4.173 19 N -0.541 5.541 20 Si 0.772 3.228 21 H -0.196 1.196 22 H -0.213 1.213 23 H -0.201 1.201 24 C -0.218 4.218 25 C -0.184 4.184 26 H 0.098 0.902 27 H 0.097 0.903 28 H 0.078 0.922 29 H 0.201 0.799 30 H 0.197 0.803 31 H 0.105 0.895 32 H 0.101 0.899 33 H 0.254 0.746 34 H 0.252 0.748 35 H 0.058 0.942 36 H 0.074 0.926 37 H 0.069 0.931 38 H 0.101 0.899 39 H 0.109 0.891 40 H 0.093 0.907 41 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 6.471 21.155 13.065 25.692 hybrid contribution -0.665 -1.906 -0.138 2.024 sum 5.805 19.249 12.927 23.903 Atomic orbital electron populations 1.20594 0.88938 1.03171 1.03100 1.18957 0.98195 0.91427 1.02822 1.25716 0.95820 1.03091 1.11012 1.84292 1.06232 0.99053 1.71739 1.25874 0.99200 1.00696 1.07216 1.18727 0.93132 0.94978 1.07774 1.20045 0.99710 0.92171 0.82375 1.45787 1.58177 1.17332 1.12321 1.19958 0.79249 0.82876 0.88268 1.90760 1.55505 1.49835 1.45481 1.20352 0.79956 0.82472 0.89567 1.90702 1.56842 1.50766 1.45341 1.45799 1.52616 1.22367 1.11087 1.20827 0.98312 0.95048 0.80665 1.19059 0.87090 0.93042 1.01119 1.20641 1.30488 1.07703 0.95890 0.92362 1.25634 0.96566 0.99903 0.95177 1.70083 1.42883 1.37530 1.03572 0.85809 0.79104 0.79966 0.77932 1.19559 1.21303 1.20094 1.23023 0.98586 1.00858 0.99283 1.22397 1.05153 0.99996 0.90871 0.90157 0.90271 0.92247 0.79901 0.80344 0.89478 0.89922 0.74602 0.74828 0.94223 0.92627 0.93064 0.89922 0.89136 0.90654 0.91623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.35 9.61 71.23 0.68 -0.67 16 2 C -0.10 -1.59 5.80 -20.92 -0.12 -1.71 16 3 C -0.22 -2.95 10.98 66.72 0.73 -2.22 16 4 S 0.12 1.60 23.34 -56.49 -1.32 0.28 16 5 C -0.19 -2.92 10.95 66.72 0.73 -2.19 16 6 C -0.13 -2.23 5.17 -20.92 -0.11 -2.34 16 7 C 0.18 3.52 5.11 85.63 0.44 3.96 16 8 N -0.68 -16.35 5.26 -468.14 -2.46 -18.81 16 9 C 0.52 16.19 7.89 87.27 0.69 16.88 16 10 O -0.54 -18.99 16.50 -3.23 -0.05 -19.04 16 11 C 0.50 18.24 7.88 87.27 0.69 18.93 16 12 O -0.56 -22.25 16.47 -3.24 -0.05 -22.30 16 13 N -0.67 -26.46 5.46 -464.41 -2.54 -29.00 16 14 C 0.17 7.76 5.53 86.38 0.48 8.23 16 15 C 0.00 -0.11 1.47 -52.93 -0.08 -0.19 16 16 C -0.51 -26.42 8.59 25.60 0.22 -26.20 16 17 H 0.06 2.99 7.82 -2.91 -0.02 2.96 16 18 C 0.03 1.51 5.43 84.66 0.46 1.97 16 19 N -0.90 -50.38 12.65 21.45 0.27 -50.11 16 20 Si 0.95 42.80 29.54 68.60 2.03 44.83 16 21 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 22 H -0.29 -12.91 7.11 99.48 0.71 -12.21 16 23 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 24 C -0.18 -7.19 9.96 30.62 0.30 -6.89 16 25 C -0.15 -6.54 9.14 30.62 0.28 -6.26 16 26 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 27 H 0.08 0.89 8.12 -2.39 -0.02 0.87 16 28 H 0.06 0.96 7.11 -2.39 -0.02 0.94 16 29 H 0.18 1.64 8.06 -2.91 -0.02 1.62 16 30 H 0.18 2.20 8.06 -2.91 -0.02 2.18 16 31 H 0.09 1.66 7.71 -2.39 -0.02 1.64 16 32 H 0.08 1.60 8.07 -2.39 -0.02 1.58 16 33 H 0.42 9.57 7.95 -92.71 -0.74 8.83 16 34 H 0.42 16.20 7.84 -92.71 -0.73 15.48 16 35 H 0.04 2.01 8.14 -2.39 -0.02 1.99 16 36 H 0.06 2.35 8.05 -2.39 -0.02 2.33 16 37 H 0.26 14.02 8.32 -92.70 -0.77 13.25 16 38 H 0.08 3.25 8.14 -2.39 -0.02 3.23 16 39 H 0.09 3.17 8.14 -2.39 -0.02 3.15 16 40 H 0.07 3.16 8.14 -2.38 -0.02 3.14 16 41 H 0.07 3.21 8.14 -2.39 -0.02 3.20 16 Total: -1.00 -61.48 369.99 0.88 -60.60 By element: Atomic # 1 Polarization: 32.64 SS G_CDS: -0.39 Total: 32.24 kcal Atomic # 6 Polarization: -4.09 SS G_CDS: 5.40 Total: 1.31 kcal Atomic # 7 Polarization: -93.19 SS G_CDS: -4.73 Total: -97.92 kcal Atomic # 8 Polarization: -41.23 SS G_CDS: -0.11 Total: -41.34 kcal Atomic # 14 Polarization: 42.80 SS G_CDS: 2.03 Total: 44.83 kcal Atomic # 16 Polarization: 1.60 SS G_CDS: -1.32 Total: 0.28 kcal Total: -61.48 0.88 -60.60 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261158402.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.271 kcal (2) G-P(sol) polarization free energy of solvation -61.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.599 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds