Wall clock time and date at job start Tue Mar 31 2020 12:50:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86806 * 119.99913 * 2 1 4 4 H 1.48507 * 109.46954 * 274.84443 * 3 2 1 5 5 H 1.48497 * 109.46822 * 34.84274 * 3 2 1 6 6 H 1.48500 * 109.46812 * 154.84480 * 3 2 1 7 7 C 1.37876 * 119.99966 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00477 * 5.16696 * 7 2 1 9 9 C 1.50705 * 119.99652 * 185.17336 * 7 2 1 10 10 O 1.45202 * 112.85089 * 65.04483 * 9 7 2 11 11 C 1.34231 * 116.99839 * 57.47491 * 10 9 7 12 12 O 1.20820 * 119.99928 * 4.25123 * 11 10 9 13 13 C 1.50704 * 119.99493 * 184.26228 * 11 10 9 14 14 H 1.08997 * 115.55002 * 331.30824 * 13 11 10 15 15 C 1.53003 * 117.51680 * 117.01440 * 13 11 10 16 16 C 1.53002 * 117.49193 * 185.64333 * 13 11 10 17 17 H 1.08999 * 117.50196 * 359.97438 * 16 13 11 18 18 C 1.50704 * 117.49538 * 144.99695 * 16 13 11 19 19 C 1.38414 * 120.02409 * 50.89681 * 18 16 13 20 20 F 1.35105 * 120.01689 * 359.96136 * 19 18 16 21 21 C 1.38479 * 119.97439 * 179.97438 * 19 18 16 22 22 C 1.38208 * 120.02377 * 0.02562 * 21 19 18 23 23 C 1.38209 * 120.04732 * 0.25062 * 22 21 19 24 24 C 1.38415 * 120.02351 * 230.87814 * 18 16 13 25 25 F 1.35097 * 120.01299 * 0.04135 * 24 18 16 26 26 C 1.53786 * 113.61030 * 196.23884 * 9 7 2 27 27 C 1.53960 * 87.01652 * 89.22730 * 26 9 7 28 28 C 1.53774 * 113.61415 * 293.84434 * 9 7 2 29 29 H 0.96998 * 120.00458 * 359.97438 * 1 2 3 30 30 H 1.08993 * 117.49848 * 359.97438 * 15 13 11 31 31 H 1.08995 * 117.49616 * 214.96411 * 15 13 11 32 32 H 1.08001 * 119.98962 * 180.02562 * 21 19 18 33 33 H 1.07999 * 119.97428 * 179.97438 * 22 21 19 34 34 H 1.08002 * 119.98207 * 179.72134 * 23 22 21 35 35 H 1.09001 * 113.61268 * 203.74264 * 26 9 7 36 36 H 1.08998 * 113.61650 * 334.65349 * 26 9 7 37 37 H 1.08992 * 113.53891 * 270.80692 * 27 26 9 38 38 H 1.09007 * 113.66269 * 139.92981 * 27 26 9 39 39 H 1.09003 * 113.61686 * 25.35480 * 28 9 7 40 40 H 1.09000 * 113.61709 * 156.16604 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.3942 2.1056 -1.3952 5 1 1.5014 2.6209 0.7999 6 1 3.5941 1.4128 0.5951 7 6 2.0045 -1.1940 -0.0005 8 1 1.4679 -2.1274 -0.0852 9 6 3.5069 -1.1967 0.1172 10 8 3.9733 -0.6889 1.3951 11 6 3.5288 -1.3126 2.4975 12 8 2.8372 -2.2981 2.3966 13 6 3.8923 -0.7833 3.8609 14 1 4.8421 -0.2518 3.9209 15 6 2.7520 -0.2959 4.7571 16 6 3.4674 -1.6103 5.0759 17 1 2.9247 -2.5369 4.8892 18 6 4.3941 -1.6276 6.2643 19 6 4.8611 -0.4379 6.7957 20 9 4.4872 0.7395 6.2488 21 6 5.7122 -0.4550 7.8880 22 6 6.0956 -1.6594 8.4472 23 6 5.6343 -2.8480 7.9138 24 6 4.7784 -2.8332 6.8254 25 9 4.3236 -3.9951 6.3074 26 6 4.1542 -2.5313 -0.2888 27 6 4.2162 -1.9729 -1.7222 28 6 4.2206 -0.5701 -1.0923 29 1 -0.4851 0.8400 0.0004 30 1 1.7387 -0.3577 4.3605 31 1 2.9516 0.5562 5.4067 32 1 6.0764 0.4731 8.3031 33 1 6.7596 -1.6718 9.2988 34 1 5.9382 -3.7887 8.3488 35 1 5.1345 -2.6951 0.1587 36 1 3.4902 -3.3890 -0.1817 37 1 3.3236 -2.1845 -2.3108 38 1 5.1391 -2.2184 -2.2478 39 1 3.6102 0.1533 -1.6330 40 1 5.2185 -0.1953 -0.8644 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000788145708.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:50:21 Heat of formation + Delta-G solvation = -103.249012 kcal Electronic energy + Delta-G solvation = -27456.767859 eV Core-core repulsion = 23260.275602 eV Total energy + Delta-G solvation = -4196.492257 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.117 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -50.28177 -50.05382 -41.58807 -40.21062 -39.31917 -37.56155 -36.25474 -34.56939 -31.89349 -31.28709 -28.82925 -26.69362 -26.66374 -24.97271 -24.23366 -23.80214 -22.40081 -21.14182 -20.53925 -19.38965 -19.07952 -18.55427 -17.61477 -17.41961 -17.26055 -17.03031 -16.89247 -16.61965 -16.39810 -16.18720 -15.69469 -15.62141 -15.26424 -15.12674 -14.89426 -14.08255 -13.80139 -13.57494 -13.49724 -13.30319 -13.25152 -12.92892 -12.88827 -12.86642 -12.46490 -12.16184 -12.02417 -11.86654 -11.84939 -11.72200 -11.71585 -11.29772 -11.06769 -10.69375 -10.58095 -9.77462 -9.77308 -8.44721 -6.56529 -0.13429 -0.04149 1.24457 1.26530 1.38463 1.52191 1.92390 2.27813 2.32909 2.78043 2.83440 2.92585 3.24070 3.37895 3.43562 3.58791 3.73927 3.80727 3.83173 3.88128 4.01882 4.11238 4.12175 4.23045 4.38621 4.56686 4.72707 4.74424 4.76947 4.80812 4.85180 4.87702 4.99951 5.05216 5.09201 5.12012 5.17293 5.20357 5.49705 5.58364 5.76307 5.81155 6.27846 6.53435 7.09906 7.18331 8.70455 Molecular weight = 322.12amu Principal moments of inertia in cm(-1) A = 0.017767 B = 0.003990 C = 0.003686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1575.567913 B = 7015.533467 C = 7594.276719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.030 3.970 3 Si 0.922 3.078 4 H -0.259 1.259 5 H -0.291 1.291 6 H -0.217 1.217 7 C -0.508 4.508 8 H 0.027 0.973 9 C 0.176 3.824 10 O -0.365 6.365 11 C 0.480 3.520 12 O -0.530 6.530 13 C -0.156 4.156 14 H 0.149 0.851 15 C -0.149 4.149 16 C -0.083 4.083 17 H 0.107 0.893 18 C -0.140 4.140 19 C 0.115 3.885 20 F -0.129 7.129 21 C -0.148 4.148 22 C -0.048 4.048 23 C -0.152 4.152 24 C 0.111 3.889 25 F -0.145 7.145 26 C -0.145 4.145 27 C -0.107 4.107 28 C -0.125 4.125 29 H 0.270 0.730 30 H 0.083 0.917 31 H 0.159 0.841 32 H 0.174 0.826 33 H 0.190 0.810 34 H 0.169 0.831 35 H 0.086 0.914 36 H 0.041 0.959 37 H 0.071 0.929 38 H 0.105 0.895 39 H 0.060 0.940 40 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.689 1.079 18.217 25.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.170 4.170 3 Si 0.745 3.255 4 H -0.184 1.184 5 H -0.218 1.218 6 H -0.139 1.139 7 C -0.545 4.545 8 H 0.045 0.955 9 C 0.142 3.858 10 O -0.283 6.283 11 C 0.324 3.676 12 O -0.420 6.420 13 C -0.175 4.175 14 H 0.166 0.834 15 C -0.185 4.185 16 C -0.101 4.101 17 H 0.125 0.875 18 C -0.142 4.142 19 C 0.096 3.904 20 F -0.108 7.108 21 C -0.167 4.167 22 C -0.065 4.065 23 C -0.170 4.170 24 C 0.092 3.908 25 F -0.124 7.124 26 C -0.183 4.183 27 C -0.144 4.144 28 C -0.162 4.162 29 H 0.079 0.921 30 H 0.102 0.898 31 H 0.176 0.824 32 H 0.192 0.808 33 H 0.207 0.793 34 H 0.187 0.813 35 H 0.105 0.895 36 H 0.060 0.940 37 H 0.090 0.910 38 H 0.123 0.877 39 H 0.078 0.922 40 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 17.310 0.857 18.067 25.036 hybrid contribution -1.298 0.173 -0.843 1.557 sum 16.012 1.030 17.225 23.540 Atomic orbital electron populations 1.70066 1.08425 1.28523 1.49944 1.25877 0.95388 1.03236 0.92536 0.86153 0.81777 0.78114 0.79490 1.18370 1.21821 1.13877 1.20804 0.89742 0.93022 1.50905 0.95488 1.21816 0.92613 0.93753 0.77647 1.86498 1.66831 1.58600 1.16328 1.22655 0.76670 0.81334 0.86951 1.90584 1.36058 1.27166 1.88172 1.21945 1.03409 1.06490 0.85672 0.83354 1.23823 0.95514 0.98905 1.00294 1.20771 1.00228 0.97438 0.91706 0.87454 1.19124 1.02939 0.93107 0.99007 1.17460 0.98475 0.79237 0.95240 1.91331 1.89238 1.45263 1.84923 1.21626 0.97971 1.02294 0.94770 1.21398 0.96989 0.88975 0.99173 1.21598 0.97777 1.02591 0.95065 1.17575 0.97872 0.79771 0.95618 1.91506 1.87680 1.46690 1.86477 1.23367 0.99699 0.97003 0.98216 1.22454 1.02755 0.94521 0.94699 1.23293 1.00436 0.98004 0.94476 0.92123 0.89828 0.82365 0.80806 0.79298 0.81319 0.89535 0.93998 0.91008 0.87656 0.92159 0.87981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -59.96 13.96 21.45 0.30 -59.67 16 2 C 0.03 1.80 5.47 84.66 0.46 2.26 16 3 Si 0.92 44.90 24.63 68.60 1.69 46.59 16 4 H -0.26 -11.72 7.11 99.48 0.71 -11.01 16 5 H -0.29 -14.14 7.11 99.48 0.71 -13.43 16 6 H -0.22 -9.88 5.55 99.48 0.55 -9.32 16 7 C -0.51 -30.71 7.34 25.60 0.19 -30.52 16 8 H 0.03 1.88 8.05 -2.91 -0.02 1.86 16 9 C 0.18 8.73 0.24 -11.01 0.00 8.72 16 10 O -0.37 -17.72 8.11 -51.43 -0.42 -18.14 16 11 C 0.48 23.12 7.30 71.24 0.52 23.64 16 12 O -0.53 -29.52 14.72 21.98 0.32 -29.20 16 13 C -0.16 -5.79 5.57 -11.54 -0.06 -5.86 16 14 H 0.15 4.71 7.87 -2.39 -0.02 4.69 16 15 C -0.15 -5.07 9.37 30.60 0.29 -4.79 16 16 C -0.08 -2.80 5.39 -11.53 -0.06 -2.86 16 17 H 0.11 4.18 7.24 -2.39 -0.02 4.16 16 18 C -0.14 -3.61 5.65 -19.78 -0.11 -3.72 16 19 C 0.12 2.36 7.04 22.37 0.16 2.52 16 20 F -0.13 -2.91 12.91 44.97 0.58 -2.33 16 21 C -0.15 -1.78 10.03 22.32 0.22 -1.55 16 22 C -0.05 -0.41 10.04 22.26 0.22 -0.18 16 23 C -0.15 -2.07 10.02 22.32 0.22 -1.84 16 24 C 0.11 2.57 7.25 22.37 0.16 2.73 16 25 F -0.14 -4.13 16.51 44.97 0.74 -3.39 16 26 C -0.15 -6.32 6.92 31.18 0.22 -6.10 16 27 C -0.11 -3.96 7.81 31.18 0.24 -3.72 16 28 C -0.12 -5.08 6.03 31.12 0.19 -4.89 16 29 H 0.27 16.14 8.31 -92.71 -0.77 15.37 16 30 H 0.08 3.26 8.14 -2.39 -0.02 3.24 16 31 H 0.16 4.44 5.14 -2.39 -0.01 4.43 16 32 H 0.17 1.05 8.06 -2.91 -0.02 1.03 16 33 H 0.19 -0.03 8.06 -2.91 -0.02 -0.05 16 34 H 0.17 1.40 8.06 -2.91 -0.02 1.38 16 35 H 0.09 3.34 8.14 -2.39 -0.02 3.32 16 36 H 0.04 2.01 8.09 -2.39 -0.02 1.99 16 37 H 0.07 2.85 8.14 -2.39 -0.02 2.83 16 38 H 0.11 2.94 8.14 -2.38 -0.02 2.92 16 39 H 0.06 2.55 5.72 -2.39 -0.01 2.54 16 40 H 0.10 3.52 8.14 -2.39 -0.02 3.50 16 Total: -1.00 -79.86 337.34 7.00 -72.86 By element: Atomic # 1 Polarization: 18.51 SS G_CDS: 0.92 Total: 19.44 kcal Atomic # 6 Polarization: -29.02 SS G_CDS: 2.85 Total: -26.17 kcal Atomic # 7 Polarization: -59.96 SS G_CDS: 0.30 Total: -59.67 kcal Atomic # 8 Polarization: -47.24 SS G_CDS: -0.09 Total: -47.34 kcal Atomic # 9 Polarization: -7.04 SS G_CDS: 1.32 Total: -5.72 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 1.69 Total: 46.59 kcal Total: -79.86 7.00 -72.86 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000788145708.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.384 kcal (2) G-P(sol) polarization free energy of solvation -79.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.865 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds