Wall clock time and date at job start Tue Mar 31 2020 12:50:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86806 * 119.99913 * 2 1 4 4 H 1.48507 * 109.46954 * 274.84443 * 3 2 1 5 5 H 1.48497 * 109.46822 * 34.84274 * 3 2 1 6 6 H 1.48500 * 109.46812 * 154.84480 * 3 2 1 7 7 C 1.37876 * 119.99966 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00477 * 5.16696 * 7 2 1 9 9 C 1.50705 * 119.99652 * 185.17336 * 7 2 1 10 10 O 1.45202 * 112.85089 * 65.04483 * 9 7 2 11 11 C 1.34231 * 116.99839 * 57.47491 * 10 9 7 12 12 O 1.20820 * 119.99928 * 4.25123 * 11 10 9 13 13 C 1.50704 * 119.99493 * 184.26228 * 11 10 9 14 14 H 1.08997 * 115.55002 * 331.30824 * 13 11 10 15 15 C 1.53003 * 117.51680 * 117.01440 * 13 11 10 16 16 C 1.53002 * 117.49193 * 185.64333 * 13 11 10 17 17 H 1.08999 * 117.50196 * 359.97438 * 16 13 11 18 18 C 1.50704 * 117.49538 * 144.99695 * 16 13 11 19 19 C 1.38414 * 120.02409 * 50.89681 * 18 16 13 20 20 F 1.35105 * 120.01689 * 359.96136 * 19 18 16 21 21 C 1.38479 * 119.97439 * 179.97438 * 19 18 16 22 22 C 1.38208 * 120.02377 * 0.02562 * 21 19 18 23 23 C 1.38209 * 120.04732 * 0.25062 * 22 21 19 24 24 C 1.38415 * 120.02351 * 230.87814 * 18 16 13 25 25 F 1.35097 * 120.01299 * 0.04135 * 24 18 16 26 26 C 1.53786 * 113.61030 * 196.23884 * 9 7 2 27 27 C 1.53960 * 87.01652 * 89.22730 * 26 9 7 28 28 C 1.53774 * 113.61415 * 293.84434 * 9 7 2 29 29 H 0.96998 * 120.00458 * 359.97438 * 1 2 3 30 30 H 1.08993 * 117.49848 * 359.97438 * 15 13 11 31 31 H 1.08995 * 117.49616 * 214.96411 * 15 13 11 32 32 H 1.08001 * 119.98962 * 180.02562 * 21 19 18 33 33 H 1.07999 * 119.97428 * 179.97438 * 22 21 19 34 34 H 1.08002 * 119.98207 * 179.72134 * 23 22 21 35 35 H 1.09001 * 113.61268 * 203.74264 * 26 9 7 36 36 H 1.08998 * 113.61650 * 334.65349 * 26 9 7 37 37 H 1.08992 * 113.53891 * 270.80692 * 27 26 9 38 38 H 1.09007 * 113.66269 * 139.92981 * 27 26 9 39 39 H 1.09003 * 113.61686 * 25.35480 * 28 9 7 40 40 H 1.09000 * 113.61709 * 156.16604 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.3942 2.1056 -1.3952 5 1 1.5014 2.6209 0.7999 6 1 3.5941 1.4128 0.5951 7 6 2.0045 -1.1940 -0.0005 8 1 1.4679 -2.1274 -0.0852 9 6 3.5069 -1.1967 0.1172 10 8 3.9733 -0.6889 1.3951 11 6 3.5288 -1.3126 2.4975 12 8 2.8372 -2.2981 2.3966 13 6 3.8923 -0.7833 3.8609 14 1 4.8421 -0.2518 3.9209 15 6 2.7520 -0.2959 4.7571 16 6 3.4674 -1.6103 5.0759 17 1 2.9247 -2.5369 4.8892 18 6 4.3941 -1.6276 6.2643 19 6 4.8611 -0.4379 6.7957 20 9 4.4872 0.7395 6.2488 21 6 5.7122 -0.4550 7.8880 22 6 6.0956 -1.6594 8.4472 23 6 5.6343 -2.8480 7.9138 24 6 4.7784 -2.8332 6.8254 25 9 4.3236 -3.9951 6.3074 26 6 4.1542 -2.5313 -0.2888 27 6 4.2162 -1.9729 -1.7222 28 6 4.2206 -0.5701 -1.0923 29 1 -0.4851 0.8400 0.0004 30 1 1.7387 -0.3577 4.3605 31 1 2.9516 0.5562 5.4067 32 1 6.0764 0.4731 8.3031 33 1 6.7596 -1.6718 9.2988 34 1 5.9382 -3.7887 8.3488 35 1 5.1345 -2.6951 0.1587 36 1 3.4902 -3.3890 -0.1817 37 1 3.3236 -2.1845 -2.3108 38 1 5.1391 -2.2184 -2.2478 39 1 3.6102 0.1533 -1.6330 40 1 5.2185 -0.1953 -0.8644 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000788145708.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:50:22 Heat of formation + Delta-G solvation = -84.528247 kcal Electronic energy + Delta-G solvation = -27455.956066 eV Core-core repulsion = 23260.275602 eV Total energy + Delta-G solvation = -4195.680464 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.117 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.40921 -49.10302 -39.84446 -39.13480 -37.81496 -36.08615 -34.35043 -32.33873 -31.01227 -30.56048 -26.78841 -25.06499 -24.93161 -23.85729 -23.03909 -22.48040 -21.26512 -19.52091 -18.58197 -18.33743 -17.80454 -17.06789 -16.33523 -16.24546 -15.81566 -15.73723 -15.46956 -15.37621 -15.24744 -14.81113 -14.27217 -14.15938 -13.83451 -13.46286 -13.20633 -12.81463 -12.68695 -12.42973 -12.19104 -11.97440 -11.73242 -11.54483 -11.13658 -11.03756 -10.97363 -10.78025 -10.58043 -10.32549 -10.12768 -9.96670 -9.78755 -9.42890 -9.02571 -9.01858 -8.84152 -8.73147 -8.54601 -6.20020 -4.26229 0.66048 0.69561 2.93596 3.15306 3.25909 3.36729 3.51250 3.63941 3.67179 4.08972 4.16477 4.32025 4.38771 4.48074 4.52183 4.82826 4.92691 5.07717 5.12248 5.29051 5.47672 5.50112 5.52270 5.57911 5.67378 5.71647 5.76426 5.83317 5.85791 5.96181 6.15202 6.27002 6.28323 6.39130 6.40922 6.48888 6.65403 6.85418 6.95449 7.26692 7.50080 7.84299 8.41377 8.87835 9.04337 9.41309 10.90286 Molecular weight = 322.12amu Principal moments of inertia in cm(-1) A = 0.017767 B = 0.003990 C = 0.003686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1575.567913 B = 7015.533467 C = 7594.276719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.084 3.916 3 Si 0.860 3.140 4 H -0.279 1.279 5 H -0.290 1.290 6 H -0.234 1.234 7 C -0.504 4.504 8 H 0.085 0.915 9 C 0.199 3.801 10 O -0.365 6.365 11 C 0.490 3.510 12 O -0.489 6.489 13 C -0.146 4.146 14 H 0.124 0.876 15 C -0.154 4.154 16 C -0.100 4.100 17 H 0.136 0.864 18 C -0.114 4.114 19 C 0.129 3.871 20 F -0.120 7.120 21 C -0.162 4.162 22 C -0.069 4.069 23 C -0.162 4.162 24 C 0.138 3.862 25 F -0.124 7.124 26 C -0.146 4.146 27 C -0.124 4.124 28 C -0.131 4.131 29 H 0.267 0.733 30 H 0.110 0.890 31 H 0.131 0.869 32 H 0.143 0.857 33 H 0.143 0.857 34 H 0.143 0.857 35 H 0.063 0.937 36 H 0.069 0.931 37 H 0.086 0.914 38 H 0.057 0.943 39 H 0.068 0.932 40 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.312 -0.752 15.990 20.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.121 4.121 3 Si 0.686 3.314 4 H -0.205 1.205 5 H -0.217 1.217 6 H -0.156 1.156 7 C -0.541 4.541 8 H 0.103 0.897 9 C 0.165 3.835 10 O -0.283 6.283 11 C 0.331 3.669 12 O -0.376 6.376 13 C -0.165 4.165 14 H 0.142 0.858 15 C -0.191 4.191 16 C -0.118 4.118 17 H 0.154 0.846 18 C -0.116 4.116 19 C 0.109 3.891 20 F -0.099 7.099 21 C -0.180 4.180 22 C -0.088 4.088 23 C -0.181 4.181 24 C 0.118 3.882 25 F -0.102 7.102 26 C -0.184 4.184 27 C -0.161 4.161 28 C -0.169 4.169 29 H 0.076 0.924 30 H 0.128 0.872 31 H 0.148 0.852 32 H 0.161 0.839 33 H 0.161 0.839 34 H 0.161 0.839 35 H 0.082 0.918 36 H 0.088 0.912 37 H 0.104 0.896 38 H 0.076 0.924 39 H 0.086 0.914 40 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 12.916 -0.966 15.847 20.467 hybrid contribution 0.077 0.896 -0.294 0.946 sum 12.994 -0.070 15.553 20.267 Atomic orbital electron populations 1.69924 1.06460 1.27392 1.47786 1.25000 0.94682 0.99348 0.93083 0.87128 0.82676 0.83195 0.78398 1.20491 1.21691 1.15639 1.20800 0.87100 0.95195 1.50961 0.89707 1.21685 0.94657 0.90614 0.76547 1.86526 1.67076 1.58596 1.16119 1.21678 0.77758 0.81951 0.85518 1.90599 1.34166 1.25280 1.87507 1.21922 1.01960 1.04596 0.88007 0.85774 1.23751 0.97427 0.97198 1.00707 1.20939 1.00383 0.99138 0.91326 0.84576 1.19272 1.01664 0.91438 0.99193 1.17236 0.97419 0.80341 0.94089 1.91383 1.88990 1.44963 1.84529 1.21203 0.99939 1.00278 0.96622 1.20821 0.98281 0.90512 0.99139 1.21215 0.99608 1.00448 0.96833 1.17162 0.96243 0.80782 0.94014 1.91560 1.87114 1.45674 1.85877 1.23363 0.99588 0.99320 0.96124 1.22509 1.01030 0.96436 0.96145 1.23260 0.99554 0.97247 0.96836 0.92362 0.87151 0.85177 0.83915 0.83928 0.83899 0.91825 0.91226 0.89554 0.92422 0.91377 0.91276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.86 13.96 55.43 0.77 -26.09 16 2 C 0.08 2.43 5.47 -17.82 -0.10 2.34 16 3 Si 0.86 21.57 24.63 -169.99 -4.19 17.39 16 4 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 5 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 6 H -0.23 -5.67 5.55 56.52 0.31 -5.35 16 7 C -0.50 -14.42 7.34 -34.44 -0.25 -14.68 16 8 H 0.08 2.71 8.05 -52.49 -0.42 2.28 16 9 C 0.20 4.88 0.24 -90.96 -0.02 4.86 16 10 O -0.37 -8.86 8.11 -39.26 -0.32 -9.18 16 11 C 0.49 11.36 7.30 36.01 0.26 11.62 16 12 O -0.49 -12.67 14.72 -18.75 -0.28 -12.94 16 13 C -0.15 -2.65 5.57 -91.77 -0.51 -3.16 16 14 H 0.12 2.03 7.87 -51.93 -0.41 1.63 16 15 C -0.15 -2.54 9.37 -26.72 -0.25 -2.79 16 16 C -0.10 -1.61 5.39 -91.76 -0.49 -2.10 16 17 H 0.14 2.40 7.24 -51.93 -0.38 2.03 16 18 C -0.11 -1.50 5.65 -104.49 -0.59 -2.09 16 19 C 0.13 1.47 7.04 -39.43 -0.28 1.20 16 20 F -0.12 -1.49 12.91 2.25 0.03 -1.46 16 21 C -0.16 -1.35 10.03 -39.50 -0.40 -1.75 16 22 C -0.07 -0.49 10.04 -39.60 -0.40 -0.88 16 23 C -0.16 -1.39 10.02 -39.51 -0.40 -1.79 16 24 C 0.14 1.65 7.25 -39.43 -0.29 1.37 16 25 F -0.12 -1.70 16.51 2.25 0.04 -1.67 16 26 C -0.15 -3.16 6.92 -25.82 -0.18 -3.34 16 27 C -0.12 -2.40 7.81 -25.82 -0.20 -2.60 16 28 C -0.13 -2.82 6.03 -25.92 -0.16 -2.98 16 29 H 0.27 7.62 8.31 -40.82 -0.34 7.28 16 30 H 0.11 1.99 8.14 -51.93 -0.42 1.57 16 31 H 0.13 1.86 5.14 -51.93 -0.27 1.59 16 32 H 0.14 0.86 8.06 -52.49 -0.42 0.44 16 33 H 0.14 0.53 8.06 -52.49 -0.42 0.11 16 34 H 0.14 0.89 8.06 -52.49 -0.42 0.47 16 35 H 0.06 1.27 8.14 -51.93 -0.42 0.84 16 36 H 0.07 1.58 8.09 -51.93 -0.42 1.16 16 37 H 0.09 1.72 8.14 -51.93 -0.42 1.30 16 38 H 0.06 0.93 8.14 -51.92 -0.42 0.50 16 39 H 0.07 1.52 5.72 -51.93 -0.30 1.22 16 40 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 LS Contribution 337.34 15.07 5.08 5.08 Total: -1.00 -33.04 337.34 -7.90 -40.94 By element: Atomic # 1 Polarization: 9.52 SS G_CDS: -4.80 Total: 4.72 kcal Atomic # 6 Polarization: -12.55 SS G_CDS: -4.25 Total: -16.79 kcal Atomic # 7 Polarization: -26.86 SS G_CDS: 0.77 Total: -26.09 kcal Atomic # 8 Polarization: -21.53 SS G_CDS: -0.59 Total: -22.12 kcal Atomic # 9 Polarization: -3.19 SS G_CDS: 0.07 Total: -3.13 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -4.19 Total: 17.39 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -33.04 -7.90 -40.94 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000788145708.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.592 kcal (2) G-P(sol) polarization free energy of solvation -33.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds