Wall clock time and date at job start Tue Mar 31 2020 14:00:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47117 * 2 1 4 4 H 1.08999 * 109.46523 * 57.14508 * 3 2 1 5 5 C 1.50701 * 109.46816 * 177.14733 * 3 2 1 6 6 H 1.07998 * 119.99999 * 120.00872 * 5 3 2 7 7 C 1.37873 * 119.99689 * 299.99779 * 5 3 2 8 8 N 1.31507 * 120.00548 * 0.02562 * 7 5 3 9 9 Si 1.86806 * 119.99738 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.47029 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.46984 * 119.99903 * 9 7 5 12 12 H 1.48500 * 109.46998 * 240.00034 * 9 7 5 13 13 N 1.46497 * 109.46898 * 297.14506 * 3 2 1 14 14 S 1.65604 * 119.99917 * 114.24069 * 13 3 2 15 15 O 1.42096 * 106.40247 * 313.27650 * 14 13 3 16 16 O 1.42095 * 106.40412 * 180.34748 * 14 13 3 17 17 C 1.76205 * 107.21343 * 66.81153 * 14 13 3 18 18 C 1.37785 * 120.11523 * 345.69446 * 17 14 13 19 19 C 1.38784 * 120.66983 * 179.97438 * 18 17 14 20 20 C 1.36668 * 120.52870 * 0.27043 * 19 18 17 21 21 C 1.39588 * 119.75750 * 359.47282 * 20 19 18 22 22 C 1.46495 * 134.03132 * 180.20642 * 21 20 19 23 23 C 1.34237 * 107.00061 * 180.29249 * 22 21 20 24 24 N 1.36830 * 109.93555 * 359.97438 * 23 22 21 25 25 C 1.46505 * 125.06225 * 179.97438 * 24 23 22 26 26 C 1.37693 * 109.87926 * 0.02562 * 24 23 22 27 27 H 1.09001 * 109.47180 * 307.02048 * 1 2 3 28 28 H 1.08998 * 109.47355 * 67.02067 * 1 2 3 29 29 H 1.09007 * 109.47289 * 187.02130 * 1 2 3 30 30 H 1.09001 * 109.47241 * 240.00101 * 2 1 3 31 31 H 1.08993 * 109.46863 * 120.00151 * 2 1 3 32 32 H 0.97006 * 120.00524 * 179.97438 * 8 7 5 33 33 H 0.96998 * 120.00459 * 294.24141 * 13 3 2 34 34 H 1.08002 * 119.66598 * 0.02562 * 18 17 14 35 35 H 1.08001 * 119.73857 * 179.97438 * 19 18 17 36 36 H 1.07999 * 120.11995 * 179.70258 * 20 19 18 37 37 H 1.08004 * 126.50251 * 0.31756 * 22 21 20 38 38 H 1.07996 * 125.03277 * 179.97438 * 23 22 21 39 39 H 1.08992 * 109.47468 * 88.28523 * 25 24 23 40 40 H 1.09000 * 109.47122 * 208.29042 * 25 24 23 41 41 H 1.08999 * 109.47021 * 328.28402 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6354 1.9708 0.8633 5 6 3.5453 1.4430 0.0707 6 1 4.1229 1.8975 -0.7206 7 6 4.1851 0.8635 1.1458 8 7 3.4818 0.3099 2.1093 9 14 6.0511 0.8648 1.2338 10 1 6.6027 1.5457 0.0350 11 1 6.4884 1.5850 2.4566 12 1 6.5454 -0.5348 1.2801 13 7 1.6086 2.1129 -1.2291 14 16 0.5372 3.3733 -1.1525 15 8 -0.5098 2.9578 -0.2862 16 8 0.3169 3.7947 -2.4915 17 6 1.3561 4.7053 -0.3400 18 6 2.5285 4.4795 0.3476 19 6 3.1834 5.5202 0.9912 20 6 2.6728 6.7875 0.9585 21 6 1.4891 7.0398 0.2631 22 6 0.6850 8.2407 0.0236 23 6 -0.3668 7.8666 -0.7217 24 7 -0.3020 6.5244 -0.9797 25 6 -1.2826 5.7699 -1.7642 26 6 0.8214 5.9882 -0.3913 27 1 -0.3633 0.6188 0.8205 28 1 -0.3634 0.4012 -0.9461 29 1 -0.3634 -1.0200 0.1256 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 3.9320 -0.0982 2.8655 33 1 1.9505 1.8186 -2.0878 34 1 2.9426 3.4827 0.3855 35 1 4.1013 5.3262 1.5262 36 1 3.1854 7.5915 1.4657 37 1 0.8983 9.2381 0.3790 38 1 -1.1485 8.5272 -1.0666 39 1 -1.0048 5.7987 -2.8177 40 1 -1.3032 4.7352 -1.4219 41 1 -2.2697 6.2144 -1.6364 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001423909168.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:00:31 Heat of formation + Delta-G solvation = -28.557656 kcal Electronic energy + Delta-G solvation = -26356.220650 eV Core-core repulsion = 22749.100391 eV Total energy + Delta-G solvation = -3607.120259 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 322.114 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.35741 -38.61487 -38.10288 -37.62902 -37.03789 -34.23073 -33.96690 -32.36637 -31.56731 -29.92691 -28.64578 -27.36757 -24.90738 -24.12487 -22.92163 -22.04561 -21.72509 -20.29612 -19.09037 -18.52737 -18.12617 -17.73712 -17.16233 -16.92890 -16.54395 -16.32861 -15.96187 -15.53509 -15.07688 -14.90233 -14.80533 -14.28505 -13.99325 -13.88111 -13.75512 -13.48806 -13.38841 -13.23756 -13.15384 -13.04489 -12.94519 -12.70460 -12.57935 -12.45070 -12.35758 -12.04681 -11.85012 -11.62286 -11.52034 -11.19697 -10.93628 -10.51760 -10.06056 -9.27647 -8.85605 -8.12207 -6.28278 -0.50336 -0.25605 0.53849 1.46318 1.51183 1.60420 1.65643 1.71582 2.02448 2.45482 2.55975 2.69562 3.13669 3.55471 3.63583 3.71863 3.89476 4.03657 4.19604 4.30745 4.41240 4.45463 4.53786 4.57216 4.63580 4.66427 4.77651 4.88215 4.92545 5.00340 5.10209 5.23823 5.34106 5.44696 5.50134 5.62940 5.65850 5.73428 5.76748 6.04695 6.08222 6.10637 6.27512 6.40180 6.82973 7.41919 8.91481 Molecular weight = 322.11amu Principal moments of inertia in cm(-1) A = 0.014877 B = 0.005795 C = 0.004501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1881.643926 B = 4830.494227 C = 6218.989625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.127 4.127 3 C 0.280 3.720 4 H 0.023 0.977 5 C -0.544 4.544 6 H 0.072 0.928 7 C 0.030 3.970 8 N -0.906 5.906 9 Si 0.952 3.048 10 H -0.265 1.265 11 H -0.279 1.279 12 H -0.283 1.283 13 N -1.098 6.098 14 S 2.701 3.299 15 O -0.989 6.989 16 O -0.992 6.992 17 C -0.700 4.700 18 C -0.027 4.027 19 C -0.182 4.182 20 C -0.015 4.015 21 C -0.151 4.151 22 C -0.199 4.199 23 C 0.050 3.950 24 N -0.498 5.498 25 C 0.058 3.942 26 C 0.134 3.866 27 H 0.037 0.963 28 H 0.039 0.961 29 H 0.056 0.944 30 H 0.048 0.952 31 H 0.082 0.918 32 H 0.267 0.733 33 H 0.419 0.581 34 H 0.166 0.834 35 H 0.148 0.852 36 H 0.166 0.834 37 H 0.185 0.815 38 H 0.220 0.780 39 H 0.094 0.906 40 H 0.036 0.964 41 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.599 13.396 -4.420 14.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.167 4.167 3 C 0.175 3.825 4 H 0.041 0.959 5 C -0.583 4.583 6 H 0.090 0.910 7 C -0.172 4.172 8 N -0.543 5.543 9 Si 0.778 3.222 10 H -0.189 1.189 11 H -0.205 1.205 12 H -0.209 1.209 13 N -0.859 5.859 14 S 2.793 3.207 15 O -0.979 6.979 16 O -0.982 6.982 17 C -0.792 4.792 18 C -0.046 4.046 19 C -0.202 4.202 20 C -0.033 4.033 21 C -0.157 4.157 22 C -0.223 4.223 23 C -0.073 4.073 24 N -0.181 5.181 25 C -0.083 4.083 26 C 0.024 3.976 27 H 0.056 0.944 28 H 0.058 0.942 29 H 0.075 0.925 30 H 0.067 0.933 31 H 0.100 0.900 32 H 0.077 0.923 33 H 0.254 0.746 34 H 0.183 0.817 35 H 0.165 0.835 36 H 0.183 0.817 37 H 0.202 0.798 38 H 0.237 0.763 39 H 0.112 0.888 40 H 0.055 0.945 41 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -5.795 13.222 -4.590 15.148 hybrid contribution 1.601 -0.483 0.241 1.690 sum -4.194 12.739 -4.349 14.099 Atomic orbital electron populations 1.21778 0.97257 1.00529 1.00420 1.21841 0.93592 0.98945 1.02295 1.18490 0.94088 0.90190 0.79729 0.95941 1.21653 0.91366 1.38168 1.07087 0.90967 1.25605 1.02330 0.94254 0.95046 1.69992 1.36925 1.37237 1.10191 0.85587 0.80490 0.77791 0.78323 1.18869 1.20523 1.20901 1.55220 1.65614 1.48492 1.16605 1.01357 0.73415 0.73013 0.72930 1.93561 1.54084 1.81725 1.68525 1.93525 1.85517 1.82822 1.36342 1.29610 1.12942 1.12563 1.24065 1.22028 0.90472 1.03052 0.89081 1.21118 1.02537 0.92982 1.03513 1.20972 0.92066 0.97209 0.93026 1.19775 0.98209 0.94171 1.03542 1.22116 0.95939 0.97923 1.06292 1.22665 1.01925 0.82178 1.00506 1.44321 1.19712 1.09251 1.44838 1.22539 0.93695 0.95084 0.96996 1.17753 0.89451 0.93289 0.97096 0.94355 0.94199 0.92458 0.93299 0.89993 0.92345 0.74598 0.81713 0.83454 0.81669 0.79752 0.76341 0.88763 0.94484 0.84921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.99 8.82 71.98 0.63 -5.36 16 2 C -0.13 -5.82 5.44 30.59 0.17 -5.66 16 3 C 0.28 13.19 1.18 44.25 0.05 13.25 16 4 H 0.02 1.20 7.08 -2.39 -0.02 1.18 16 5 C -0.54 -26.41 6.64 25.60 0.17 -26.24 16 6 H 0.07 3.40 7.81 -2.91 -0.02 3.38 16 7 C 0.03 1.47 5.30 84.65 0.45 1.91 16 8 N -0.91 -47.58 11.30 21.44 0.24 -47.33 16 9 Si 0.95 39.51 29.54 68.60 2.03 41.53 16 10 H -0.26 -10.63 7.11 99.48 0.71 -9.93 16 11 H -0.28 -11.44 7.11 99.48 0.71 -10.74 16 12 H -0.28 -11.74 7.11 99.48 0.71 -11.03 16 13 N -1.10 -45.39 4.51 -172.52 -0.78 -46.16 16 14 S 2.70 112.25 3.95 -56.49 -0.22 112.02 16 15 O -0.99 -45.50 15.19 -128.00 -1.94 -47.45 16 16 O -0.99 -40.50 15.15 -128.00 -1.94 -42.44 16 17 C -0.70 -28.97 5.84 22.37 0.13 -28.84 16 18 C -0.03 -1.12 9.13 22.29 0.20 -0.92 16 19 C -0.18 -6.23 9.97 22.03 0.22 -6.01 16 20 C -0.01 -0.43 10.05 22.23 0.22 -0.21 16 21 C -0.15 -4.84 6.37 -20.20 -0.13 -4.97 16 22 C -0.20 -4.60 11.08 23.51 0.26 -4.34 16 23 C 0.05 1.09 11.29 83.00 0.94 2.02 16 24 N -0.50 -15.24 3.18 -539.28 -1.71 -16.96 16 25 C 0.06 1.60 9.32 127.77 1.19 2.79 16 26 C 0.13 5.03 6.72 39.03 0.26 5.29 16 27 H 0.04 1.72 7.76 -2.39 -0.02 1.70 16 28 H 0.04 1.59 7.69 -2.39 -0.02 1.57 16 29 H 0.06 2.10 8.14 -2.38 -0.02 2.08 16 30 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 31 H 0.08 4.15 6.00 -2.39 -0.01 4.14 16 32 H 0.27 13.35 8.31 -92.70 -0.77 12.58 16 33 H 0.42 15.36 8.96 -96.75 -0.87 14.49 16 34 H 0.17 7.30 3.34 -2.91 -0.01 7.29 16 35 H 0.15 4.36 8.06 -2.91 -0.02 4.34 16 36 H 0.17 3.37 8.06 -2.91 -0.02 3.34 16 37 H 0.19 2.77 8.06 -2.91 -0.02 2.74 16 38 H 0.22 2.37 8.06 -2.91 -0.02 2.34 16 39 H 0.09 2.51 7.68 -2.39 -0.02 2.49 16 40 H 0.04 1.24 4.41 -6.10 -0.03 1.21 16 41 H 0.13 2.34 8.14 -2.39 -0.02 2.32 16 Total: -1.00 -67.09 337.01 0.62 -66.47 By element: Atomic # 1 Polarization: 37.40 SS G_CDS: 0.19 Total: 37.59 kcal Atomic # 6 Polarization: -62.04 SS G_CDS: 4.77 Total: -57.27 kcal Atomic # 7 Polarization: -108.21 SS G_CDS: -2.25 Total: -110.46 kcal Atomic # 8 Polarization: -86.00 SS G_CDS: -3.88 Total: -89.89 kcal Atomic # 14 Polarization: 39.51 SS G_CDS: 2.03 Total: 41.53 kcal Atomic # 16 Polarization: 112.25 SS G_CDS: -0.22 Total: 112.02 kcal Total: -67.09 0.62 -66.47 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001423909168.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.911 kcal (2) G-P(sol) polarization free energy of solvation -67.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.469 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds