Wall clock time and date at job start Tue Mar 31 2020 13:19:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.29881 * 124.85435 * 2 1 4 4 C 1.36099 * 108.81791 * 179.97438 * 3 2 1 5 5 C 1.39638 * 133.73125 * 179.97438 * 4 3 2 6 6 C 1.36570 * 119.94704 * 179.97438 * 5 4 3 7 7 C 1.39348 * 120.48452 * 0.02562 * 6 5 4 8 8 N 1.39850 * 119.83961 * 179.97438 * 7 6 5 9 9 C 1.34774 * 120.00444 * 35.73910 * 8 7 6 10 10 O 1.21632 * 119.99535 * 355.49913 * 9 8 7 11 11 C 1.47377 * 120.00547 * 175.49763 * 9 8 7 12 12 C 1.39261 * 120.28083 * 5.60263 * 11 9 8 13 13 C 1.38196 * 120.08486 * 180.02562 * 12 11 9 14 14 C 1.38844 * 120.68525 * 0.02562 * 13 12 11 15 15 C 1.37589 * 120.57377 * 0.02562 * 14 13 12 16 16 C 1.40714 * 119.88249 * 359.66602 * 15 14 13 17 17 C 1.40868 * 120.33022 * 180.30060 * 16 15 14 18 18 H 1.07993 * 120.00212 * 213.45525 * 17 16 15 19 19 C 1.40277 * 119.99722 * 33.46446 * 17 16 15 20 20 N 1.30631 * 120.00151 * 9.09110 * 19 17 16 21 21 Si 1.86801 * 119.99998 * 189.09623 * 19 17 16 22 22 H 1.48502 * 109.46996 * 359.97438 * 21 19 17 23 23 H 1.48505 * 109.47153 * 119.99488 * 21 19 17 24 24 H 1.48497 * 109.47234 * 239.99887 * 21 19 17 25 25 C 1.38586 * 120.31301 * 0.25647 * 7 6 5 26 26 C 1.38589 * 119.67730 * 359.48784 * 25 7 6 27 27 O 1.34291 * 124.85052 * 179.97438 * 2 1 3 28 28 H 1.08997 * 109.47547 * 270.03924 * 1 2 3 29 29 H 1.09001 * 109.47432 * 30.04728 * 1 2 3 30 30 H 1.09006 * 109.46945 * 150.04503 * 1 2 3 31 31 H 1.08001 * 120.02301 * 359.97438 * 5 4 3 32 32 H 1.08001 * 119.75654 * 180.02562 * 6 5 4 33 33 H 0.97010 * 119.99748 * 216.01253 * 8 7 6 34 34 H 1.07995 * 119.95679 * 0.02977 * 12 11 9 35 35 H 1.08001 * 119.66170 * 180.02562 * 13 12 11 36 36 H 1.07996 * 119.71752 * 179.97438 * 14 13 12 37 37 H 1.08005 * 120.05379 * 179.97438 * 15 14 13 38 38 H 0.96998 * 119.99865 * 180.02562 * 20 19 17 39 39 H 1.08003 * 120.16447 * 179.72572 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2492 1.0658 0.0000 4 6 3.5572 0.6898 0.0006 5 6 4.7637 1.3929 0.0004 6 6 5.9485 0.7138 0.0017 7 6 5.9647 -0.6796 0.0026 8 7 7.1858 -1.3614 0.0034 9 6 8.2359 -0.8623 0.6850 10 8 8.1469 0.2207 1.2315 11 6 9.4919 -1.6287 0.7683 12 6 9.6411 -2.8126 0.0504 13 6 10.8204 -3.5283 0.1319 14 6 11.8675 -3.0807 0.9264 15 6 11.7496 -1.9153 1.6481 16 6 10.5618 -1.1641 1.5778 17 6 10.4333 0.0337 2.3078 18 1 9.4719 0.3232 2.7056 19 6 11.5541 0.8506 2.5181 20 7 12.6729 0.5980 1.8929 21 14 11.4468 2.2996 3.6921 22 1 10.0800 2.3695 4.2685 23 1 12.4371 2.1255 4.7850 24 1 11.7378 3.5559 2.9558 25 6 4.7765 -1.3929 -0.0031 26 6 3.5684 -0.7137 0.0010 27 8 2.2743 -1.1020 0.0005 28 1 -0.3634 0.0007 1.0276 29 1 -0.3634 0.8895 -0.5146 30 1 -0.3633 -0.8904 -0.5132 31 1 4.7597 2.4729 -0.0008 32 1 6.8799 1.2607 0.0019 33 1 7.2781 -2.1915 -0.4900 34 1 8.8341 -3.1718 -0.5709 35 1 10.9289 -4.4454 -0.4281 36 1 12.7821 -3.6526 0.9789 37 1 12.5692 -1.5750 2.2638 38 1 13.4480 1.1627 2.0386 39 1 4.7918 -2.4728 -0.0068 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001629484574.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:19:08 Heat of formation + Delta-G solvation = 8.885551 kcal Electronic energy + Delta-G solvation = -25462.669183 eV Core-core repulsion = 21721.728632 eV Total energy + Delta-G solvation = -3740.940551 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.110 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -44.27346 -41.39657 -39.39465 -38.22374 -36.21766 -35.68862 -35.04808 -32.41158 -31.88755 -31.69464 -31.05596 -28.40411 -27.24724 -24.81145 -24.24822 -23.28867 -22.80334 -22.36012 -21.29332 -19.62008 -19.17332 -18.43075 -18.25862 -17.90406 -17.13815 -17.00259 -16.11064 -15.91520 -15.82321 -15.31462 -15.15338 -14.99414 -14.77053 -14.51839 -14.20602 -14.08995 -13.98315 -13.64738 -13.41864 -13.26962 -12.92254 -12.87302 -12.74991 -12.53101 -12.42410 -12.30336 -11.89934 -11.59449 -11.51250 -11.17268 -10.96029 -10.36052 -9.90444 -9.48434 -9.27097 -8.95462 -8.70826 -6.39629 -0.42432 0.12966 0.46923 1.00121 1.29051 1.34075 1.35951 1.47496 1.49120 2.18811 2.19994 2.24242 2.59498 2.77124 2.86210 3.44040 3.69795 3.88093 3.96570 3.99470 4.17932 4.33654 4.37203 4.53895 4.59508 4.65307 4.73925 4.84613 4.85673 4.92544 5.02474 5.09187 5.12817 5.22293 5.26917 5.31472 5.41368 5.59569 5.74319 5.80299 6.02407 6.09923 6.31408 6.51994 6.55899 6.70391 6.86932 6.94688 7.44392 8.25758 Molecular weight = 322.11amu Principal moments of inertia in cm(-1) A = 0.016372 B = 0.003281 C = 0.002800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1709.819517 B = 8532.706061 C = 9999.252601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C 0.243 3.757 3 N -0.509 5.509 4 C -0.017 4.017 5 C -0.050 4.050 6 C -0.129 4.129 7 C 0.184 3.816 8 N -0.666 5.666 9 C 0.562 3.438 10 O -0.549 6.549 11 C -0.282 4.282 12 C -0.052 4.052 13 C -0.235 4.235 14 C -0.090 4.090 15 C -0.176 4.176 16 C 0.117 3.883 17 C -0.453 4.453 18 H 0.085 0.915 19 C 0.034 3.966 20 N -0.817 5.817 21 Si 0.976 3.024 22 H -0.270 1.270 23 H -0.256 1.256 24 H -0.266 1.266 25 C -0.124 4.124 26 C 0.016 3.984 27 O -0.218 6.218 28 H 0.117 0.883 29 H 0.117 0.883 30 H 0.116 0.884 31 H 0.146 0.854 32 H 0.135 0.865 33 H 0.422 0.578 34 H 0.136 0.864 35 H 0.134 0.866 36 H 0.120 0.880 37 H 0.102 0.898 38 H 0.290 0.710 39 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.884 -4.875 -5.047 18.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.032 3.968 3 N -0.239 5.239 4 C -0.128 4.128 5 C -0.069 4.069 6 C -0.150 4.150 7 C 0.088 3.912 8 N -0.313 5.313 9 C 0.358 3.642 10 O -0.428 6.428 11 C -0.287 4.287 12 C -0.070 4.070 13 C -0.254 4.254 14 C -0.109 4.109 15 C -0.195 4.195 16 C 0.113 3.887 17 C -0.481 4.481 18 H 0.103 0.897 19 C -0.182 4.182 20 N -0.443 5.443 21 Si 0.798 3.202 22 H -0.194 1.194 23 H -0.180 1.180 24 H -0.191 1.191 25 C -0.146 4.146 26 C -0.035 4.035 27 O -0.110 6.110 28 H 0.135 0.865 29 H 0.135 0.865 30 H 0.135 0.865 31 H 0.164 0.836 32 H 0.152 0.848 33 H 0.262 0.738 34 H 0.154 0.846 35 H 0.152 0.848 36 H 0.138 0.862 37 H 0.120 0.880 38 H 0.101 0.899 39 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -16.826 -3.446 -4.674 17.800 hybrid contribution 0.906 -0.138 0.303 0.965 sum -15.920 -3.584 -4.370 16.894 Atomic orbital electron populations 1.20747 0.76886 1.07222 1.06800 1.27616 0.98271 0.77318 0.93589 1.70560 1.00868 1.30357 1.22128 1.20010 0.92520 0.91966 1.08339 1.20003 0.87973 1.00839 0.98135 1.21000 0.98820 0.93547 1.01614 1.17439 0.85208 0.91154 0.97400 1.43384 1.08302 1.27648 1.51960 1.18587 0.83505 0.85200 0.76877 1.90681 1.82620 1.22492 1.47009 1.19579 0.96461 1.02083 1.10531 1.21092 0.97654 0.92409 0.95879 1.20812 0.94627 1.03094 1.06869 1.21213 0.98488 0.95387 0.95814 1.21331 0.98856 0.95544 1.03817 1.17836 0.90814 0.91915 0.88160 1.20227 0.96216 1.04029 1.27632 0.89692 1.26778 0.93740 1.01732 0.95937 1.69736 1.02741 1.37351 1.34485 0.85235 0.79260 0.77269 0.78445 1.19389 1.17969 1.19130 1.19459 0.85537 1.01147 1.08458 1.19929 0.84227 0.94022 1.05322 1.84472 1.14670 1.36786 1.75094 0.86526 0.86492 0.86537 0.83583 0.84769 0.73787 0.84602 0.84840 0.86237 0.88041 0.89891 0.81723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.54 10.51 71.23 0.75 0.21 16 2 C 0.24 5.46 8.24 88.39 0.73 6.19 16 3 N -0.51 -14.89 11.34 -296.12 -3.36 -18.25 16 4 C -0.02 -0.55 7.24 39.34 0.28 -0.27 16 5 C -0.05 -1.63 10.04 22.22 0.22 -1.41 16 6 C -0.13 -4.57 8.61 22.15 0.19 -4.38 16 7 C 0.18 6.07 6.28 38.21 0.24 6.31 16 8 N -0.67 -22.24 5.28 -306.35 -1.62 -23.85 16 9 C 0.56 24.87 7.55 86.65 0.65 25.52 16 10 O -0.55 -28.16 11.02 -4.13 -0.05 -28.21 16 11 C -0.28 -13.01 5.92 -19.70 -0.12 -13.13 16 12 C -0.05 -1.93 9.53 22.51 0.21 -1.72 16 13 C -0.24 -8.64 10.03 22.40 0.22 -8.42 16 14 C -0.09 -3.75 10.01 22.26 0.22 -3.53 16 15 C -0.18 -8.78 8.62 22.72 0.20 -8.58 16 16 C 0.12 6.19 5.52 -21.11 -0.12 6.07 16 17 C -0.45 -25.22 7.72 23.41 0.18 -25.04 16 18 H 0.09 4.99 5.85 -2.91 -0.02 4.97 16 19 C 0.03 1.75 5.26 85.37 0.45 2.20 16 20 N -0.82 -42.54 11.08 21.88 0.24 -42.30 16 21 Si 0.98 40.90 29.57 68.60 2.03 42.93 16 22 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 23 H -0.26 -9.86 7.11 99.48 0.71 -9.16 16 24 H -0.27 -10.76 7.11 99.48 0.71 -10.06 16 25 C -0.12 -3.48 9.98 22.44 0.22 -3.26 16 26 C 0.02 0.47 7.43 22.87 0.17 0.64 16 27 O -0.22 -5.62 10.78 -10.52 -0.11 -5.74 16 28 H 0.12 0.67 8.14 -2.39 -0.02 0.65 16 29 H 0.12 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.12 0.51 8.14 -2.38 -0.02 0.49 16 31 H 0.15 4.24 8.06 -2.91 -0.02 4.22 16 32 H 0.13 5.39 6.24 -2.91 -0.02 5.38 16 33 H 0.42 10.86 6.87 -92.70 -0.64 10.22 16 34 H 0.14 3.73 6.42 -2.91 -0.02 3.71 16 35 H 0.13 3.87 8.06 -2.91 -0.02 3.85 16 36 H 0.12 4.23 8.06 -2.91 -0.02 4.21 16 37 H 0.10 5.31 6.53 -2.91 -0.02 5.29 16 38 H 0.29 13.61 8.29 -92.71 -0.77 12.84 16 39 H 0.17 3.54 8.06 -2.91 -0.02 3.52 16 Total: -1.00 -70.47 335.73 2.35 -68.12 By element: Atomic # 1 Polarization: 29.40 SS G_CDS: 0.49 Total: 29.89 kcal Atomic # 6 Polarization: -27.31 SS G_CDS: 4.72 Total: -22.59 kcal Atomic # 7 Polarization: -79.67 SS G_CDS: -4.73 Total: -84.40 kcal Atomic # 8 Polarization: -33.79 SS G_CDS: -0.16 Total: -33.94 kcal Atomic # 14 Polarization: 40.90 SS G_CDS: 2.03 Total: 42.93 kcal Total: -70.47 2.35 -68.12 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001629484574.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.006 kcal (2) G-P(sol) polarization free energy of solvation -70.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.120 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds