Wall clock time and date at job start Tue Mar 31 2020 14:04:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50698 * 120.00328 * 2 1 4 4 N 1.46505 * 109.47335 * 124.99732 * 3 2 1 5 5 C 1.46498 * 119.99999 * 269.99924 * 4 3 2 6 6 C 1.50696 * 109.47177 * 270.00110 * 5 4 3 7 7 H 1.07998 * 120.00492 * 0.02562 * 6 5 4 8 8 C 1.37877 * 119.99869 * 180.02562 * 6 5 4 9 9 N 1.31512 * 120.00423 * 359.97438 * 8 6 5 10 10 Si 1.86799 * 120.00054 * 179.97438 * 8 6 5 11 11 H 1.48502 * 109.47117 * 59.99835 * 10 8 6 12 12 H 1.48503 * 109.47377 * 180.02562 * 10 8 6 13 13 H 1.48502 * 109.47341 * 300.00107 * 10 8 6 14 14 C 1.34771 * 119.99888 * 89.99999 * 4 3 2 15 15 O 1.21589 * 119.99935 * 179.97438 * 14 4 3 16 16 N 1.34779 * 120.00352 * 359.97438 * 14 4 3 17 17 C 1.40086 * 120.00024 * 185.29556 * 16 14 4 18 18 C 1.39044 * 119.95658 * 213.25191 * 17 16 14 19 19 C 1.38126 * 120.28038 * 180.02562 * 18 17 16 20 20 C 1.38319 * 120.20054 * 359.97438 * 19 18 17 21 21 F 1.35100 * 120.04269 * 179.97438 * 20 19 18 22 22 C 1.39863 * 119.91577 * 0.02562 * 20 19 18 23 23 C 1.47578 * 120.14203 * 180.02562 * 22 20 19 24 24 O 1.21492 * 119.99794 * 359.72602 * 23 22 20 25 25 O 1.34734 * 119.99966 * 179.97438 * 23 22 20 26 26 C 1.38455 * 119.96092 * 33.51074 * 17 16 14 27 27 H 1.08009 * 119.99860 * 0.02562 * 1 2 3 28 28 H 1.07997 * 120.00348 * 180.02562 * 1 2 3 29 29 H 1.08004 * 119.99852 * 179.97438 * 2 1 3 30 30 H 1.09000 * 109.47157 * 5.00098 * 3 2 1 31 31 H 1.09000 * 109.47264 * 244.99694 * 3 2 1 32 32 H 1.09007 * 109.47063 * 29.99708 * 5 4 3 33 33 H 1.08995 * 109.47258 * 149.99476 * 5 4 3 34 34 H 0.96998 * 120.00359 * 179.97438 * 9 8 6 35 35 H 0.97001 * 119.99564 * 5.30437 * 16 14 4 36 36 H 1.08000 * 119.85874 * 359.97438 * 18 17 16 37 37 H 1.08000 * 119.89527 * 179.97438 * 19 18 17 38 38 H 0.96696 * 116.99609 * 180.02562 * 25 23 22 39 39 H 1.08002 * 120.10044 * 0.02562 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 2.9938 1.3319 1.1315 5 6 2.5589 1.8650 2.4249 6 6 2.8443 3.3436 2.4803 7 1 3.3033 3.8371 1.6364 8 6 2.5194 4.0666 3.6085 9 7 1.9599 3.4659 4.6360 10 14 2.8738 5.8993 3.6776 11 1 2.1381 6.5873 2.5864 12 1 2.4340 6.4396 4.9891 13 1 4.3318 6.1282 3.5124 14 6 4.2496 0.8661 0.9825 15 8 5.0219 0.8888 1.9214 16 7 4.6497 0.3751 -0.2073 17 6 5.9161 -0.2101 -0.3334 18 6 6.6195 -0.0926 -1.5270 19 6 7.8685 -0.6675 -1.6589 20 6 8.4288 -1.3641 -0.6035 21 9 9.6504 -1.9256 -0.7361 22 6 7.7286 -1.4875 0.6010 23 6 8.3219 -2.2291 1.7305 24 8 9.4187 -2.7384 1.6136 25 8 7.6450 -2.3457 2.8896 26 6 6.4636 -0.9094 0.7288 27 1 -0.5400 0.9354 -0.0004 28 1 -0.5400 -0.9353 0.0004 29 1 1.8500 -0.9354 0.0004 30 1 1.3586 2.1316 0.0896 31 1 2.6214 1.4025 -0.9313 32 1 1.4887 1.6968 2.5459 33 1 3.0988 1.3603 3.2260 34 1 1.7317 3.9745 5.4298 35 1 4.0606 0.4272 -0.9761 36 1 6.1871 0.4498 -2.3548 37 1 8.4092 -0.5727 -2.5890 38 1 8.0745 -2.8404 3.6009 39 1 5.9156 -1.0048 1.6545 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001588826736.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:04:15 Heat of formation + Delta-G solvation = -100.416406 kcal Electronic energy + Delta-G solvation = -26714.014471 eV Core-core repulsion = 22537.565007 eV Total energy + Delta-G solvation = -4176.449464 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.116 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -48.92778 -40.66112 -39.96977 -38.40142 -36.10623 -35.88805 -34.51014 -33.21326 -32.18567 -31.71194 -29.36306 -27.41917 -25.60825 -24.99244 -23.60510 -22.60913 -21.22957 -20.16514 -19.53523 -18.55724 -17.86689 -17.54994 -17.25789 -16.55058 -16.14239 -16.04519 -15.98636 -15.19431 -15.11173 -14.94921 -14.58324 -14.23045 -14.14280 -13.51475 -13.49779 -13.19477 -12.94811 -12.84726 -12.50551 -12.23947 -11.89913 -11.69192 -11.58278 -11.37112 -11.17790 -10.97247 -10.67976 -10.63583 -10.24597 -10.18384 -9.72669 -9.56453 -9.31432 -9.29286 -8.47399 -8.15960 -7.75682 -6.08798 -4.13910 0.41957 1.04290 2.29871 2.39163 2.86806 3.01982 3.28849 3.34145 3.35551 3.38952 3.79501 4.05040 4.24654 4.42139 4.48924 4.74818 4.97268 5.06952 5.15376 5.23151 5.25442 5.28137 5.41026 5.64315 5.83111 5.85892 5.91777 6.04431 6.13455 6.29843 6.41887 6.60762 6.68949 6.82785 6.86302 7.25766 7.39271 7.53575 7.83314 7.87703 8.16475 8.40231 8.85197 9.06555 9.51431 10.99103 Molecular weight = 322.12amu Principal moments of inertia in cm(-1) A = 0.012491 B = 0.003584 C = 0.003220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2241.158809 B = 7810.219983 C = 8694.145264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.174 4.174 3 C 0.136 3.864 4 N -0.599 5.599 5 C 0.262 3.738 6 C -0.530 4.530 7 H 0.057 0.943 8 C 0.064 3.936 9 N -0.893 5.893 10 Si 0.898 3.102 11 H -0.277 1.277 12 H -0.286 1.286 13 H -0.276 1.276 14 C 0.696 3.304 15 O -0.562 6.562 16 N -0.695 5.695 17 C 0.162 3.838 18 C -0.091 4.091 19 C -0.144 4.144 20 C 0.134 3.866 21 F -0.120 7.120 22 C -0.146 4.146 23 C 0.531 3.469 24 O -0.508 6.508 25 O -0.502 6.502 26 C -0.037 4.037 27 H 0.100 0.900 28 H 0.095 0.905 29 H 0.105 0.895 30 H 0.093 0.907 31 H 0.067 0.933 32 H 0.036 0.964 33 H 0.046 0.954 34 H 0.264 0.736 35 H 0.405 0.595 36 H 0.142 0.858 37 H 0.147 0.853 38 H 0.415 0.585 39 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.648 -10.262 -13.835 17.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.193 4.193 3 C 0.012 3.988 4 N -0.333 5.333 5 C 0.143 3.857 6 C -0.569 4.569 7 H 0.075 0.925 8 C -0.139 4.139 9 N -0.532 5.532 10 Si 0.725 3.275 11 H -0.203 1.203 12 H -0.212 1.212 13 H -0.202 1.202 14 C 0.398 3.602 15 O -0.438 6.438 16 N -0.345 5.345 17 C 0.065 3.935 18 C -0.113 4.113 19 C -0.163 4.163 20 C 0.113 3.887 21 F -0.098 7.098 22 C -0.149 4.149 23 C 0.375 3.625 24 O -0.398 6.398 25 O -0.313 6.313 26 C -0.058 4.058 27 H 0.118 0.882 28 H 0.113 0.887 29 H 0.123 0.877 30 H 0.111 0.889 31 H 0.085 0.915 32 H 0.054 0.946 33 H 0.064 0.936 34 H 0.074 0.926 35 H 0.243 0.757 36 H 0.160 0.840 37 H 0.165 0.835 38 H 0.273 0.727 39 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 4.163 -10.077 -13.198 17.119 hybrid contribution 0.281 0.726 0.169 0.796 sum 4.444 -9.352 -13.029 16.642 Atomic orbital electron populations 1.23844 0.95825 1.01895 0.99864 1.23422 0.96513 0.98860 1.00509 1.20553 0.93229 0.95865 0.89118 1.47619 1.08466 1.62858 1.14318 1.19269 0.95357 0.93636 0.77466 1.21392 1.40863 0.93325 1.01329 0.92512 1.24905 0.94967 0.98732 0.95284 1.69912 1.41806 1.36321 1.05158 0.86570 0.78851 0.84877 0.77177 1.20272 1.21154 1.20193 1.15963 0.83362 0.78667 0.82181 1.90943 1.52468 1.61419 1.38940 1.43045 1.15677 1.62740 1.13038 1.17434 0.86713 0.94833 0.94509 1.20981 0.93365 0.99193 0.97716 1.20806 0.96447 1.00372 0.98718 1.17554 0.81449 0.96402 0.93300 1.91572 1.39801 1.82442 1.96022 1.18937 0.97241 1.06499 0.92215 1.20521 0.82537 0.77207 0.82258 1.90930 1.20523 1.45499 1.82839 1.84634 1.51345 1.71533 1.23770 1.21539 0.93196 0.90926 1.00158 0.88183 0.88679 0.87713 0.88892 0.91527 0.94619 0.93600 0.92594 0.75742 0.84028 0.83485 0.72662 0.81809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.03 14.32 29.02 0.42 -1.61 16 2 C -0.17 -2.16 9.85 -36.03 -0.35 -2.52 16 3 C 0.14 1.94 5.66 -5.19 -0.03 1.91 16 4 N -0.60 -11.62 2.44 -182.18 -0.44 -12.06 16 5 C 0.26 6.47 5.16 -5.20 -0.03 6.44 16 6 C -0.53 -14.41 9.39 -34.44 -0.32 -14.74 16 7 H 0.06 1.54 7.81 -52.49 -0.41 1.13 16 8 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 9 N -0.89 -25.80 13.29 55.43 0.74 -25.07 16 10 Si 0.90 21.35 29.54 -169.99 -5.02 16.33 16 11 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 12 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 13 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 14 C 0.70 13.43 8.01 -86.92 -0.70 12.73 16 15 O -0.56 -13.30 13.62 5.29 0.07 -13.23 16 16 N -0.69 -9.63 5.22 -14.25 -0.07 -9.71 16 17 C 0.16 2.16 6.27 -83.71 -0.53 1.64 16 18 C -0.09 -0.91 9.95 -39.32 -0.39 -1.30 16 19 C -0.14 -1.45 10.00 -39.59 -0.40 -1.85 16 20 C 0.13 1.76 7.28 -38.94 -0.28 1.47 16 21 F -0.12 -1.73 15.54 2.25 0.03 -1.70 16 22 C -0.15 -2.12 5.88 -104.95 -0.62 -2.73 16 23 C 0.53 7.85 8.27 34.54 0.29 8.14 16 24 O -0.51 -8.50 16.12 -19.26 -0.31 -8.81 16 25 O -0.50 -6.32 12.68 -40.58 -0.51 -6.83 16 26 C -0.04 -0.56 8.22 -38.97 -0.32 -0.88 16 27 H 0.10 1.13 7.84 -52.48 -0.41 0.72 16 28 H 0.09 0.94 8.06 -52.49 -0.42 0.52 16 29 H 0.10 1.25 8.06 -52.48 -0.42 0.82 16 30 H 0.09 1.40 7.72 -51.93 -0.40 1.00 16 31 H 0.07 0.73 6.29 -51.93 -0.33 0.40 16 32 H 0.04 0.90 8.07 -51.93 -0.42 0.48 16 33 H 0.05 1.29 7.42 -51.93 -0.39 0.91 16 34 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 35 H 0.41 4.20 6.51 -40.82 -0.27 3.94 16 36 H 0.14 0.96 8.06 -52.49 -0.42 0.54 16 37 H 0.15 1.05 8.06 -52.49 -0.42 0.62 16 38 H 0.41 3.09 9.11 45.56 0.42 3.51 16 39 H 0.16 2.84 5.97 -52.49 -0.31 2.53 16 LS Contribution 350.76 15.07 5.29 5.29 Total: -1.00 -34.99 350.76 -6.94 -41.93 By element: Atomic # 1 Polarization: 8.83 SS G_CDS: -3.34 Total: 5.49 kcal Atomic # 6 Polarization: 11.73 SS G_CDS: -3.36 Total: 8.37 kcal Atomic # 7 Polarization: -47.05 SS G_CDS: 0.22 Total: -46.84 kcal Atomic # 8 Polarization: -28.12 SS G_CDS: -0.75 Total: -28.87 kcal Atomic # 9 Polarization: -1.73 SS G_CDS: 0.03 Total: -1.70 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -34.99 -6.94 -41.93 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001588826736.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.488 kcal (2) G-P(sol) polarization free energy of solvation -34.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.928 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds