Wall clock time and date at job start Tue Mar 31 2020 13:41:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.37919 * 119.93445 * 2 1 4 4 C 1.39593 * 119.86541 * 179.72459 * 3 2 1 5 5 C 1.47784 * 120.13066 * 179.97438 * 4 3 2 6 6 O 1.21566 * 119.99708 * 359.97438 * 5 4 3 7 7 N 1.34770 * 119.99936 * 180.02562 * 5 4 3 8 8 C 1.46506 * 119.99947 * 180.02562 * 7 5 4 9 9 C 1.53000 * 109.47400 * 185.11214 * 8 7 5 10 10 H 1.08999 * 109.87042 * 305.50929 * 9 8 7 11 11 C 1.54328 * 109.88286 * 66.68063 * 9 8 7 12 12 C 1.55153 * 102.94081 * 141.61334 * 11 9 8 13 13 C 1.54918 * 101.58242 * 324.50022 * 12 11 9 14 14 N 1.47018 * 109.88382 * 184.49207 * 9 8 7 15 15 C 1.36938 * 125.64922 * 61.67618 * 14 9 8 16 16 H 1.08004 * 119.99893 * 14.82406 * 15 14 9 17 17 C 1.38809 * 120.00173 * 194.82507 * 15 14 9 18 18 N 1.31617 * 119.99955 * 359.97438 * 17 15 14 19 19 Si 1.86795 * 120.00120 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.47518 * 59.99379 * 19 17 15 21 21 H 1.48500 * 109.47177 * 179.97438 * 19 17 15 22 22 H 1.48506 * 109.47021 * 299.99566 * 19 17 15 23 23 C 1.39633 * 119.73799 * 0.02562 * 4 3 2 24 24 C 1.37875 * 119.86990 * 359.97438 * 23 4 3 25 25 C 1.38487 * 119.93319 * 179.73029 * 2 1 3 26 26 Cl 1.73606 * 119.86806 * 0.26930 * 25 2 1 27 27 H 1.08998 * 109.47095 * 89.99470 * 1 2 3 28 28 H 1.08998 * 109.47173 * 209.99906 * 1 2 3 29 29 H 1.08996 * 109.47053 * 329.99639 * 1 2 3 30 30 H 1.07992 * 120.06496 * 359.70532 * 3 2 1 31 31 H 0.96998 * 120.00202 * 359.97438 * 7 5 4 32 32 H 1.09007 * 109.46748 * 305.11334 * 8 7 5 33 33 H 1.08999 * 109.47237 * 65.10641 * 8 7 5 34 34 H 1.08994 * 110.72127 * 259.97978 * 11 9 8 35 35 H 1.09003 * 110.71973 * 23.25233 * 11 9 8 36 36 H 1.08995 * 111.00387 * 206.43026 * 12 11 9 37 37 H 1.08996 * 111.00616 * 82.57195 * 12 11 9 38 38 H 1.09001 * 110.36486 * 278.17270 * 13 12 11 39 39 H 1.08995 * 110.45863 * 155.89655 * 13 12 11 40 40 H 0.97003 * 119.99905 * 180.02562 * 18 17 15 41 41 H 1.08002 * 120.06761 * 180.02562 * 23 4 3 42 42 H 1.07995 * 119.93383 * 180.02562 * 24 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1953 1.1952 0.0000 4 6 3.5912 1.1935 0.0058 5 6 4.3346 2.4708 0.0053 6 8 3.7304 3.5257 -0.0007 7 7 5.6822 2.4661 0.0104 8 6 6.4192 3.7323 0.0104 9 6 7.9180 3.4502 -0.1118 10 1 8.2306 2.7616 0.6732 11 6 8.2270 2.8461 -1.4980 12 6 9.5796 3.5080 -1.8717 13 6 9.4126 4.9224 -1.2622 14 7 8.6737 4.7067 -0.0049 15 6 8.6893 5.5386 1.0827 16 1 8.3177 5.1896 2.0349 17 6 9.1825 6.8304 0.9615 18 7 9.6357 7.2556 -0.1987 19 14 9.2044 7.9649 2.4453 20 1 10.0369 7.3621 3.5171 21 1 9.7758 9.2789 2.0553 22 1 7.8184 8.1555 2.9432 23 6 4.2823 -0.0197 0.0111 24 6 3.5834 -1.2082 0.0110 25 6 2.1981 -1.2001 0.0056 26 17 1.3248 -2.7006 0.0056 27 1 -0.3633 0.0001 -1.0276 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3633 0.8899 0.5139 30 1 1.6553 2.1304 -0.0048 31 1 6.1643 1.6244 0.0148 32 1 6.0942 4.3418 -0.8329 33 1 6.2246 4.2660 0.9407 34 1 8.3327 1.7633 -1.4319 35 1 7.4538 3.1160 -2.2173 36 1 9.7029 3.5609 -2.9534 37 1 10.4138 2.9798 -1.4102 38 1 8.8388 5.5600 -1.9348 39 1 10.3867 5.3668 -1.0583 40 1 9.9808 8.1582 -0.2834 41 1 5.3623 -0.0273 0.0160 42 1 4.1169 -2.1471 0.0155 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028113045.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:41:51 Heat of formation + Delta-G solvation = -1.966670 kcal Electronic energy + Delta-G solvation = -24200.163859 eV Core-core repulsion = 20592.152965 eV Total energy + Delta-G solvation = -3608.010894 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 322.119 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.36252 -38.80674 -37.60488 -36.72890 -34.46981 -33.22052 -32.48939 -31.30535 -29.67405 -28.72081 -27.24385 -25.17261 -24.37691 -23.01755 -22.35131 -20.43768 -20.06302 -19.52444 -17.86809 -16.94531 -16.50140 -16.35656 -15.45288 -15.12014 -14.95499 -14.64801 -14.39397 -14.26475 -13.88897 -13.73846 -13.30610 -13.12192 -12.76649 -12.74124 -12.32255 -12.11521 -11.92492 -11.83438 -11.77509 -11.63123 -11.34768 -11.07736 -10.96949 -10.79230 -10.29061 -10.15647 -10.02801 -9.88366 -9.79552 -9.69059 -9.25519 -9.03796 -8.70314 -8.59358 -6.86841 -5.79269 -3.16273 0.43113 0.91676 1.73253 2.69913 3.28768 3.40007 3.44293 3.45234 3.60674 4.31357 4.39427 4.45729 4.63540 4.84617 4.89458 5.11504 5.24572 5.29104 5.30557 5.36751 5.46489 5.53226 5.59222 5.73252 5.76996 5.78037 5.91128 5.97986 6.03023 6.11393 6.20862 6.35814 6.42157 6.51078 6.57106 6.65386 6.76589 7.01333 7.48489 7.58240 7.68495 7.76537 8.22819 8.35884 9.14734 9.75287 10.42467 11.32678 Molecular weight = 322.12amu Principal moments of inertia in cm(-1) A = 0.021956 B = 0.002535 C = 0.002375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1274.979792 B =11042.115326 C =11788.035793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.084 4.084 3 C -0.052 4.052 4 C -0.117 4.117 5 C 0.549 3.451 6 O -0.535 6.535 7 N -0.715 5.715 8 C 0.108 3.892 9 C 0.152 3.848 10 H 0.037 0.963 11 C -0.127 4.127 12 C -0.148 4.148 13 C 0.172 3.828 14 N -0.588 5.588 15 C -0.236 4.236 16 H 0.075 0.925 17 C 0.000 4.000 18 N -0.915 5.915 19 Si 0.911 3.089 20 H -0.284 1.284 21 H -0.290 1.290 22 H -0.283 1.283 23 C -0.082 4.082 24 C -0.113 4.113 25 C -0.020 4.020 26 Cl -0.066 7.066 27 H 0.077 0.923 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.146 0.854 31 H 0.395 0.605 32 H 0.068 0.932 33 H 0.070 0.930 34 H 0.057 0.943 35 H 0.063 0.937 36 H 0.058 0.942 37 H 0.058 0.942 38 H 0.026 0.974 39 H 0.072 0.928 40 H 0.255 0.745 41 H 0.137 0.863 42 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.985 -19.754 -2.012 23.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.085 4.085 3 C -0.071 4.071 4 C -0.120 4.120 5 C 0.335 3.665 6 O -0.413 6.413 7 N -0.366 5.366 8 C -0.017 4.017 9 C 0.043 3.957 10 H 0.055 0.945 11 C -0.165 4.165 12 C -0.187 4.187 13 C 0.047 3.953 14 N -0.312 5.312 15 C -0.365 4.365 16 H 0.093 0.907 17 C -0.198 4.198 18 N -0.561 5.561 19 Si 0.741 3.259 20 H -0.211 1.211 21 H -0.215 1.215 22 H -0.209 1.209 23 C -0.101 4.101 24 C -0.131 4.131 25 C -0.047 4.047 26 Cl -0.037 7.037 27 H 0.096 0.904 28 H 0.093 0.907 29 H 0.093 0.907 30 H 0.164 0.836 31 H 0.229 0.771 32 H 0.086 0.914 33 H 0.088 0.912 34 H 0.076 0.924 35 H 0.082 0.918 36 H 0.077 0.923 37 H 0.077 0.923 38 H 0.044 0.956 39 H 0.091 0.909 40 H 0.065 0.935 41 H 0.155 0.845 42 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -13.357 -18.836 -1.971 23.176 hybrid contribution 0.189 0.109 0.742 0.773 sum -13.169 -18.728 -1.229 22.927 Atomic orbital electron populations 1.20890 0.89791 1.03740 1.03189 1.19749 0.97115 0.91003 1.00615 1.21162 0.92754 0.97927 0.95265 1.20223 0.94414 0.93588 1.03771 1.18175 0.82599 0.88374 0.77389 1.90799 1.68447 1.32349 1.49733 1.46082 1.05666 1.10920 1.73913 1.22325 0.92907 0.83691 1.02788 1.21136 0.88892 0.90681 0.94983 0.94492 1.22614 0.98375 0.98433 0.97030 1.23004 0.96097 1.00099 0.99515 1.21461 0.97571 0.90104 0.86150 1.44472 1.49934 1.22180 1.14633 1.18931 1.37787 0.91962 0.87778 0.90698 1.24922 1.01121 0.96737 0.96975 1.69925 1.45964 1.17602 1.22585 0.86225 0.77888 0.80101 0.81709 1.21053 1.21537 1.20906 1.21295 1.00274 0.90955 0.97579 1.20968 0.91789 0.99223 1.01170 1.21036 0.92464 0.86832 1.04381 1.98366 1.76583 1.32058 1.96694 0.90428 0.90709 0.90686 0.83647 0.77073 0.91383 0.91201 0.92417 0.91784 0.92312 0.92284 0.95564 0.90950 0.93502 0.84502 0.84275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.88 9.61 36.01 0.35 -0.54 16 2 C -0.08 -0.81 5.88 -104.65 -0.62 -1.42 16 3 C -0.05 -0.59 9.24 -39.19 -0.36 -0.95 16 4 C -0.12 -1.41 5.87 -104.97 -0.62 -2.03 16 5 C 0.55 8.58 7.77 -12.36 -0.10 8.49 16 6 O -0.54 -10.59 16.34 5.31 0.09 -10.50 16 7 N -0.71 -10.48 5.31 -61.26 -0.33 -10.81 16 8 C 0.11 2.04 5.10 -4.04 -0.02 2.02 16 9 C 0.15 2.91 3.19 -66.95 -0.21 2.69 16 10 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 11 C -0.13 -2.04 6.20 -24.90 -0.15 -2.19 16 12 C -0.15 -2.65 7.09 -24.58 -0.17 -2.83 16 13 C 0.17 4.03 5.41 -2.53 -0.01 4.02 16 14 N -0.59 -14.34 3.13 -162.57 -0.51 -14.85 16 15 C -0.24 -6.39 9.72 -15.06 -0.15 -6.54 16 16 H 0.08 1.97 7.83 -52.48 -0.41 1.56 16 17 C 0.00 0.00 5.47 -17.43 -0.10 -0.10 16 18 N -0.92 -26.43 10.58 55.49 0.59 -25.84 16 19 Si 0.91 21.94 29.55 -169.99 -5.02 16.92 16 20 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 21 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 22 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 23 C -0.08 -0.77 9.54 -39.19 -0.37 -1.14 16 24 C -0.11 -0.96 9.81 -39.61 -0.39 -1.35 16 25 C -0.02 -0.19 6.32 -39.38 -0.25 -0.44 16 26 Cl -0.07 -0.54 27.27 -51.86 -1.41 -1.95 16 27 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.07 0.51 6.88 -51.93 -0.36 0.16 16 29 H 0.07 0.50 8.08 -51.93 -0.42 0.08 16 30 H 0.15 1.68 7.65 -52.49 -0.40 1.28 16 31 H 0.39 4.47 6.43 -40.82 -0.26 4.20 16 32 H 0.07 1.44 8.03 -51.93 -0.42 1.02 16 33 H 0.07 1.51 7.86 -51.93 -0.41 1.10 16 34 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 35 H 0.06 1.03 7.78 -51.93 -0.40 0.63 16 36 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 37 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 38 H 0.03 0.67 8.06 -51.93 -0.42 0.26 16 39 H 0.07 1.89 6.94 -51.93 -0.36 1.53 16 40 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 41 H 0.14 0.97 6.40 -52.49 -0.34 0.64 16 42 H 0.14 0.88 8.06 -52.49 -0.42 0.46 16 LS Contribution 358.74 15.07 5.41 5.41 Total: -1.00 -31.51 358.74 -10.23 -41.74 By element: Atomic # 1 Polarization: 8.07 SS G_CDS: -5.87 Total: 2.21 kcal Atomic # 6 Polarization: 0.85 SS G_CDS: -3.17 Total: -2.32 kcal Atomic # 7 Polarization: -51.25 SS G_CDS: -0.25 Total: -51.50 kcal Atomic # 8 Polarization: -10.59 SS G_CDS: 0.09 Total: -10.50 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Atomic # 17 Polarization: -0.54 SS G_CDS: -1.41 Total: -1.95 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -31.51 -10.23 -41.74 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028113045.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.775 kcal (2) G-P(sol) polarization free energy of solvation -31.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds