Wall clock time and date at job start Tue Mar 31 2020 13:58:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.47087 * 2 1 4 4 H 1.08998 * 109.47126 * 185.16115 * 3 2 1 5 5 C 1.50707 * 109.46908 * 305.15513 * 3 2 1 6 6 H 1.07997 * 119.99540 * 120.00014 * 5 3 2 7 7 C 1.37874 * 119.99720 * 300.00403 * 5 3 2 8 8 N 1.31515 * 120.00637 * 359.97438 * 7 5 3 9 9 Si 1.86806 * 119.99693 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.47165 * 89.99898 * 9 7 5 11 11 H 1.48493 * 109.47027 * 209.99754 * 9 7 5 12 12 H 1.48493 * 109.47047 * 329.99960 * 9 7 5 13 13 N 1.46902 * 109.47479 * 65.15618 * 3 2 1 14 14 C 1.46899 * 110.99566 * 85.89851 * 13 3 2 15 15 C 1.50704 * 109.46488 * 174.82374 * 14 13 3 16 16 C 1.38403 * 120.36351 * 105.00481 * 15 14 13 17 17 C 1.39732 * 118.33080 * 179.97438 * 16 15 14 18 18 C 1.48457 * 120.51632 * 180.02562 * 17 16 15 19 19 N 1.34049 * 126.67482 * 359.68602 * 18 17 16 20 20 N 1.28990 * 107.26675 * 179.83325 * 19 18 17 21 21 N 1.28728 * 108.94329 * 0.43835 * 20 19 18 22 22 H 0.96994 * 125.33793 * 179.70169 * 21 20 19 23 23 N 1.28874 * 109.31936 * 359.72325 * 21 20 19 24 24 C 1.39265 * 118.96241 * 359.97438 * 17 16 15 25 25 N 1.31749 * 120.61929 * 0.02562 * 24 17 16 26 26 C 1.32010 * 121.82855 * 359.65491 * 25 24 17 27 27 Cl 1.73602 * 119.50576 * 180.34019 * 26 25 24 28 28 H 1.09005 * 109.46739 * 174.84890 * 1 2 3 29 29 H 1.08999 * 109.47071 * 54.85329 * 1 2 3 30 30 H 1.08997 * 109.47113 * 294.85075 * 1 2 3 31 31 H 1.09003 * 109.46907 * 119.99603 * 2 1 3 32 32 H 1.09001 * 109.47535 * 239.99354 * 2 1 3 33 33 H 0.96995 * 120.00287 * 180.02562 * 8 7 5 34 34 H 1.00899 * 110.99678 * 321.94692 * 13 3 2 35 35 H 1.08995 * 109.47219 * 294.82205 * 14 13 3 36 36 H 1.08999 * 109.47280 * 54.82882 * 14 13 3 37 37 H 1.08000 * 120.83104 * 0.02562 * 16 15 14 38 38 H 1.08000 * 119.69238 * 179.97438 * 24 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1260 1.4439 -0.0924 5 6 1.4360 2.1888 -1.1617 6 1 0.8269 3.0627 -0.9841 7 6 1.6612 1.7558 -2.4512 8 7 2.4034 0.6918 -2.6675 9 14 0.9120 2.6804 -3.8911 10 1 1.8533 3.7353 -4.3456 11 1 0.6531 1.7343 -5.0060 12 1 -0.3657 3.3066 -3.4664 13 7 1.6546 2.0982 1.2568 14 6 2.6431 1.8368 2.3115 15 6 2.2829 2.6255 3.5441 16 6 1.7246 1.9929 4.6412 17 6 1.4075 2.7651 5.7617 18 6 0.8074 2.1364 6.9653 19 7 0.5054 0.8402 7.1251 20 7 0.0082 0.7059 8.3078 21 7 -0.0200 1.8574 8.8825 22 1 -0.3525 2.0299 9.7771 23 7 0.4625 2.7451 8.0824 24 6 1.6643 4.1335 5.7323 25 7 2.1973 4.6934 4.6654 26 6 2.5134 3.9896 3.5942 27 17 3.2212 4.7881 2.2248 28 1 -0.3633 -1.0236 -0.0923 29 1 -0.3633 0.5916 -0.8403 30 1 -0.3633 0.4319 0.9325 31 1 1.8933 -0.5138 0.8901 32 1 1.8934 -0.5139 -0.8899 33 1 2.5620 0.3874 -3.5747 34 1 0.7319 1.8105 1.5466 35 1 2.6479 0.7731 2.5494 36 1 3.6322 2.1361 1.9648 37 1 1.5395 0.9289 4.6317 38 1 1.4235 4.7417 6.5917 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001590419485.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:58:52 Heat of formation + Delta-G solvation = 131.828986 kcal Electronic energy + Delta-G solvation = -24014.912829 eV Core-core repulsion = 20341.456158 eV Total energy + Delta-G solvation = -3673.456671 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 322.100 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -45.51397 -41.46648 -38.34271 -37.55907 -35.63334 -35.26565 -34.83828 -33.54831 -32.26846 -31.22856 -28.44943 -26.60381 -25.94942 -25.53602 -24.92270 -23.94086 -22.36554 -21.12703 -20.23984 -18.47948 -18.18732 -18.14451 -17.92812 -17.08349 -16.69720 -16.12987 -15.70254 -15.32775 -15.13297 -14.67841 -14.59576 -14.36261 -14.13734 -13.94939 -13.55073 -13.35705 -13.11284 -12.97132 -12.78750 -12.54418 -12.41758 -12.37156 -12.22337 -12.07637 -11.98135 -11.87397 -11.57220 -11.34265 -10.98137 -10.79778 -10.74526 -10.36068 -9.77550 -8.86261 -7.99289 -6.05422 -0.68586 -0.00159 0.11383 0.89406 1.13121 1.37939 1.44774 1.47382 1.55872 2.47259 2.51067 2.53843 3.00342 3.30283 3.32387 3.65472 3.68845 3.72611 4.06389 4.09228 4.26168 4.42371 4.56332 4.63456 4.69052 4.76294 4.83926 4.89475 4.98476 5.18297 5.24848 5.45067 5.50504 5.59575 5.77995 5.82735 5.90962 6.39596 6.53067 6.73697 6.89204 7.06560 7.06633 7.61497 9.05803 Molecular weight = 322.10amu Principal moments of inertia in cm(-1) A = 0.017298 B = 0.003283 C = 0.002906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1618.286827 B = 8525.576925 C = 9631.366402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.140 4.140 3 C 0.228 3.772 4 H 0.003 0.997 5 C -0.490 4.490 6 H 0.051 0.949 7 C 0.016 3.984 8 N -0.920 5.920 9 Si 0.943 3.057 10 H -0.283 1.283 11 H -0.288 1.288 12 H -0.271 1.271 13 N -0.675 5.675 14 C 0.102 3.898 15 C -0.111 4.111 16 C -0.012 4.012 17 C -0.069 4.069 18 C 0.217 3.783 19 N -0.290 5.290 20 N -0.053 5.053 21 N -0.195 5.195 22 H 0.496 0.504 23 N -0.283 5.283 24 C 0.161 3.839 25 N -0.493 5.493 26 C 0.198 3.802 27 Cl -0.017 7.017 28 H 0.039 0.961 29 H 0.043 0.957 30 H 0.049 0.951 31 H 0.031 0.969 32 H 0.061 0.939 33 H 0.257 0.743 34 H 0.332 0.668 35 H 0.049 0.951 36 H 0.074 0.926 37 H 0.165 0.835 38 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.368 2.643 24.109 24.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.179 4.179 3 C 0.119 3.881 4 H 0.021 0.979 5 C -0.529 4.529 6 H 0.069 0.931 7 C -0.182 4.182 8 N -0.560 5.560 9 Si 0.770 3.230 10 H -0.209 1.209 11 H -0.214 1.214 12 H -0.195 1.195 13 N -0.305 5.305 14 C -0.028 4.028 15 C -0.115 4.115 16 C -0.040 4.040 17 C -0.074 4.074 18 C -0.064 4.064 19 N -0.162 5.162 20 N -0.048 5.048 21 N -0.046 5.046 22 H 0.356 0.644 23 N -0.136 5.136 24 C 0.000 4.000 25 N -0.204 5.204 26 C 0.034 3.966 27 Cl 0.012 6.988 28 H 0.058 0.942 29 H 0.062 0.938 30 H 0.068 0.932 31 H 0.049 0.951 32 H 0.079 0.921 33 H 0.066 0.934 34 H 0.151 0.849 35 H 0.067 0.933 36 H 0.093 0.907 37 H 0.183 0.817 38 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -3.045 3.607 24.007 24.466 hybrid contribution -0.436 -0.888 -0.823 1.287 sum -3.481 2.719 23.184 23.601 Atomic orbital electron populations 1.21479 0.96194 0.99416 1.00777 1.21970 0.96268 1.00056 0.99644 1.18913 0.93878 0.89146 0.86127 0.97893 1.21260 1.29891 1.11050 0.90732 0.93096 1.25487 0.96137 0.95861 1.00758 1.69993 1.40180 1.25060 1.20807 0.85791 0.78994 0.78439 0.79788 1.20946 1.21366 1.19538 1.60666 1.04159 1.63009 1.02705 1.20778 0.97305 0.96383 0.88285 1.20503 1.00871 0.92846 0.97239 1.21652 0.91303 1.01699 0.89392 1.18222 1.04014 0.94499 0.90692 1.23197 1.01575 0.87904 0.93736 1.76124 1.14900 1.16708 1.08459 1.78905 1.14946 1.09025 1.01909 1.47805 1.37781 1.01607 1.17439 0.64394 1.74877 1.16467 1.20243 1.02035 1.23097 0.90826 0.90965 0.95106 1.67216 1.13382 1.39845 0.99914 1.21862 0.95647 0.89387 0.89724 1.98450 1.80664 1.80759 1.38951 0.94196 0.93796 0.93245 0.95076 0.92082 0.93392 0.84913 0.93280 0.90729 0.81730 0.78572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.87 9.40 71.98 0.68 -4.19 16 2 C -0.14 -6.20 5.51 30.59 0.17 -6.04 16 3 C 0.23 10.74 2.33 44.17 0.10 10.84 16 4 H 0.00 0.17 7.70 -2.39 -0.02 0.15 16 5 C -0.49 -25.97 7.25 25.60 0.19 -25.79 16 6 H 0.05 2.77 7.81 -2.91 -0.02 2.74 16 7 C 0.02 0.84 5.28 84.65 0.45 1.29 16 8 N -0.92 -51.75 11.38 21.45 0.24 -51.51 16 9 Si 0.94 43.83 29.54 68.60 2.03 45.86 16 10 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 11 H -0.29 -13.21 7.11 99.48 0.71 -12.51 16 12 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 13 N -0.67 -26.30 6.11 -499.45 -3.05 -29.35 16 14 C 0.10 3.33 4.98 85.56 0.43 3.76 16 15 C -0.11 -3.14 5.45 -19.78 -0.11 -3.25 16 16 C -0.01 -0.29 9.47 22.67 0.21 -0.08 16 17 C -0.07 -1.48 5.89 -19.94 -0.12 -1.60 16 18 C 0.22 4.30 7.95 137.38 1.09 5.40 16 19 N -0.29 -6.27 12.31 -52.18 -0.64 -6.91 16 20 N -0.05 -0.89 13.47 37.02 0.50 -0.40 16 21 N -0.19 -1.99 7.90 37.02 0.29 -1.70 16 22 H 0.50 -0.10 8.96 -347.55 -3.12 -3.21 16 23 N -0.28 -4.29 12.11 -52.13 -0.63 -4.92 16 24 C 0.16 3.43 10.87 84.95 0.92 4.35 16 25 N -0.49 -13.47 10.33 -185.84 -1.92 -15.39 16 26 C 0.20 5.96 7.27 84.71 0.62 6.58 16 27 Cl -0.02 -0.57 27.70 -2.72 -0.08 -0.65 16 28 H 0.04 1.44 8.14 -2.38 -0.02 1.42 16 29 H 0.04 1.98 6.85 -2.39 -0.02 1.96 16 30 H 0.05 1.74 6.63 -2.39 -0.02 1.72 16 31 H 0.03 1.23 7.50 -2.39 -0.02 1.21 16 32 H 0.06 3.14 6.23 -2.39 -0.01 3.12 16 33 H 0.26 13.98 8.31 -92.71 -0.77 13.21 16 34 H 0.33 12.34 6.69 -89.69 -0.60 11.74 16 35 H 0.05 1.48 7.39 -2.39 -0.02 1.46 16 36 H 0.07 2.60 7.35 -2.39 -0.02 2.59 16 37 H 0.17 3.50 7.95 -2.91 -0.02 3.48 16 38 H 0.20 3.00 7.89 -2.91 -0.02 2.98 16 Total: -1.00 -64.44 339.23 -1.20 -65.64 By element: Atomic # 1 Polarization: 10.61 SS G_CDS: -2.57 Total: 8.04 kcal Atomic # 6 Polarization: -13.35 SS G_CDS: 4.63 Total: -8.72 kcal Atomic # 7 Polarization: -104.96 SS G_CDS: -5.21 Total: -110.17 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 2.03 Total: 45.86 kcal Atomic # 17 Polarization: -0.57 SS G_CDS: -0.08 Total: -0.65 kcal Total: -64.44 -1.20 -65.64 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001590419485.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 197.474 kcal (2) G-P(sol) polarization free energy of solvation -64.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 133.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.645 kcal (6) G-S(sol) free energy of system = (1) + (5) 131.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds