Wall clock time and date at job start Tue Mar 31 2020 14:00:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47117 * 2 1 4 4 H 1.08999 * 109.46523 * 57.14508 * 3 2 1 5 5 C 1.50701 * 109.46816 * 177.14733 * 3 2 1 6 6 H 1.07998 * 119.99999 * 120.00872 * 5 3 2 7 7 C 1.37873 * 119.99689 * 299.99779 * 5 3 2 8 8 N 1.31507 * 120.00548 * 0.02562 * 7 5 3 9 9 Si 1.86806 * 119.99738 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.47029 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.46984 * 119.99903 * 9 7 5 12 12 H 1.48500 * 109.46998 * 240.00034 * 9 7 5 13 13 N 1.46497 * 109.46898 * 297.14506 * 3 2 1 14 14 S 1.65604 * 119.99917 * 114.24069 * 13 3 2 15 15 O 1.42096 * 106.40247 * 313.27650 * 14 13 3 16 16 O 1.42095 * 106.40412 * 180.34748 * 14 13 3 17 17 C 1.76205 * 107.21343 * 66.81153 * 14 13 3 18 18 C 1.37785 * 120.11523 * 345.69446 * 17 14 13 19 19 C 1.38784 * 120.66983 * 179.97438 * 18 17 14 20 20 C 1.36668 * 120.52870 * 0.27043 * 19 18 17 21 21 C 1.39588 * 119.75750 * 359.47282 * 20 19 18 22 22 C 1.46495 * 134.03132 * 180.20642 * 21 20 19 23 23 C 1.34237 * 107.00061 * 180.29249 * 22 21 20 24 24 N 1.36830 * 109.93555 * 359.97438 * 23 22 21 25 25 C 1.46505 * 125.06225 * 179.97438 * 24 23 22 26 26 C 1.37693 * 109.87926 * 0.02562 * 24 23 22 27 27 H 1.09001 * 109.47180 * 307.02048 * 1 2 3 28 28 H 1.08998 * 109.47355 * 67.02067 * 1 2 3 29 29 H 1.09007 * 109.47289 * 187.02130 * 1 2 3 30 30 H 1.09001 * 109.47241 * 240.00101 * 2 1 3 31 31 H 1.08993 * 109.46863 * 120.00151 * 2 1 3 32 32 H 0.97006 * 120.00524 * 179.97438 * 8 7 5 33 33 H 0.96998 * 120.00459 * 294.24141 * 13 3 2 34 34 H 1.08002 * 119.66598 * 0.02562 * 18 17 14 35 35 H 1.08001 * 119.73857 * 179.97438 * 19 18 17 36 36 H 1.07999 * 120.11995 * 179.70258 * 20 19 18 37 37 H 1.08004 * 126.50251 * 0.31756 * 22 21 20 38 38 H 1.07996 * 125.03277 * 179.97438 * 23 22 21 39 39 H 1.08992 * 109.47468 * 88.28523 * 25 24 23 40 40 H 1.09000 * 109.47122 * 208.29042 * 25 24 23 41 41 H 1.08999 * 109.47021 * 328.28402 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6354 1.9708 0.8633 5 6 3.5453 1.4430 0.0707 6 1 4.1229 1.8975 -0.7206 7 6 4.1851 0.8635 1.1458 8 7 3.4818 0.3099 2.1093 9 14 6.0511 0.8648 1.2338 10 1 6.6027 1.5457 0.0350 11 1 6.4884 1.5850 2.4566 12 1 6.5454 -0.5348 1.2801 13 7 1.6086 2.1129 -1.2291 14 16 0.5372 3.3733 -1.1525 15 8 -0.5098 2.9578 -0.2862 16 8 0.3169 3.7947 -2.4915 17 6 1.3561 4.7053 -0.3400 18 6 2.5285 4.4795 0.3476 19 6 3.1834 5.5202 0.9912 20 6 2.6728 6.7875 0.9585 21 6 1.4891 7.0398 0.2631 22 6 0.6850 8.2407 0.0236 23 6 -0.3668 7.8666 -0.7217 24 7 -0.3020 6.5244 -0.9797 25 6 -1.2826 5.7699 -1.7642 26 6 0.8214 5.9882 -0.3913 27 1 -0.3633 0.6188 0.8205 28 1 -0.3634 0.4012 -0.9461 29 1 -0.3634 -1.0200 0.1256 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 3.9320 -0.0982 2.8655 33 1 1.9505 1.8186 -2.0878 34 1 2.9426 3.4827 0.3855 35 1 4.1013 5.3262 1.5262 36 1 3.1854 7.5915 1.4657 37 1 0.8983 9.2381 0.3790 38 1 -1.1485 8.5272 -1.0666 39 1 -1.0048 5.7987 -2.8177 40 1 -1.3032 4.7352 -1.4219 41 1 -2.2697 6.2144 -1.6364 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001423909168.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:00:31 Heat of formation + Delta-G solvation = -9.572204 kcal Electronic energy + Delta-G solvation = -26355.397379 eV Core-core repulsion = 22749.100391 eV Total energy + Delta-G solvation = -3606.296988 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 322.114 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.17866 -37.13771 -36.59994 -35.94416 -35.41427 -32.82744 -32.34818 -30.67896 -30.26955 -28.69892 -26.82487 -26.20759 -23.09808 -22.84001 -21.62025 -20.64045 -20.15700 -18.77350 -17.48444 -17.10999 -16.53129 -16.37047 -15.65778 -15.42901 -15.23132 -14.73826 -14.67117 -13.82663 -13.77656 -13.30689 -13.22564 -12.96967 -12.76778 -12.68888 -12.30791 -12.01793 -11.78997 -11.60623 -11.54350 -11.48864 -11.38448 -11.15388 -11.12084 -10.87239 -10.83460 -10.36189 -10.13238 -10.05625 -9.73136 -9.67839 -9.43978 -8.64502 -8.32520 -7.99319 -7.69627 -6.25430 -4.36740 1.01769 1.09445 1.87059 2.73065 2.83772 3.16657 3.26684 3.29226 3.60995 4.00272 4.10312 4.25107 4.69401 4.82726 4.87021 5.01732 5.21253 5.28411 5.31028 5.46857 5.58246 5.63376 5.74408 5.99088 6.03717 6.20213 6.30974 6.34676 6.35833 6.54609 6.64081 6.74094 6.83674 6.87265 6.93889 7.09966 7.22538 7.30712 7.39932 7.52145 7.59962 7.77286 7.90797 8.16139 8.69977 9.31318 10.77992 Molecular weight = 322.11amu Principal moments of inertia in cm(-1) A = 0.014877 B = 0.005795 C = 0.004501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1881.643926 B = 4830.494227 C = 6218.989625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.128 4.128 3 C 0.272 3.728 4 H 0.050 0.950 5 C -0.543 4.543 6 H 0.070 0.930 7 C 0.071 3.929 8 N -0.876 5.876 9 Si 0.895 3.105 10 H -0.270 1.270 11 H -0.281 1.281 12 H -0.282 1.282 13 N -1.100 6.100 14 S 2.687 3.313 15 O -0.963 6.963 16 O -0.988 6.988 17 C -0.680 4.680 18 C -0.001 4.001 19 C -0.167 4.167 20 C -0.025 4.025 21 C -0.136 4.136 22 C -0.197 4.197 23 C 0.042 3.958 24 N -0.489 5.489 25 C 0.068 3.932 26 C 0.173 3.827 27 H 0.056 0.944 28 H 0.032 0.968 29 H 0.033 0.967 30 H 0.040 0.960 31 H 0.103 0.897 32 H 0.267 0.733 33 H 0.410 0.590 34 H 0.185 0.815 35 H 0.131 0.869 36 H 0.124 0.876 37 H 0.148 0.852 38 H 0.170 0.830 39 H 0.092 0.908 40 H 0.065 0.935 41 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.569 10.723 -3.935 12.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.167 4.167 3 C 0.168 3.832 4 H 0.068 0.932 5 C -0.582 4.582 6 H 0.088 0.912 7 C -0.134 4.134 8 N -0.512 5.512 9 Si 0.722 3.278 10 H -0.194 1.194 11 H -0.207 1.207 12 H -0.207 1.207 13 N -0.861 5.861 14 S 2.777 3.223 15 O -0.953 6.953 16 O -0.979 6.979 17 C -0.770 4.770 18 C -0.019 4.019 19 C -0.187 4.187 20 C -0.043 4.043 21 C -0.141 4.141 22 C -0.222 4.222 23 C -0.082 4.082 24 N -0.172 5.172 25 C -0.074 4.074 26 C 0.063 3.937 27 H 0.075 0.925 28 H 0.052 0.948 29 H 0.053 0.947 30 H 0.059 0.941 31 H 0.121 0.879 32 H 0.077 0.923 33 H 0.244 0.756 34 H 0.202 0.798 35 H 0.149 0.851 36 H 0.142 0.858 37 H 0.165 0.835 38 H 0.187 0.813 39 H 0.111 0.889 40 H 0.084 0.916 41 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -5.750 10.558 -4.071 12.693 hybrid contribution 1.667 0.220 0.118 1.686 sum -4.083 10.777 -3.952 12.184 Atomic orbital electron populations 1.21855 0.98482 0.99429 1.00833 1.21914 0.92464 0.99337 1.03029 1.18765 0.94501 0.90258 0.79691 0.93213 1.21475 0.90817 1.38779 1.07139 0.91174 1.24955 0.98738 0.94409 0.95291 1.69878 1.35518 1.36225 1.09628 0.86485 0.84909 0.78095 0.78318 1.19445 1.20696 1.20749 1.55405 1.65684 1.48066 1.16952 1.01951 0.73922 0.73157 0.73292 1.93606 1.52679 1.81058 1.67925 1.93547 1.85360 1.82833 1.36127 1.29812 1.12322 1.12024 1.22805 1.22119 0.89575 1.02996 0.87238 1.20875 1.01824 0.92673 1.03296 1.20534 0.92602 0.96939 0.94274 1.19173 0.97781 0.93108 1.04050 1.21640 0.96655 0.97528 1.06344 1.21756 1.01116 0.83309 1.01985 1.44009 1.20323 1.07914 1.44965 1.22363 0.91671 0.96126 0.97241 1.17408 0.87685 0.93138 0.95439 0.92537 0.94842 0.94744 0.94096 0.87862 0.92290 0.75592 0.79809 0.85091 0.85781 0.83462 0.81275 0.88945 0.91598 0.89378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.07 8.82 37.16 0.33 -2.74 16 2 C -0.13 -2.85 5.44 -26.73 -0.15 -2.99 16 3 C 0.27 6.16 1.18 -69.08 -0.08 6.08 16 4 H 0.05 1.23 7.08 -51.93 -0.37 0.86 16 5 C -0.54 -12.85 6.64 -34.44 -0.23 -13.08 16 6 H 0.07 1.62 7.81 -52.49 -0.41 1.21 16 7 C 0.07 1.73 5.30 -17.82 -0.09 1.63 16 8 N -0.88 -22.35 11.30 55.43 0.63 -21.72 16 9 Si 0.89 19.09 29.54 -169.99 -5.02 14.07 16 10 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 11 H -0.28 -6.00 7.11 56.52 0.40 -5.59 16 12 H -0.28 -6.08 7.11 56.52 0.40 -5.67 16 13 N -1.10 -21.92 4.51 -5.88 -0.03 -21.95 16 14 S 2.69 53.92 3.95 -107.50 -0.42 53.50 16 15 O -0.96 -21.21 15.19 -57.17 -0.87 -22.08 16 16 O -0.99 -19.78 15.15 -57.17 -0.87 -20.65 16 17 C -0.68 -13.69 5.84 -39.43 -0.23 -13.92 16 18 C 0.00 -0.01 9.13 -39.55 -0.36 -0.37 16 19 C -0.17 -2.88 9.97 -39.95 -0.40 -3.28 16 20 C -0.02 -0.39 10.05 -39.65 -0.40 -0.79 16 21 C -0.14 -2.31 6.37 -105.14 -0.67 -2.98 16 22 C -0.20 -2.67 11.08 -37.67 -0.42 -3.08 16 23 C 0.04 0.54 11.29 -16.73 -0.19 0.35 16 24 N -0.49 -7.94 3.18 -121.81 -0.39 -8.33 16 25 C 0.07 0.98 9.32 59.85 0.56 1.54 16 26 C 0.17 3.28 6.72 -83.99 -0.56 2.71 16 27 H 0.06 1.23 7.76 -51.93 -0.40 0.83 16 28 H 0.03 0.65 7.69 -51.93 -0.40 0.25 16 29 H 0.03 0.63 8.14 -51.92 -0.42 0.21 16 30 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.10 2.53 6.00 -51.93 -0.31 2.21 16 32 H 0.27 6.50 8.31 -40.82 -0.34 6.16 16 33 H 0.41 7.30 8.96 -34.47 -0.31 6.99 16 34 H 0.19 3.87 3.34 -52.49 -0.18 3.70 16 35 H 0.13 1.97 8.06 -52.49 -0.42 1.54 16 36 H 0.12 1.50 8.06 -52.49 -0.42 1.08 16 37 H 0.15 1.51 8.06 -52.48 -0.42 1.08 16 38 H 0.17 1.41 8.06 -52.49 -0.42 0.99 16 39 H 0.09 1.28 7.68 -51.93 -0.40 0.88 16 40 H 0.07 1.10 4.41 -46.10 -0.20 0.90 16 41 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16 LS Contribution 337.01 15.07 5.08 5.08 Total: -1.00 -29.90 337.01 -9.86 -39.75 By element: Atomic # 1 Polarization: 18.34 SS G_CDS: -5.07 Total: 13.26 kcal Atomic # 6 Polarization: -28.03 SS G_CDS: -2.89 Total: -30.92 kcal Atomic # 7 Polarization: -52.21 SS G_CDS: 0.21 Total: -52.00 kcal Atomic # 8 Polarization: -41.00 SS G_CDS: -1.73 Total: -42.73 kcal Atomic # 14 Polarization: 19.09 SS G_CDS: -5.02 Total: 14.07 kcal Atomic # 16 Polarization: 53.92 SS G_CDS: -0.42 Total: 53.50 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -29.90 -9.86 -39.75 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001423909168.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.179 kcal (2) G-P(sol) polarization free energy of solvation -29.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.751 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds