Wall clock time and date at job start Tue Mar 31 2020 13:25:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38267 * 119.99032 * 2 1 4 4 C 1.38228 * 120.02178 * 179.77084 * 3 2 1 5 5 C 1.38233 * 120.01204 * 0.50908 * 4 3 2 6 6 C 1.50700 * 120.00272 * 179.77242 * 5 4 3 7 7 C 1.50702 * 109.46869 * 264.71901 * 6 5 4 8 8 O 1.21283 * 120.00262 * 0.02562 * 7 6 5 9 9 N 1.34777 * 119.99928 * 179.72354 * 7 6 5 10 10 C 1.46499 * 120.00199 * 180.27479 * 9 7 6 11 11 H 1.09004 * 112.84964 * 25.33489 * 10 9 7 12 12 C 1.53778 * 113.61783 * 156.52956 * 10 9 7 13 13 C 1.53780 * 87.08089 * 139.98334 * 12 10 9 14 14 H 1.09001 * 113.61342 * 89.20285 * 13 12 10 15 15 N 1.46500 * 113.61478 * 220.02044 * 13 12 10 16 16 C 1.36936 * 120.00107 * 205.00237 * 15 13 12 17 17 H 1.08000 * 119.99982 * 359.97438 * 16 15 13 18 18 C 1.38815 * 120.00308 * 180.02562 * 16 15 13 19 19 N 1.31623 * 119.99847 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 120.00127 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.47359 * 90.00061 * 20 18 16 22 22 H 1.48505 * 109.46863 * 209.99789 * 20 18 16 23 23 H 1.48500 * 109.46904 * 329.99493 * 20 18 16 24 24 C 1.53778 * 113.61975 * 254.14080 * 10 9 7 25 25 C 1.38325 * 119.98859 * 359.49018 * 5 4 3 26 26 Cl 1.73596 * 120.01440 * 180.23211 * 25 5 4 27 27 C 1.38187 * 119.99574 * 180.02562 * 2 1 3 28 28 H 1.08997 * 109.46827 * 269.97506 * 1 2 3 29 29 H 1.08998 * 109.47363 * 29.97477 * 1 2 3 30 30 H 1.08996 * 109.47004 * 149.97457 * 1 2 3 31 31 H 1.07994 * 119.98704 * 0.04547 * 3 2 1 32 32 H 1.07999 * 119.98920 * 180.27876 * 4 3 2 33 33 H 1.09004 * 109.47210 * 144.72194 * 6 5 4 34 34 H 1.08994 * 109.47551 * 24.71847 * 6 5 4 35 35 H 0.97000 * 120.00317 * 0.28382 * 9 7 6 36 36 H 1.09002 * 113.61621 * 254.53540 * 12 10 9 37 37 H 1.09003 * 113.61369 * 25.35192 * 12 10 9 38 38 H 0.97005 * 120.00396 * 25.00182 * 15 13 12 39 39 H 0.96995 * 120.00233 * 179.97438 * 19 18 16 40 40 H 1.09001 * 113.61335 * 334.56928 * 24 10 9 41 41 H 1.09000 * 113.61824 * 105.46531 * 24 10 9 42 42 H 1.08007 * 120.00731 * 359.97438 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1975 0.0000 4 6 3.5804 1.1983 0.0048 5 6 4.2725 0.0017 -0.0011 6 6 5.7795 0.0028 -0.0010 7 6 6.2819 -0.1206 -1.4165 8 8 5.4939 -0.2011 -2.3349 9 7 7.6070 -0.1355 -1.6623 10 6 8.0954 -0.2495 -3.0388 11 1 7.3787 0.1167 -3.7739 12 6 9.5168 0.3033 -3.2359 13 6 9.7718 -0.8996 -4.1594 14 1 9.5151 -0.7117 -5.2020 15 7 11.1025 -1.4910 -3.9988 16 6 11.6717 -2.1869 -5.0317 17 1 11.1394 -2.3001 -5.9646 18 6 12.9323 -2.7477 -4.8794 19 7 13.5808 -2.6102 -3.7423 20 14 13.7090 -3.6964 -6.2888 21 1 14.4977 -2.7665 -7.1363 22 1 14.6038 -4.7487 -5.7433 23 1 12.6429 -4.3285 -7.1068 24 6 8.6698 -1.6356 -3.3759 25 6 3.5816 -1.1966 -0.0010 26 17 4.4501 -2.6997 -0.0023 27 6 2.1979 -1.1968 -0.0005 28 1 -0.3633 -0.0004 1.0277 29 1 -0.3634 0.8902 -0.5134 30 1 -0.3633 -0.8897 -0.5142 31 1 1.6578 2.1326 0.0007 32 1 4.1197 2.1340 0.0093 33 1 6.1435 -0.8388 0.5884 34 1 6.1422 0.9344 0.4332 35 1 8.2373 -0.0709 -0.9279 36 1 9.5444 1.2633 -3.7515 37 1 10.1190 0.2934 -2.3274 38 1 11.5805 -1.3896 -3.1608 39 1 14.4615 -3.0024 -3.6357 40 1 9.0404 -2.1780 -2.5061 41 1 8.0146 -2.2387 -4.0044 42 1 1.6579 -2.1322 -0.0005 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001022302021.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:25:49 Heat of formation + Delta-G solvation = 1.919580 kcal Electronic energy + Delta-G solvation = -23674.913737 eV Core-core repulsion = 20067.071364 eV Total energy + Delta-G solvation = -3607.842373 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 322.119 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.30952 -39.36276 -37.85100 -36.64818 -34.09364 -33.98716 -32.68223 -31.00719 -30.26288 -29.56129 -25.98949 -25.11082 -24.32227 -23.10910 -22.37334 -21.22870 -20.30815 -19.24300 -17.24119 -16.92102 -16.72827 -16.37262 -16.02559 -15.50352 -14.86160 -14.53460 -14.46815 -14.24280 -14.07706 -13.74748 -13.29245 -13.05712 -12.95328 -12.81984 -12.74173 -12.33404 -11.92272 -11.90169 -11.85366 -11.49596 -11.43960 -11.25585 -10.94390 -10.90483 -10.61881 -10.48696 -10.31339 -10.04982 -9.76606 -9.59197 -9.06526 -8.90864 -8.74204 -8.71318 -6.98373 -5.80341 -3.09035 0.89273 0.99810 1.98201 2.72443 3.15056 3.42514 3.47910 3.49520 3.54016 4.29135 4.44356 4.58227 4.58376 4.78290 4.84906 4.93306 5.08249 5.09291 5.17561 5.23837 5.25634 5.31507 5.39048 5.44606 5.48356 5.55548 5.73663 5.87552 5.91409 5.96368 6.10476 6.13620 6.19758 6.25765 6.32398 6.53295 6.54375 6.63833 6.77203 7.07982 7.66044 7.68923 8.34287 8.38284 9.49569 10.06339 10.40926 11.42066 Molecular weight = 322.12amu Principal moments of inertia in cm(-1) A = 0.027624 B = 0.002239 C = 0.002172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1013.379888 B =12503.527502 C =12890.498431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.078 4.078 3 C -0.116 4.116 4 C -0.092 4.092 5 C -0.058 4.058 6 C -0.111 4.111 7 C 0.516 3.484 8 O -0.534 6.534 9 N -0.715 5.715 10 C 0.119 3.881 11 H 0.107 0.893 12 C -0.158 4.158 13 C 0.169 3.831 14 H 0.079 0.921 15 N -0.710 5.710 16 C -0.243 4.243 17 H 0.072 0.928 18 C -0.014 4.014 19 N -0.933 5.933 20 Si 0.908 3.092 21 H -0.289 1.289 22 H -0.291 1.291 23 H -0.281 1.281 24 C -0.176 4.176 25 C -0.015 4.015 26 Cl -0.064 7.064 27 C -0.112 4.112 28 H 0.072 0.928 29 H 0.069 0.931 30 H 0.068 0.932 31 H 0.128 0.872 32 H 0.130 0.870 33 H 0.107 0.893 34 H 0.105 0.895 35 H 0.399 0.601 36 H 0.066 0.934 37 H 0.082 0.918 38 H 0.385 0.615 39 H 0.255 0.745 40 H 0.079 0.921 41 H 0.058 0.942 42 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.178 8.535 12.967 28.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.078 4.078 3 C -0.134 4.134 4 C -0.110 4.110 5 C -0.060 4.060 6 C -0.151 4.151 7 C 0.302 3.698 8 O -0.411 6.411 9 N -0.365 5.365 10 C 0.014 3.986 11 H 0.125 0.875 12 C -0.198 4.198 13 C 0.056 3.944 14 H 0.097 0.903 15 N -0.348 5.348 16 C -0.374 4.374 17 H 0.090 0.910 18 C -0.210 4.210 19 N -0.581 5.581 20 Si 0.739 3.261 21 H -0.217 1.217 22 H -0.218 1.218 23 H -0.207 1.207 24 C -0.218 4.218 25 C -0.042 4.042 26 Cl -0.035 7.035 27 C -0.130 4.130 28 H 0.091 0.909 29 H 0.088 0.912 30 H 0.087 0.913 31 H 0.145 0.855 32 H 0.148 0.852 33 H 0.125 0.875 34 H 0.123 0.877 35 H 0.233 0.767 36 H 0.085 0.915 37 H 0.100 0.900 38 H 0.219 0.781 39 H 0.065 0.935 40 H 0.097 0.903 41 H 0.077 0.923 42 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -24.574 8.235 12.115 28.609 hybrid contribution 1.117 -0.700 -0.034 1.319 sum -23.457 7.535 12.080 27.440 Atomic orbital electron populations 1.20793 0.90567 1.03148 1.02491 1.19841 0.96324 0.92458 0.99186 1.21065 0.93991 0.97760 1.00614 1.20946 0.94210 0.96919 0.98967 1.19125 0.94356 0.91878 1.00606 1.20757 0.92414 1.05626 0.96265 1.20305 0.82689 0.76333 0.90513 1.90712 1.55238 1.49032 1.46079 1.46034 1.06484 1.74295 1.09701 1.22467 0.94693 0.98715 0.82683 0.87476 1.23850 0.94464 0.99958 1.01515 1.21382 0.86247 0.90742 0.96036 0.90282 1.42353 1.14371 1.62163 1.15909 1.19319 0.98731 1.25619 0.93776 0.90995 1.24771 0.97412 1.01475 0.97299 1.69656 1.14348 1.49940 1.24177 0.86173 0.79084 0.79403 0.81440 1.21670 1.21770 1.20688 1.24345 0.99839 0.95957 1.01660 1.20761 0.92426 0.86930 1.04072 1.98385 1.76679 1.31731 1.96702 1.20876 0.91748 0.98723 1.01698 0.90939 0.91225 0.91303 0.85455 0.85182 0.87533 0.87656 0.76681 0.91550 0.89972 0.78103 0.93470 0.90257 0.92321 0.85041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.66 10.01 36.01 0.36 -0.30 16 2 C -0.08 -0.68 5.88 -104.63 -0.62 -1.29 16 3 C -0.12 -0.99 9.70 -39.57 -0.38 -1.37 16 4 C -0.09 -0.87 9.68 -39.59 -0.38 -1.25 16 5 C -0.06 -0.64 4.38 -104.59 -0.46 -1.10 16 6 C -0.11 -1.10 5.34 -29.03 -0.16 -1.25 16 7 C 0.52 6.96 7.82 -10.98 -0.09 6.87 16 8 O -0.53 -9.32 15.65 5.55 0.09 -9.23 16 9 N -0.71 -9.13 5.36 -53.02 -0.28 -9.42 16 10 C 0.12 1.80 4.21 -67.12 -0.28 1.52 16 11 H 0.11 1.72 7.50 -51.93 -0.39 1.33 16 12 C -0.16 -2.48 7.58 -25.92 -0.20 -2.67 16 13 C 0.17 3.31 4.48 -67.03 -0.30 3.01 16 14 H 0.08 1.55 8.10 -51.93 -0.42 1.13 16 15 N -0.71 -17.58 5.40 -52.55 -0.28 -17.86 16 16 C -0.24 -6.74 9.97 -15.06 -0.15 -6.89 16 17 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 18 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 19 N -0.93 -27.95 13.06 55.49 0.72 -27.23 16 20 Si 0.91 22.39 29.55 -169.99 -5.02 17.36 16 21 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 22 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 23 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 24 C -0.18 -3.15 7.69 -25.83 -0.20 -3.34 16 25 C -0.02 -0.18 6.31 -39.50 -0.25 -0.42 16 26 Cl -0.06 -0.77 27.40 -51.86 -1.42 -2.19 16 27 C -0.11 -1.12 9.49 -39.55 -0.38 -1.50 16 28 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.07 0.34 8.09 -51.93 -0.42 -0.08 16 30 H 0.07 0.37 8.08 -51.93 -0.42 -0.05 16 31 H 0.13 0.77 8.06 -52.49 -0.42 0.35 16 32 H 0.13 0.96 8.06 -52.49 -0.42 0.53 16 33 H 0.11 0.97 7.13 -51.93 -0.37 0.60 16 34 H 0.11 0.73 8.05 -51.93 -0.42 0.31 16 35 H 0.40 4.10 8.71 -40.82 -0.36 3.74 16 36 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.08 1.26 8.09 -51.93 -0.42 0.84 16 38 H 0.38 10.01 7.93 -40.82 -0.32 9.69 16 39 H 0.26 7.41 8.31 -40.82 -0.34 7.08 16 40 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 41 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 42 H 0.13 1.12 8.06 -52.48 -0.42 0.69 16 LS Contribution 370.36 15.07 5.58 5.58 Total: -1.00 -33.24 370.36 -10.23 -43.47 By element: Atomic # 1 Polarization: 16.02 SS G_CDS: -6.04 Total: 9.98 kcal Atomic # 6 Polarization: -6.90 SS G_CDS: -3.57 Total: -10.47 kcal Atomic # 7 Polarization: -54.66 SS G_CDS: 0.16 Total: -54.51 kcal Atomic # 8 Polarization: -9.32 SS G_CDS: 0.09 Total: -9.23 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -5.02 Total: 17.36 kcal Atomic # 17 Polarization: -0.77 SS G_CDS: -1.42 Total: -2.19 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -33.24 -10.23 -43.47 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001022302021.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.391 kcal (2) G-P(sol) polarization free energy of solvation -33.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.472 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds