Wall clock time and date at job start Tue Mar 31 2020 13:44:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38361 * 119.91788 * 2 1 4 4 C 1.38459 * 120.27637 * 179.97438 * 3 2 1 5 5 Cl 1.73600 * 119.94022 * 180.02562 * 4 3 2 6 6 C 1.38096 * 120.12011 * 359.97438 * 4 3 2 7 7 C 1.39543 * 119.83718 * 0.02562 * 6 4 3 8 8 C 1.47852 * 120.13664 * 179.97438 * 7 6 4 9 9 O 1.21554 * 119.99592 * 220.77330 * 8 7 6 10 10 N 1.34771 * 119.99867 * 40.78184 * 8 7 6 11 11 C 1.46495 * 120.00296 * 356.42003 * 10 8 7 12 12 C 1.46506 * 119.99630 * 176.43021 * 10 8 7 13 13 H 1.08992 * 110.64107 * 1.68342 * 12 10 8 14 14 C 1.55156 * 110.87182 * 124.93096 * 12 10 8 15 15 C 1.55133 * 101.48851 * 82.76584 * 14 12 10 16 16 N 1.47430 * 104.72131 * 37.29218 * 15 14 12 17 17 C 1.36928 * 125.64728 * 155.81868 * 16 15 14 18 18 H 1.08001 * 120.00071 * 193.76772 * 17 16 15 19 19 C 1.38814 * 120.00326 * 13.77324 * 17 16 15 20 20 N 1.31619 * 119.99897 * 27.74780 * 19 17 16 21 21 Si 1.86797 * 120.00186 * 207.75321 * 19 17 16 22 22 H 1.48500 * 109.47053 * 179.97438 * 21 19 17 23 23 H 1.48498 * 109.47437 * 299.99810 * 21 19 17 24 24 H 1.48507 * 109.46989 * 59.99859 * 21 19 17 25 25 C 1.47025 * 108.70103 * 335.55503 * 16 15 14 26 26 C 1.37941 * 119.92072 * 180.22895 * 2 1 3 27 27 H 1.08999 * 109.46985 * 89.99939 * 1 2 3 28 28 H 1.08997 * 109.47568 * 210.00019 * 1 2 3 29 29 H 1.09007 * 109.47366 * 330.00659 * 1 2 3 30 30 H 1.07993 * 119.86605 * 359.97438 * 3 2 1 31 31 H 1.08000 * 120.08076 * 179.97438 * 6 4 3 32 32 H 1.09002 * 109.47598 * 268.09312 * 11 10 8 33 33 H 1.08999 * 109.47070 * 28.09717 * 11 10 8 34 34 H 1.09005 * 109.47033 * 148.09201 * 11 10 8 35 35 H 1.09004 * 111.00504 * 201.00506 * 14 12 10 36 36 H 1.09005 * 111.00675 * 324.82000 * 14 12 10 37 37 H 1.09001 * 110.49551 * 278.45581 * 15 14 12 38 38 H 1.08998 * 110.34539 * 156.06057 * 15 14 12 39 39 H 0.97006 * 120.00096 * 6.15929 * 20 19 17 40 40 H 1.09002 * 109.87886 * 120.70503 * 25 16 15 41 41 H 1.08995 * 109.88047 * 241.70922 * 25 16 15 42 42 H 1.07998 * 120.06475 * 0.05048 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1971 1.1992 0.0000 4 6 3.5816 1.2079 0.0005 5 17 4.4386 2.7176 0.0012 6 6 4.2821 0.0178 0.0016 7 6 3.5910 -1.1945 0.0016 8 6 4.3343 -2.4727 0.0022 9 8 3.9509 -3.3989 -0.6853 10 7 5.4367 -2.6107 0.7650 11 6 5.9437 -1.4708 1.5328 12 6 6.1283 -3.9008 0.8261 13 1 5.6416 -4.6288 0.1772 14 6 7.6252 -3.7440 0.4495 15 6 8.2352 -3.2750 1.7966 16 7 7.4985 -4.0318 2.8252 17 6 7.9551 -4.3211 4.0832 18 1 7.4480 -5.0609 4.6849 19 6 9.0696 -3.6634 4.5854 20 7 9.3637 -2.4514 4.1647 21 14 10.1522 -4.4985 5.8582 22 1 11.2690 -3.5927 6.2290 23 1 9.3461 -4.8111 7.0654 24 1 10.7027 -5.7559 5.2913 25 6 6.1897 -4.4190 2.2785 26 6 2.1950 -1.1956 -0.0048 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3634 -0.8899 0.5138 29 1 -0.3634 0.8901 0.5138 30 1 1.6536 2.1324 -0.0004 31 1 5.3620 0.0253 0.0016 32 1 6.6809 -0.9312 0.9384 33 1 5.1181 -0.8036 1.7807 34 1 6.4092 -1.8293 2.4510 35 1 8.0508 -4.6969 0.1347 36 1 7.7566 -2.9857 -0.3225 37 1 8.0834 -2.2042 1.9321 38 1 9.2974 -3.5164 1.8360 39 1 8.7549 -1.9826 3.5725 40 1 6.0899 -5.5044 2.2894 41 1 5.3929 -3.9677 2.8696 42 1 1.6548 -2.1307 -0.0093 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033265821.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:44:00 Heat of formation + Delta-G solvation = 19.885432 kcal Electronic energy + Delta-G solvation = -25188.798040 eV Core-core repulsion = 21581.734725 eV Total energy + Delta-G solvation = -3607.063315 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 322.119 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.68053 -39.09374 -37.58566 -36.70256 -34.81628 -33.28223 -32.12181 -31.11006 -29.20636 -28.37241 -27.23699 -26.41155 -24.58160 -23.71849 -22.10970 -20.81934 -20.22297 -18.98825 -17.66918 -17.24387 -16.91221 -16.24616 -16.01180 -15.17391 -14.96889 -14.52574 -14.24623 -14.11819 -13.73441 -13.67027 -13.27492 -13.08378 -12.99471 -12.76591 -12.66700 -12.17683 -12.00155 -11.95479 -11.85295 -11.63878 -11.42242 -11.21011 -11.08347 -10.80788 -10.64682 -10.49206 -10.28907 -10.02379 -9.73561 -9.57107 -9.12667 -8.93419 -8.48667 -8.42482 -7.00279 -6.13961 -3.16702 0.61008 0.86610 1.83027 2.63766 3.01003 3.41777 3.48597 3.53072 3.70342 4.28359 4.38404 4.56383 4.69719 4.85816 4.89016 4.94478 5.16314 5.18158 5.27083 5.28585 5.32914 5.38843 5.43414 5.55221 5.62946 5.68926 5.70990 5.80897 5.93983 6.00679 6.04332 6.08661 6.13090 6.32256 6.37170 6.40472 6.56069 6.82787 6.94289 6.96619 7.48788 7.73556 8.16372 8.44181 8.96836 9.77057 10.30748 11.19268 Molecular weight = 322.12amu Principal moments of inertia in cm(-1) A = 0.016138 B = 0.003411 C = 0.003097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1734.602499 B = 8206.497380 C = 9038.247874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.081 4.081 3 C -0.094 4.094 4 C -0.038 4.038 5 Cl -0.064 7.064 6 C -0.088 4.088 7 C -0.105 4.105 8 C 0.557 3.443 9 O -0.540 6.540 10 N -0.585 5.585 11 C 0.061 3.939 12 C 0.126 3.874 13 H 0.105 0.895 14 C -0.146 4.146 15 C 0.136 3.864 16 N -0.602 5.602 17 C -0.336 4.336 18 H 0.066 0.934 19 C -0.024 4.024 20 N -0.918 5.918 21 Si 1.063 2.937 22 H -0.285 1.285 23 H -0.294 1.294 24 H -0.294 1.294 25 C 0.127 3.873 26 C -0.064 4.064 27 H 0.075 0.925 28 H 0.072 0.928 29 H 0.070 0.930 30 H 0.136 0.864 31 H 0.146 0.854 32 H 0.058 0.942 33 H 0.070 0.930 34 H 0.100 0.900 35 H 0.078 0.922 36 H 0.066 0.934 37 H 0.034 0.966 38 H 0.053 0.947 39 H 0.267 0.733 40 H 0.037 0.963 41 H 0.029 0.971 42 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.585 8.433 -9.873 19.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.082 4.082 3 C -0.113 4.113 4 C -0.064 4.064 5 Cl -0.035 7.035 6 C -0.107 4.107 7 C -0.108 4.108 8 C 0.345 3.655 9 O -0.419 6.419 10 N -0.316 5.316 11 C -0.081 4.081 12 C 0.022 3.978 13 H 0.123 0.877 14 C -0.185 4.185 15 C 0.011 3.989 16 N -0.330 5.330 17 C -0.464 4.464 18 H 0.084 0.916 19 C -0.225 4.225 20 N -0.559 5.559 21 Si 0.892 3.108 22 H -0.211 1.211 23 H -0.221 1.221 24 H -0.222 1.222 25 C 0.001 3.999 26 C -0.083 4.083 27 H 0.094 0.906 28 H 0.091 0.909 29 H 0.089 0.911 30 H 0.154 0.846 31 H 0.164 0.836 32 H 0.077 0.923 33 H 0.089 0.911 34 H 0.118 0.882 35 H 0.096 0.904 36 H 0.085 0.915 37 H 0.052 0.948 38 H 0.071 0.929 39 H 0.079 0.921 40 H 0.055 0.945 41 H 0.047 0.953 42 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -13.250 8.189 -9.216 18.099 hybrid contribution -1.237 0.085 -0.747 1.448 sum -14.487 8.274 -9.964 19.432 Atomic orbital electron populations 1.20805 0.89929 1.03379 1.02860 1.19800 0.96699 0.91931 0.99734 1.21084 0.91882 0.98785 0.99511 1.20764 0.92527 0.87278 1.05863 1.98388 1.77163 1.31005 1.96943 1.21505 1.01296 0.89891 0.97978 1.19862 0.94258 0.92918 1.03799 1.18226 0.80382 0.87023 0.79833 1.90762 1.68037 1.41170 1.41903 1.47721 1.26406 1.12514 1.44946 1.22412 0.99360 0.88382 0.97978 1.22177 0.93078 0.84055 0.98444 0.87711 1.23208 0.94439 1.01839 0.99012 1.21814 0.96446 0.95116 0.85546 1.44588 1.11923 1.65197 1.11285 1.19748 1.14728 1.20413 0.91497 0.91618 1.25687 0.99003 0.95516 1.02290 1.70821 1.41463 1.09217 1.34399 0.83551 0.76650 0.75312 0.75239 1.21088 1.22071 1.22157 1.21646 0.89751 0.97582 0.90917 1.21174 0.92315 0.98571 0.96232 0.90647 0.90919 0.91086 0.84598 0.83648 0.92319 0.91116 0.88163 0.90369 0.91506 0.94827 0.92869 0.92138 0.94549 0.95336 0.84483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.73 10.01 36.00 0.36 -0.37 16 2 C -0.08 -0.77 5.87 -104.69 -0.61 -1.39 16 3 C -0.09 -0.89 9.47 -39.45 -0.37 -1.26 16 4 C -0.04 -0.41 6.31 -39.55 -0.25 -0.66 16 5 Cl -0.06 -0.66 28.95 -51.86 -1.50 -2.17 16 6 C -0.09 -1.06 7.27 -39.15 -0.28 -1.35 16 7 C -0.11 -1.41 5.17 -104.97 -0.54 -1.95 16 8 C 0.56 9.06 7.34 -12.33 -0.09 8.97 16 9 O -0.54 -10.16 16.31 5.32 0.09 -10.07 16 10 N -0.59 -9.65 2.83 -172.95 -0.49 -10.14 16 11 C 0.06 0.95 6.98 59.84 0.42 1.37 16 12 C 0.13 2.25 3.57 -66.09 -0.24 2.02 16 13 H 0.10 1.86 6.99 -51.93 -0.36 1.50 16 14 C -0.15 -2.60 6.55 -24.46 -0.16 -2.76 16 15 C 0.14 3.00 4.37 -2.40 -0.01 2.99 16 16 N -0.60 -14.68 2.91 -169.93 -0.49 -15.18 16 17 C -0.34 -9.26 10.04 -15.06 -0.15 -9.42 16 18 H 0.07 1.82 7.97 -52.49 -0.42 1.40 16 19 C -0.02 -0.66 5.08 -17.43 -0.09 -0.75 16 20 N -0.92 -26.66 12.83 55.49 0.71 -25.95 16 21 Si 1.06 24.96 30.00 -169.99 -5.10 19.86 16 22 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 23 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 24 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 25 C 0.13 2.66 6.22 -3.06 -0.02 2.64 16 26 C -0.06 -0.75 9.29 -39.18 -0.36 -1.11 16 27 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.07 0.44 8.08 -51.93 -0.42 0.02 16 29 H 0.07 0.37 8.08 -51.93 -0.42 -0.05 16 30 H 0.14 0.99 8.06 -52.49 -0.42 0.56 16 31 H 0.15 1.73 5.70 -52.49 -0.30 1.43 16 32 H 0.06 0.83 7.04 -51.93 -0.37 0.47 16 33 H 0.07 0.98 5.47 -51.93 -0.28 0.70 16 34 H 0.10 1.93 5.34 -51.93 -0.28 1.65 16 35 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 36 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 37 H 0.03 0.75 4.22 -51.93 -0.22 0.54 16 38 H 0.05 1.31 7.77 -51.93 -0.40 0.91 16 39 H 0.27 7.62 5.92 -40.82 -0.24 7.38 16 40 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.03 0.62 8.05 -51.93 -0.42 0.20 16 42 H 0.14 1.53 8.06 -52.49 -0.42 1.11 16 LS Contribution 348.00 15.07 5.24 5.24 Total: -1.00 -31.22 348.00 -9.41 -40.63 By element: Atomic # 1 Polarization: 6.26 SS G_CDS: -5.46 Total: 0.80 kcal Atomic # 6 Polarization: -0.63 SS G_CDS: -2.41 Total: -3.04 kcal Atomic # 7 Polarization: -50.99 SS G_CDS: -0.27 Total: -51.27 kcal Atomic # 8 Polarization: -10.16 SS G_CDS: 0.09 Total: -10.07 kcal Atomic # 14 Polarization: 24.96 SS G_CDS: -5.10 Total: 19.86 kcal Atomic # 17 Polarization: -0.66 SS G_CDS: -1.50 Total: -2.17 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -31.22 -9.41 -40.63 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033265821.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.517 kcal (2) G-P(sol) polarization free energy of solvation -31.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.631 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds