Wall clock time and date at job start Tue Mar 31 2020 13:35:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38102 * 120.07594 * 2 1 4 4 Cl 1.73599 * 119.94325 * 359.97438 * 3 2 1 5 5 C 1.38451 * 120.11535 * 180.02562 * 3 2 1 6 6 C 1.38350 * 120.28028 * 359.97438 * 5 3 2 7 7 C 1.37950 * 120.16115 * 359.74497 * 6 5 3 8 8 C 1.39544 * 120.08337 * 180.02562 * 2 1 3 9 9 C 1.47839 * 120.13677 * 359.96538 * 8 2 1 10 10 O 1.21553 * 119.99927 * 314.33951 * 9 8 2 11 11 N 1.34779 * 120.00526 * 134.34802 * 9 8 2 12 12 C 1.47026 * 125.64265 * 354.81352 * 11 9 8 13 13 C 1.54322 * 107.26809 * 181.09904 * 12 11 9 14 14 H 1.08997 * 110.87149 * 263.75839 * 13 12 11 15 15 N 1.46501 * 110.71962 * 140.56278 * 13 12 11 16 16 C 1.36935 * 120.00183 * 91.47176 * 15 13 12 17 17 H 1.07995 * 120.00214 * 0.02562 * 16 15 13 18 18 C 1.38817 * 119.99844 * 179.72237 * 16 15 13 19 19 N 1.31610 * 119.99933 * 0.28593 * 18 16 15 20 20 Si 1.86805 * 119.99703 * 180.27868 * 18 16 15 21 21 H 1.48499 * 109.47156 * 60.00352 * 20 18 16 22 22 H 1.48505 * 109.46754 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.47224 * 300.00248 * 20 18 16 24 24 C 1.55154 * 102.94406 * 22.19848 * 13 12 11 25 25 C 1.47421 * 125.65147 * 174.86729 * 11 9 8 26 26 H 1.09006 * 110.36308 * 274.66189 * 25 11 9 27 27 C 1.52992 * 110.37191 * 36.99276 * 25 11 9 28 28 H 1.08997 * 109.47751 * 274.47296 * 1 2 3 29 29 H 1.08994 * 109.47609 * 34.47956 * 1 2 3 30 30 H 1.09009 * 109.46977 * 154.48105 * 1 2 3 31 31 H 1.07998 * 119.85649 * 180.02562 * 5 3 2 32 32 H 1.08005 * 119.92067 * 180.02562 * 6 5 3 33 33 H 1.08001 * 120.05941 * 180.27601 * 7 6 5 34 34 H 1.09005 * 109.87722 * 61.68306 * 12 11 9 35 35 H 1.09003 * 109.88669 * 300.52039 * 12 11 9 36 36 H 0.97002 * 119.99927 * 271.48211 * 15 13 12 37 37 H 0.97004 * 119.99842 * 179.97438 * 19 18 16 38 38 H 1.08994 * 111.00798 * 82.57231 * 24 13 12 39 39 H 1.09005 * 111.00471 * 206.38561 * 24 13 12 40 40 H 1.08999 * 109.47541 * 175.41033 * 27 25 11 41 41 H 1.09002 * 109.46744 * 295.41291 * 27 25 11 42 42 H 1.08997 * 109.47226 * 55.40906 * 27 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1991 1.1951 0.0000 4 17 1.3316 2.6988 -0.0007 5 6 3.5836 1.1960 -0.0005 6 6 4.2820 0.0018 -0.0005 7 6 3.6023 -1.1987 0.0053 8 6 2.2064 -1.2075 -0.0005 9 6 1.4722 -2.4906 -0.0003 10 8 0.5321 -2.6528 0.7530 11 7 1.8451 -3.4807 -0.8353 12 6 2.8877 -3.3839 -1.8675 13 6 2.9456 -4.7466 -2.5893 14 1 3.7310 -5.3752 -2.1698 15 7 3.1455 -4.5625 -4.0289 16 6 4.4128 -4.5407 -4.5470 17 1 5.2651 -4.6597 -3.8945 18 6 4.6019 -4.3720 -5.9119 19 7 3.5633 -4.2274 -6.7071 20 14 6.3306 -4.3502 -6.6196 21 1 7.0041 -5.6394 -6.3208 22 1 6.2608 -4.1568 -8.0903 23 1 7.1009 -3.2363 -6.0103 24 6 1.5461 -5.3517 -2.3024 25 6 1.2745 -4.8397 -0.8657 26 1 1.7732 -5.4769 -0.1353 27 6 -0.2302 -4.7917 -0.5932 28 1 -0.3634 0.0801 1.0245 29 1 -0.3634 0.8471 -0.5817 30 1 -0.3633 -0.9275 -0.4428 31 1 4.1206 2.1330 -0.0001 32 1 5.3620 0.0093 -0.0005 33 1 4.1492 -2.1300 0.0098 34 1 3.8502 -3.1691 -1.4030 35 1 2.6334 -2.5980 -2.5788 36 1 2.3800 -4.4558 -4.6151 37 1 3.6954 -4.1091 -7.6608 38 1 0.8033 -4.9671 -3.0012 39 1 1.5782 -6.4409 -2.3300 40 1 -0.6508 -5.7917 -0.6994 41 1 -0.4045 -4.4299 0.4201 42 1 -0.7073 -4.1193 -1.3061 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000988867310.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:35:03 Heat of formation + Delta-G solvation = -1.262915 kcal Electronic energy + Delta-G solvation = -25179.599739 eV Core-core repulsion = 21571.619362 eV Total energy + Delta-G solvation = -3607.980377 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 322.119 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.59124 -38.97160 -37.30519 -36.54537 -34.24606 -32.88596 -32.35720 -31.44042 -30.33786 -28.46954 -27.17500 -25.48531 -24.32814 -23.56611 -22.16373 -21.27091 -20.32295 -19.15600 -17.40625 -17.07077 -16.61959 -16.02103 -15.69075 -15.52043 -14.76478 -14.55508 -14.13578 -13.84515 -13.73074 -13.55009 -13.30016 -13.22980 -12.75982 -12.49050 -12.43047 -12.16814 -11.94986 -11.84927 -11.71815 -11.65583 -11.57992 -11.25888 -11.03703 -10.94723 -10.79491 -10.69764 -10.36794 -10.11282 -9.79706 -9.52915 -9.07708 -8.98589 -8.79480 -8.36658 -7.14835 -5.89202 -3.20548 0.76892 1.03168 1.93643 2.75466 3.10629 3.36516 3.41448 3.42624 3.55547 4.40046 4.51174 4.58174 4.76183 4.80473 5.04881 5.08907 5.13101 5.19699 5.42015 5.44300 5.50788 5.53640 5.54839 5.63909 5.65141 5.80621 5.83972 5.98799 6.05818 6.07041 6.09837 6.12303 6.18343 6.24020 6.37335 6.44108 6.48269 6.53881 6.66011 6.81502 7.57510 7.72004 8.26129 8.28839 9.39898 9.93334 10.28055 11.32592 Molecular weight = 322.12amu Principal moments of inertia in cm(-1) A = 0.011335 B = 0.004031 C = 0.003280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2469.666736 B = 6944.383158 C = 8535.039605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.026 4.026 3 C -0.046 4.046 4 Cl -0.067 7.067 5 C -0.089 4.089 6 C -0.117 4.117 7 C -0.075 4.075 8 C -0.112 4.112 9 C 0.575 3.425 10 O -0.537 6.537 11 N -0.602 5.602 12 C 0.070 3.930 13 C 0.172 3.828 14 H 0.069 0.931 15 N -0.712 5.712 16 C -0.252 4.252 17 H 0.072 0.928 18 C -0.006 4.006 19 N -0.929 5.929 20 Si 0.908 3.092 21 H -0.285 1.285 22 H -0.290 1.290 23 H -0.285 1.285 24 C -0.138 4.138 25 C 0.136 3.864 26 H 0.074 0.926 27 C -0.159 4.159 28 H 0.081 0.919 29 H 0.071 0.929 30 H 0.076 0.924 31 H 0.136 0.864 32 H 0.138 0.862 33 H 0.137 0.863 34 H 0.061 0.939 35 H 0.074 0.926 36 H 0.387 0.613 37 H 0.258 0.742 38 H 0.076 0.924 39 H 0.081 0.919 40 H 0.057 0.943 41 H 0.081 0.919 42 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.003 7.387 14.839 16.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.028 4.028 3 C -0.072 4.072 4 Cl -0.038 7.038 5 C -0.108 4.108 6 C -0.136 4.136 7 C -0.094 4.094 8 C -0.115 4.115 9 C 0.364 3.636 10 O -0.416 6.416 11 N -0.335 5.335 12 C -0.056 4.056 13 C 0.060 3.940 14 H 0.087 0.913 15 N -0.351 5.351 16 C -0.383 4.383 17 H 0.090 0.910 18 C -0.203 4.203 19 N -0.576 5.576 20 Si 0.738 3.262 21 H -0.211 1.211 22 H -0.216 1.216 23 H -0.211 1.211 24 C -0.177 4.177 25 C 0.034 3.966 26 H 0.092 0.908 27 C -0.217 4.217 28 H 0.100 0.900 29 H 0.089 0.911 30 H 0.095 0.905 31 H 0.154 0.846 32 H 0.156 0.844 33 H 0.155 0.845 34 H 0.080 0.920 35 H 0.092 0.908 36 H 0.222 0.778 37 H 0.068 0.932 38 H 0.095 0.905 39 H 0.099 0.901 40 H 0.076 0.924 41 H 0.099 0.901 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -3.413 7.462 15.173 17.250 hybrid contribution 0.879 0.350 -0.793 1.235 sum -2.534 7.812 14.380 16.560 Atomic orbital electron populations 1.20905 0.89556 1.03584 1.03353 1.19709 0.97080 0.90011 0.95990 1.20633 0.92385 0.86619 1.07599 1.98355 1.76982 1.31508 1.96965 1.21184 0.91784 0.99450 0.98356 1.21050 1.00517 0.91271 1.00723 1.21499 0.92789 0.99205 0.95900 1.19729 0.93819 0.92800 1.05135 1.17765 0.83128 0.82638 0.80082 1.90714 1.28282 1.81323 1.41263 1.48560 1.38411 1.11800 1.34734 1.23502 0.89266 1.03451 0.89392 1.21179 0.94549 0.91613 0.86693 0.91325 1.42374 1.06422 1.86091 1.00249 1.19201 0.84683 1.43186 0.91216 0.90989 1.24765 0.97266 1.02116 0.96144 1.69646 1.28435 1.55536 1.03933 0.86274 0.83911 0.77908 0.78096 1.21112 1.21615 1.21124 1.23190 0.99052 1.01009 0.94444 1.21910 0.94695 0.82355 0.97681 0.90805 1.22141 0.94126 1.01425 1.03992 0.90016 0.91055 0.90480 0.84646 0.84420 0.84503 0.92045 0.90788 0.77837 0.93233 0.90500 0.90083 0.92373 0.90063 0.92723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.52 8.63 36.00 0.31 -1.21 16 2 C -0.03 -0.36 5.91 -104.19 -0.62 -0.98 16 3 C -0.05 -0.56 6.31 -39.55 -0.25 -0.81 16 4 Cl -0.07 -0.74 27.38 -51.86 -1.42 -2.16 16 5 C -0.09 -0.96 9.82 -39.46 -0.39 -1.35 16 6 C -0.12 -1.26 10.03 -39.65 -0.40 -1.66 16 7 C -0.08 -0.94 8.43 -39.18 -0.33 -1.27 16 8 C -0.11 -1.60 5.36 -104.98 -0.56 -2.16 16 9 C 0.58 9.08 6.39 -12.33 -0.08 9.00 16 10 O -0.54 -9.28 12.93 5.32 0.07 -9.21 16 11 N -0.60 -9.21 3.24 -164.15 -0.53 -9.75 16 12 C 0.07 1.14 5.69 -3.06 -0.02 1.13 16 13 C 0.17 3.08 3.61 -66.10 -0.24 2.84 16 14 H 0.07 1.21 8.09 -51.93 -0.42 0.79 16 15 N -0.71 -16.41 5.15 -51.65 -0.27 -16.67 16 16 C -0.25 -6.49 9.96 -15.06 -0.15 -6.64 16 17 H 0.07 1.78 7.83 -52.49 -0.41 1.36 16 18 C -0.01 -0.16 5.50 -17.43 -0.10 -0.26 16 19 N -0.93 -26.76 13.06 55.49 0.72 -26.04 16 20 Si 0.91 21.26 29.55 -169.99 -5.02 16.24 16 21 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 22 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 23 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 24 C -0.14 -2.10 6.13 -24.58 -0.15 -2.25 16 25 C 0.14 1.93 3.79 -66.42 -0.25 1.68 16 26 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 27 C -0.16 -2.17 8.52 37.15 0.32 -1.85 16 28 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 29 H 0.07 0.83 7.10 -51.93 -0.37 0.46 16 30 H 0.08 1.10 6.36 -51.92 -0.33 0.77 16 31 H 0.14 1.15 8.06 -52.49 -0.42 0.73 16 32 H 0.14 1.13 8.06 -52.48 -0.42 0.70 16 33 H 0.14 1.59 6.28 -52.49 -0.33 1.26 16 34 H 0.06 0.93 5.82 -51.93 -0.30 0.63 16 35 H 0.07 1.39 8.03 -51.93 -0.42 0.97 16 36 H 0.39 9.65 7.76 -40.82 -0.32 9.33 16 37 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 38 H 0.08 1.25 7.92 -51.93 -0.41 0.83 16 39 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 40 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.08 1.21 6.09 -51.93 -0.32 0.89 16 42 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 353.12 15.07 5.32 5.32 Total: -1.00 -29.06 353.12 -9.74 -38.80 By element: Atomic # 1 Polarization: 14.99 SS G_CDS: -5.72 Total: 9.27 kcal Atomic # 6 Polarization: -2.90 SS G_CDS: -2.90 Total: -5.80 kcal Atomic # 7 Polarization: -52.39 SS G_CDS: -0.07 Total: -52.46 kcal Atomic # 8 Polarization: -9.28 SS G_CDS: 0.07 Total: -9.21 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Atomic # 17 Polarization: -0.74 SS G_CDS: -1.42 Total: -2.16 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -29.06 -9.74 -38.80 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000988867310.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.536 kcal (2) G-P(sol) polarization free energy of solvation -29.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds