Wall clock time and date at job start Tue Mar 31 2020 14:43:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 S 1.81397 * 109.47527 * 2 1 4 4 C 1.81404 * 103.00143 * 179.97438 * 3 2 1 5 5 C 1.50701 * 109.47098 * 179.97438 * 4 3 2 6 6 C 1.38352 * 119.85535 * 269.73053 * 5 4 3 7 7 C 1.37957 * 120.14512 * 179.72611 * 6 5 4 8 8 C 1.39580 * 119.85343 * 0.54518 * 7 6 5 9 9 C 1.47843 * 120.14353 * 179.70877 * 8 7 6 10 10 O 1.21553 * 119.99762 * 180.02562 * 9 8 7 11 11 N 1.34767 * 120.00348 * 0.02562 * 9 8 7 12 12 C 1.46504 * 120.00505 * 180.02562 * 11 9 8 13 13 C 1.50695 * 109.47685 * 180.02562 * 12 11 9 14 14 O 1.21290 * 119.99646 * 359.97438 * 13 12 11 15 15 N 1.34772 * 120.00301 * 180.02562 * 13 12 11 16 16 C 1.37102 * 120.00171 * 179.97438 * 15 13 12 17 17 H 1.07996 * 119.99918 * 359.97438 * 16 15 13 18 18 C 1.38947 * 119.99923 * 179.97438 * 16 15 13 19 19 N 1.31411 * 119.99816 * 179.97438 * 18 16 15 20 20 Si 1.86798 * 119.99998 * 0.02562 * 18 16 15 21 21 H 1.48501 * 109.47528 * 89.99996 * 20 18 16 22 22 H 1.48503 * 109.46887 * 209.99985 * 20 18 16 23 23 H 1.48498 * 109.47449 * 329.99625 * 20 18 16 24 24 C 1.39577 * 119.70869 * 359.72546 * 8 7 6 25 25 C 1.37959 * 119.85188 * 359.97438 * 24 8 7 26 26 H 1.08996 * 109.46730 * 300.00157 * 1 2 3 27 27 H 1.08998 * 109.46901 * 59.99649 * 1 2 3 28 28 H 1.08998 * 109.47366 * 179.97438 * 1 2 3 29 29 H 1.09007 * 109.47172 * 240.00060 * 2 1 3 30 30 H 1.09007 * 109.46944 * 120.00544 * 2 1 3 31 31 H 1.09002 * 109.47124 * 60.00087 * 4 3 2 32 32 H 1.09001 * 109.46975 * 300.00209 * 4 3 2 33 33 H 1.08006 * 119.92574 * 359.97438 * 6 5 4 34 34 H 1.08005 * 120.07473 * 180.25144 * 7 6 5 35 35 H 0.97005 * 120.00200 * 0.02562 * 11 9 8 36 36 H 1.09000 * 109.46831 * 300.00377 * 12 11 9 37 37 H 1.08993 * 109.46822 * 59.99872 * 12 11 9 38 38 H 0.97003 * 119.99874 * 359.97438 * 15 13 12 39 39 H 0.96999 * 119.99813 * 180.02562 * 19 18 16 40 40 H 1.08001 * 120.07314 * 179.97438 * 24 8 7 41 41 H 1.08002 * 119.92451 * 179.97438 * 25 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1347 1.7102 0.0000 4 6 3.9372 1.5057 0.0008 5 6 4.5965 2.8608 0.0002 6 6 4.9034 3.4769 -1.1999 7 6 5.5019 4.7199 -1.2074 8 6 5.8081 5.3509 -0.0007 9 6 6.4553 6.6801 -0.0013 10 8 6.7213 7.2270 1.0512 11 7 6.7504 7.2855 -1.1686 12 6 7.3923 8.6024 -1.1692 13 6 7.6117 9.0538 -2.5901 14 8 7.2663 8.3449 -3.5117 15 7 8.1925 10.2446 -2.8369 16 6 8.3926 10.6550 -4.1297 17 1 8.0850 10.0239 -4.9503 18 6 8.9909 11.8830 -4.3840 19 7 9.1831 12.2761 -5.6231 20 14 9.5235 12.9743 -2.9646 21 1 10.9232 12.6502 -2.5890 22 1 9.4387 14.3986 -3.3765 23 1 8.6320 12.7420 -1.8000 24 6 5.5010 4.7213 1.2066 25 6 4.8969 3.4810 1.2000 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5140 0.8900 31 1 4.2407 0.9540 -0.8890 32 1 4.2399 0.9542 0.8910 33 1 4.6702 2.9854 -2.1330 34 1 5.7372 5.2016 -2.1450 35 1 6.5379 6.8492 -2.0085 36 1 6.7515 9.3191 -0.6555 37 1 8.3515 8.5393 -0.6555 38 1 8.4691 10.8114 -2.0998 39 1 9.6012 13.1332 -5.8007 40 1 5.7358 5.2040 2.1438 41 1 4.6591 2.9926 2.1335 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344121593.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:43:02 Heat of formation + Delta-G solvation = -54.324797 kcal Electronic energy + Delta-G solvation = -22896.500096 eV Core-core repulsion = 19288.262490 eV Total energy + Delta-G solvation = -3608.237606 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 322.114 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.30158 -38.91729 -38.09890 -34.62512 -33.86726 -33.24512 -33.18033 -31.82528 -31.20260 -28.77777 -27.15369 -24.53123 -23.96830 -22.88431 -22.36967 -20.25794 -19.70577 -18.85455 -17.85410 -16.74823 -16.29864 -15.78372 -15.52960 -15.42342 -15.31551 -15.18253 -15.13364 -14.82586 -14.61408 -14.05778 -13.84942 -13.61700 -13.18463 -13.12493 -12.97824 -12.82059 -12.50699 -12.25822 -12.19968 -12.04001 -11.88981 -11.64312 -11.27106 -11.25079 -10.65702 -10.40217 -10.08466 -9.94407 -9.71941 -9.21311 -9.09265 -8.82884 -8.80596 -8.32576 -8.07121 -6.42538 -3.95259 0.38874 1.16422 1.41170 2.15262 2.87830 2.98491 3.03120 3.10976 3.20874 3.52991 3.75568 4.02097 4.19409 4.35650 4.42920 4.49341 4.50086 4.68821 4.74975 4.86565 4.90742 5.00786 5.12268 5.15968 5.22809 5.31171 5.32756 5.54321 5.61333 5.64369 5.74989 5.77284 5.78031 6.05721 6.17208 6.20746 6.47786 6.62834 7.41884 7.66510 7.97981 8.27704 8.43362 8.79587 9.27662 9.60664 10.69525 Molecular weight = 322.11amu Principal moments of inertia in cm(-1) A = 0.028524 B = 0.001943 C = 0.001859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 981.402185 B =14404.406730 C =15055.612765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.095 4.095 3 S -0.248 6.248 4 C -0.048 4.048 5 C -0.057 4.057 6 C -0.107 4.107 7 C -0.082 4.082 8 C -0.122 4.122 9 C 0.555 3.445 10 O -0.545 6.545 11 N -0.702 5.702 12 C 0.106 3.894 13 C 0.437 3.563 14 O -0.579 6.579 15 N -0.575 5.575 16 C -0.311 4.311 17 H 0.122 0.878 18 C 0.046 3.954 19 N -0.873 5.873 20 Si 0.879 3.121 21 H -0.269 1.269 22 H -0.274 1.274 23 H -0.267 1.267 24 C -0.060 4.060 25 C -0.111 4.111 26 H 0.065 0.935 27 H 0.065 0.935 28 H 0.070 0.930 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.092 0.908 32 H 0.092 0.908 33 H 0.131 0.869 34 H 0.135 0.865 35 H 0.412 0.588 36 H 0.087 0.913 37 H 0.087 0.913 38 H 0.375 0.625 39 H 0.276 0.724 40 H 0.139 0.861 41 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.646 -22.839 13.970 29.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.243 4.243 3 S -0.019 6.019 4 C -0.195 4.195 5 C -0.058 4.058 6 C -0.127 4.127 7 C -0.101 4.101 8 C -0.126 4.126 9 C 0.342 3.658 10 O -0.424 6.424 11 N -0.356 5.356 12 C -0.022 4.022 13 C 0.223 3.777 14 O -0.464 6.464 15 N -0.212 5.212 16 C -0.439 4.439 17 H 0.140 0.860 18 C -0.159 4.159 19 N -0.512 5.512 20 Si 0.705 3.295 21 H -0.194 1.194 22 H -0.200 1.200 23 H -0.192 1.192 24 C -0.079 4.079 25 C -0.131 4.131 26 H 0.084 0.916 27 H 0.084 0.916 28 H 0.089 0.911 29 H 0.099 0.901 30 H 0.099 0.901 31 H 0.111 0.889 32 H 0.110 0.890 33 H 0.149 0.851 34 H 0.153 0.847 35 H 0.251 0.749 36 H 0.105 0.895 37 H 0.105 0.895 38 H 0.208 0.792 39 H 0.086 0.914 40 H 0.157 0.843 41 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -12.217 -21.833 13.892 28.616 hybrid contribution 1.146 -0.259 0.495 1.275 sum -11.071 -22.091 14.387 28.593 Atomic orbital electron populations 1.21507 0.92116 1.02565 1.03370 1.23351 1.00396 0.95744 1.04848 1.87384 1.04278 1.12212 1.98067 1.22320 0.93696 0.97588 1.05927 1.19358 0.97906 0.94601 0.93954 1.20968 0.98917 0.95152 0.97640 1.21446 0.96247 0.94753 0.97635 1.20009 1.02844 0.95232 0.94491 1.18216 0.78734 0.85110 0.83710 1.90753 1.54328 1.66126 1.31241 1.45624 1.60907 1.19763 1.09302 1.21011 0.99173 0.85134 0.96879 1.19607 0.84775 0.83732 0.89562 1.90535 1.55541 1.54924 1.45391 1.42118 1.53771 1.16798 1.08548 1.19445 1.37971 1.03625 0.82889 0.86048 1.25066 0.97072 0.96982 0.96741 1.69617 1.41704 1.21708 1.18177 0.86670 0.79724 0.81185 0.81916 1.19379 1.19950 1.19214 1.21242 0.94903 0.93852 0.97879 1.20972 0.99315 0.95235 0.97536 0.91624 0.91566 0.91080 0.90086 0.90147 0.88909 0.88983 0.85080 0.84714 0.74873 0.89486 0.89480 0.79211 0.91358 0.84339 0.85212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.68 9.92 37.16 0.37 -0.31 16 2 C -0.10 -0.52 6.66 37.16 0.25 -0.28 16 3 S -0.25 -2.07 21.72 -107.50 -2.33 -4.41 16 4 C -0.05 -0.34 6.06 36.01 0.22 -0.12 16 5 C -0.06 -0.52 5.15 -104.53 -0.54 -1.05 16 6 C -0.11 -1.04 9.68 -39.64 -0.38 -1.43 16 7 C -0.08 -0.93 9.54 -39.18 -0.37 -1.31 16 8 C -0.12 -1.59 5.87 -104.97 -0.62 -2.21 16 9 C 0.56 8.79 7.77 -12.33 -0.10 8.70 16 10 O -0.55 -9.98 16.35 5.32 0.09 -9.89 16 11 N -0.70 -11.39 5.48 -62.44 -0.34 -11.73 16 12 C 0.11 1.83 6.15 -5.19 -0.03 1.80 16 13 C 0.44 9.56 7.85 -10.99 -0.09 9.47 16 14 O -0.58 -14.48 15.24 5.55 0.08 -14.40 16 15 N -0.57 -13.29 5.09 -10.97 -0.06 -13.34 16 16 C -0.31 -8.52 10.16 -14.93 -0.15 -8.67 16 17 H 0.12 3.79 7.39 -52.49 -0.39 3.40 16 18 C 0.05 1.22 5.50 -17.47 -0.10 1.12 16 19 N -0.87 -24.82 13.96 55.50 0.77 -24.04 16 20 Si 0.88 18.92 27.74 -169.99 -4.71 14.20 16 21 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 22 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 23 H -0.27 -5.26 6.52 56.52 0.37 -4.89 16 24 C -0.06 -0.69 9.60 -39.18 -0.38 -1.07 16 25 C -0.11 -1.05 9.68 -39.64 -0.38 -1.43 16 26 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 28 H 0.07 0.25 8.14 -51.93 -0.42 -0.18 16 29 H 0.08 0.39 8.14 -51.92 -0.42 -0.04 16 30 H 0.08 0.37 8.14 -51.92 -0.42 -0.05 16 31 H 0.09 0.54 8.08 -51.92 -0.42 0.12 16 32 H 0.09 0.52 8.08 -51.92 -0.42 0.10 16 33 H 0.13 1.04 8.06 -52.48 -0.42 0.61 16 34 H 0.14 1.45 6.41 -52.48 -0.34 1.12 16 35 H 0.41 6.52 5.47 -40.82 -0.22 6.29 16 36 H 0.09 1.41 8.14 -51.93 -0.42 0.99 16 37 H 0.09 1.40 8.14 -51.93 -0.42 0.97 16 38 H 0.37 7.63 5.76 -40.82 -0.24 7.40 16 39 H 0.28 7.23 8.31 -40.82 -0.34 6.89 16 40 H 0.14 1.56 7.65 -52.49 -0.40 1.16 16 41 H 0.13 0.94 8.06 -52.49 -0.42 0.52 16 LS Contribution 366.16 15.07 5.52 5.52 Total: -1.00 -32.70 366.16 -8.68 -41.38 By element: Atomic # 1 Polarization: 18.89 SS G_CDS: -5.40 Total: 13.49 kcal Atomic # 6 Polarization: 5.52 SS G_CDS: -2.30 Total: 3.22 kcal Atomic # 7 Polarization: -49.49 SS G_CDS: 0.38 Total: -49.11 kcal Atomic # 8 Polarization: -24.46 SS G_CDS: 0.17 Total: -24.29 kcal Atomic # 14 Polarization: 18.92 SS G_CDS: -4.71 Total: 14.20 kcal Atomic # 16 Polarization: -2.07 SS G_CDS: -2.33 Total: -4.41 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -32.70 -8.68 -41.38 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344121593.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.943 kcal (2) G-P(sol) polarization free energy of solvation -32.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.382 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds