Wall clock time and date at job start Tue Mar 31 2020 12:53:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31010 * 1 3 3 C 1.50701 * 119.99355 * 2 1 4 4 N 1.46495 * 109.46877 * 125.00438 * 3 2 1 5 5 C 1.46503 * 119.99857 * 269.99704 * 4 3 2 6 6 C 1.50700 * 109.47081 * 270.00127 * 5 4 3 7 7 H 1.07997 * 120.00226 * 359.97438 * 6 5 4 8 8 C 1.37875 * 119.99976 * 180.02562 * 6 5 4 9 9 N 1.31520 * 119.99818 * 180.02562 * 8 6 5 10 10 Si 1.86800 * 120.00002 * 359.97438 * 8 6 5 11 11 H 1.48497 * 109.47079 * 90.00551 * 10 8 6 12 12 H 1.48503 * 109.47191 * 210.00326 * 10 8 6 13 13 H 1.48497 * 109.47122 * 329.99927 * 10 8 6 14 14 C 1.34774 * 120.00621 * 89.99704 * 4 3 2 15 15 O 1.21273 * 120.00641 * 179.97438 * 14 4 3 16 16 C 1.50708 * 119.99638 * 0.02562 * 14 4 3 17 17 N 1.46497 * 109.47373 * 179.97438 * 16 14 4 18 18 C 1.34778 * 120.00222 * 179.97438 * 17 16 14 19 19 O 1.21697 * 119.99882 * 359.97438 * 18 17 16 20 20 C 1.46575 * 119.99949 * 179.97438 * 18 17 16 21 21 C 1.36653 * 125.45735 * 179.71779 * 20 18 17 22 22 C 1.37477 * 113.29731 * 180.26523 * 21 20 18 23 23 C 1.33820 * 115.09995 * 359.97438 * 22 21 20 24 24 C 1.50703 * 124.52170 * 179.97438 * 23 22 21 25 25 S 1.70614 * 110.95738 * 0.02562 * 23 22 21 26 26 H 1.07997 * 119.99086 * 180.02562 * 1 2 3 27 27 H 1.07994 * 120.00147 * 359.97438 * 1 2 3 28 28 H 1.07994 * 120.00147 * 180.02562 * 2 1 3 29 29 H 1.09001 * 109.47503 * 5.00326 * 3 2 1 30 30 H 1.09000 * 109.47035 * 244.99932 * 3 2 1 31 31 H 1.09002 * 109.47200 * 30.00024 * 5 4 3 32 32 H 1.09002 * 109.47397 * 150.00355 * 5 4 3 33 33 H 0.97000 * 119.99716 * 179.97438 * 9 8 6 34 34 H 1.09004 * 109.47306 * 59.99537 * 16 14 4 35 35 H 1.09006 * 109.46469 * 299.99819 * 16 14 4 36 36 H 0.97005 * 119.99613 * 359.97438 * 17 16 14 37 37 H 1.07990 * 123.34962 * 0.28782 * 21 20 18 38 38 H 1.07995 * 122.44967 * 180.02562 * 22 21 20 39 39 H 1.09000 * 109.47165 * 180.02562 * 24 23 22 40 40 H 1.08999 * 109.47144 * 300.02247 * 24 23 22 41 41 H 1.09002 * 109.46816 * 60.01466 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9937 1.3320 1.1313 5 6 2.5588 1.8650 2.4248 6 6 2.8441 3.3437 2.4804 7 1 3.3038 3.8371 1.6368 8 6 2.5192 4.0665 3.6086 9 7 2.7677 5.3571 3.6569 10 14 1.7247 3.2131 5.0680 11 1 2.7808 2.7221 5.9893 12 1 0.8486 4.1733 5.7862 13 1 0.9131 2.0656 4.5887 14 6 4.2497 0.8664 0.9824 15 8 5.0200 0.8890 1.9188 16 6 4.6973 0.3186 -0.3484 17 7 6.0919 -0.1195 -0.2520 18 6 6.7081 -0.6481 -1.3279 19 8 6.1058 -0.7618 -2.3792 20 6 8.1036 -1.0859 -1.2316 21 6 8.8325 -1.6398 -2.2462 22 6 10.1169 -1.9641 -1.8788 23 6 10.4313 -1.6858 -0.6082 24 6 11.7762 -1.9530 0.0171 25 16 9.1059 -0.9893 0.2099 26 1 -0.5398 -0.9354 0.0004 27 1 -0.5400 0.9352 0.0004 28 1 1.8501 -0.9352 -0.0004 29 1 1.3585 2.1317 0.0896 30 1 2.6212 1.4027 -0.9314 31 1 1.4887 1.6966 2.5459 32 1 3.0990 1.3604 3.2259 33 1 2.5388 5.8658 4.4505 34 1 4.6126 1.0956 -1.1082 35 1 4.0681 -0.5282 -0.6228 36 1 6.5718 -0.0292 0.5861 37 1 8.4387 -1.8059 -3.2379 38 1 10.8210 -2.4100 -2.5656 39 1 11.7625 -1.6331 1.0590 40 1 11.9944 -3.0198 -0.0325 41 1 12.5444 -1.3996 -0.5230 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001324292058.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:53:44 Heat of formation + Delta-G solvation = -37.576133 kcal Electronic energy + Delta-G solvation = -23947.879389 eV Core-core repulsion = 20340.368060 eV Total energy + Delta-G solvation = -3607.511330 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 322.114 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.41468 -40.42510 -38.71350 -37.44245 -35.72876 -35.01333 -33.80815 -33.06872 -31.08020 -29.32704 -27.53425 -26.90187 -24.68745 -24.10834 -22.43420 -21.29947 -20.85122 -19.82739 -19.15867 -19.05512 -17.90021 -17.67133 -17.03169 -16.92444 -16.59021 -16.24181 -15.95659 -15.75713 -15.38946 -14.87995 -14.80202 -14.54133 -14.41669 -14.09469 -13.98958 -13.79684 -13.53331 -13.33220 -13.09839 -12.96000 -12.89910 -12.73694 -12.51676 -12.27836 -11.96066 -11.85973 -11.74712 -11.37734 -10.93537 -10.83326 -10.47508 -10.33512 -9.66856 -9.60351 -9.55952 -8.34201 -6.39812 -0.55112 0.42559 0.87900 1.26379 1.33485 1.34579 1.36832 1.45571 1.53019 1.77627 2.07599 2.30667 2.39205 3.00173 3.38308 3.69592 3.86037 4.03103 4.13464 4.18714 4.25422 4.26967 4.37500 4.42817 4.67817 4.74355 4.74536 4.80437 4.89254 5.02039 5.05067 5.06987 5.08365 5.16102 5.40650 5.41642 5.45544 5.71283 5.88705 6.20038 6.22616 6.48148 6.62124 6.89785 7.09568 7.26476 8.82566 Molecular weight = 322.11amu Principal moments of inertia in cm(-1) A = 0.014721 B = 0.003055 C = 0.002658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1901.578947 B = 9163.190880 C =10531.440326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.187 4.187 3 C 0.127 3.873 4 N -0.586 5.586 5 C 0.228 3.772 6 C -0.537 4.537 7 H 0.031 0.969 8 C 0.013 3.987 9 N -0.944 5.944 10 Si 0.946 3.054 11 H -0.275 1.275 12 H -0.276 1.276 13 H -0.238 1.238 14 C 0.499 3.501 15 O -0.578 6.578 16 C 0.112 3.888 17 N -0.715 5.715 18 C 0.594 3.406 19 O -0.564 6.564 20 C -0.308 4.308 21 C -0.041 4.041 22 C -0.166 4.166 23 C -0.181 4.181 24 C -0.088 4.088 25 S 0.202 5.798 26 H 0.118 0.882 27 H 0.101 0.899 28 H 0.116 0.884 29 H 0.085 0.915 30 H 0.101 0.899 31 H 0.051 0.949 32 H 0.024 0.976 33 H 0.269 0.731 34 H 0.107 0.893 35 H 0.120 0.880 36 H 0.409 0.591 37 H 0.157 0.843 38 H 0.173 0.827 39 H 0.073 0.927 40 H 0.098 0.902 41 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.612 -18.389 -10.228 23.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.206 4.206 3 C 0.005 3.995 4 N -0.315 5.315 5 C 0.106 3.894 6 C -0.575 4.575 7 H 0.049 0.951 8 C -0.185 4.185 9 N -0.584 5.584 10 Si 0.768 3.232 11 H -0.200 1.200 12 H -0.202 1.202 13 H -0.161 1.161 14 C 0.287 3.713 15 O -0.459 6.459 16 C -0.015 4.015 17 N -0.368 5.368 18 C 0.383 3.617 19 O -0.445 6.445 20 C -0.428 4.428 21 C -0.076 4.076 22 C -0.196 4.196 23 C -0.302 4.302 24 C -0.146 4.146 25 S 0.470 5.530 26 H 0.136 0.864 27 H 0.120 0.880 28 H 0.134 0.866 29 H 0.103 0.897 30 H 0.119 0.881 31 H 0.069 0.931 32 H 0.042 0.958 33 H 0.078 0.922 34 H 0.125 0.875 35 H 0.137 0.863 36 H 0.247 0.753 37 H 0.174 0.826 38 H 0.191 0.809 39 H 0.092 0.908 40 H 0.116 0.884 41 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 10.285 -17.734 -8.860 22.334 hybrid contribution 0.036 0.072 -0.313 0.323 sum 10.321 -17.662 -9.173 22.419 Atomic orbital electron populations 1.24092 0.95396 1.03107 0.97559 1.23273 0.96874 0.97897 1.02536 1.20938 0.92884 0.96997 0.88667 1.47879 1.11278 1.59062 1.13299 1.19362 0.95738 0.92211 0.82127 1.21524 1.40746 0.93355 1.01904 0.95104 1.25815 0.95874 0.95319 1.01480 1.70049 1.49310 1.08508 1.30537 0.85746 0.79116 0.79373 0.78933 1.20005 1.20166 1.16132 1.20806 0.82193 0.78127 0.90206 1.90633 1.53451 1.58473 1.43335 1.21170 0.83578 1.02142 0.94596 1.45667 1.13311 1.63281 1.14588 1.17161 0.85204 0.76501 0.82860 1.90783 1.66805 1.57605 1.29305 1.24375 0.98494 1.18647 1.01266 1.20992 0.93214 0.93966 0.99389 1.20175 0.96802 1.06117 0.96470 1.24779 1.02483 1.04020 0.98882 1.20568 0.89174 1.04250 1.00648 1.83441 1.01555 1.56874 1.11146 0.86372 0.88025 0.86588 0.89702 0.88100 0.93149 0.95813 0.92245 0.87492 0.86254 0.75336 0.82552 0.80922 0.90801 0.88397 0.88569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.44 14.32 67.77 0.97 -2.47 16 2 C -0.19 -4.52 9.74 25.64 0.25 -4.27 16 3 C 0.13 3.78 5.65 85.63 0.48 4.26 16 4 N -0.59 -23.05 2.44 -830.50 -2.03 -25.08 16 5 C 0.23 10.77 4.23 85.63 0.36 11.13 16 6 C -0.54 -30.92 9.94 25.60 0.25 -30.67 16 7 H 0.03 1.99 8.06 -2.91 -0.02 1.97 16 8 C 0.01 0.78 5.47 84.65 0.46 1.24 16 9 N -0.94 -59.02 13.96 21.45 0.30 -58.72 16 10 Si 0.95 43.61 27.47 68.60 1.88 45.50 16 11 H -0.27 -12.67 7.11 99.48 0.71 -11.97 16 12 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 13 H -0.24 -9.85 6.54 99.48 0.65 -9.20 16 14 C 0.50 19.57 7.74 87.66 0.68 20.25 16 15 O -0.58 -27.13 15.25 -3.01 -0.05 -27.17 16 16 C 0.11 3.42 4.71 85.64 0.40 3.83 16 17 N -0.71 -22.15 5.52 -470.90 -2.60 -24.75 16 18 C 0.59 18.15 7.78 86.42 0.67 18.82 16 19 O -0.56 -19.57 16.84 -4.34 -0.07 -19.64 16 20 C -0.31 -7.80 6.45 24.08 0.16 -7.65 16 21 C -0.04 -0.87 10.01 21.72 0.22 -0.65 16 22 C -0.17 -2.61 10.00 21.09 0.21 -2.40 16 23 C -0.18 -2.86 6.28 24.68 0.15 -2.71 16 24 C -0.09 -0.80 10.33 71.24 0.74 -0.06 16 25 S 0.20 4.22 22.08 -56.49 -1.25 2.98 16 26 H 0.12 1.98 8.06 -2.91 -0.02 1.95 16 27 H 0.10 2.12 7.84 -2.91 -0.02 2.09 16 28 H 0.12 2.59 7.83 -2.91 -0.02 2.57 16 29 H 0.08 2.67 7.72 -2.39 -0.02 2.65 16 30 H 0.10 2.54 6.44 -2.39 -0.02 2.53 16 31 H 0.05 2.21 7.13 -2.39 -0.02 2.20 16 32 H 0.02 1.20 6.85 -2.39 -0.02 1.18 16 33 H 0.27 15.61 8.31 -92.71 -0.77 14.84 16 34 H 0.11 3.11 7.40 -2.38 -0.02 3.09 16 35 H 0.12 3.12 7.78 -2.38 -0.02 3.10 16 36 H 0.41 12.96 6.55 -92.70 -0.61 12.36 16 37 H 0.16 3.06 8.06 -2.92 -0.02 3.03 16 38 H 0.17 1.67 8.06 -2.91 -0.02 1.64 16 39 H 0.07 0.65 8.11 -2.39 -0.02 0.63 16 40 H 0.10 0.60 8.14 -2.39 -0.02 0.58 16 41 H 0.10 0.63 8.14 -2.39 -0.02 0.61 16 Total: -1.00 -76.58 367.44 2.59 -74.00 By element: Atomic # 1 Polarization: 23.87 SS G_CDS: 0.39 Total: 24.26 kcal Atomic # 6 Polarization: 2.63 SS G_CDS: 6.01 Total: 8.64 kcal Atomic # 7 Polarization: -104.22 SS G_CDS: -4.33 Total: -108.55 kcal Atomic # 8 Polarization: -46.69 SS G_CDS: -0.12 Total: -46.81 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 1.88 Total: 45.50 kcal Atomic # 16 Polarization: 4.22 SS G_CDS: -1.25 Total: 2.98 kcal Total: -76.58 2.59 -74.00 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324292058.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.419 kcal (2) G-P(sol) polarization free energy of solvation -76.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds