Wall clock time and date at job start Tue Mar 31 2020 12:43:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.43204 * 179.97438 * 2 1 4 4 C 1.39659 * 120.14633 * 167.99949 * 3 2 1 5 5 C 1.37921 * 119.84280 * 179.97438 * 4 3 2 6 6 C 1.38387 * 120.15456 * 359.74849 * 5 4 3 7 7 C 1.38337 * 120.30228 * 0.50745 * 6 5 4 8 8 C 1.50702 * 119.92451 * 179.76664 * 7 6 5 9 9 N 1.46510 * 109.46828 * 269.72849 * 8 7 6 10 10 C 1.34781 * 119.99384 * 180.02562 * 9 8 7 11 11 O 1.21575 * 120.00325 * 359.97438 * 10 9 8 12 12 N 1.34781 * 119.99426 * 180.27687 * 10 9 8 13 13 C 1.39459 * 119.99983 * 175.17984 * 12 10 9 14 14 C 1.38638 * 119.65192 * 186.28381 * 13 12 10 15 15 C 1.40819 * 118.67737 * 179.97438 * 14 13 12 16 16 C 1.41547 * 120.99668 * 179.97438 * 15 14 13 17 17 H 1.07994 * 119.99643 * 201.14894 * 16 15 14 18 18 C 1.40030 * 120.00209 * 21.13539 * 16 15 14 19 19 N 1.30743 * 119.99956 * 12.11944 * 18 16 15 20 20 Si 1.86801 * 120.00104 * 192.11548 * 18 16 15 21 21 H 1.48494 * 109.47023 * 359.97438 * 20 18 16 22 22 H 1.48493 * 109.46970 * 120.00701 * 20 18 16 23 23 H 1.48502 * 109.46772 * 240.00428 * 20 18 16 24 24 C 1.41159 * 118.00426 * 0.02562 * 15 14 13 25 25 C 1.36591 * 119.12979 * 359.97438 * 24 15 14 26 26 N 1.32069 * 121.25683 * 359.74417 * 25 24 15 27 27 C 1.37972 * 120.15046 * 359.49381 * 7 6 5 28 28 H 1.08001 * 120.07527 * 359.95879 * 4 3 2 29 29 H 1.07999 * 119.92385 * 180.02562 * 5 4 3 30 30 H 1.07997 * 119.85197 * 180.27927 * 6 5 4 31 31 H 1.08994 * 109.47447 * 149.72758 * 8 7 6 32 32 H 1.08998 * 109.47003 * 29.72587 * 8 7 6 33 33 H 0.96990 * 120.00311 * 359.97438 * 9 8 7 34 34 H 0.96999 * 119.99921 * 355.16799 * 12 10 9 35 35 H 1.08002 * 120.66110 * 0.02562 * 14 13 12 36 36 H 0.96996 * 120.00359 * 179.97438 * 19 18 16 37 37 H 1.07993 * 120.43448 * 179.97438 * 24 15 14 38 38 H 1.07991 * 119.36940 * 179.97438 * 25 24 15 39 39 H 1.08001 * 120.07212 * 180.22731 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2689 1.1823 -0.2511 5 6 4.6481 1.1758 -0.2491 6 6 5.3374 0.0033 0.0062 7 6 4.6495 -1.1717 0.2505 8 6 5.4088 -2.4448 0.5222 9 7 5.6556 -3.1453 -0.7407 10 6 6.3229 -4.3163 -0.7425 11 8 6.7205 -4.7910 0.3037 12 7 6.5548 -4.9579 -1.9049 13 6 7.3310 -6.1164 -1.9191 14 6 7.6741 -6.6973 -3.1302 15 6 8.4590 -7.8664 -3.1207 16 6 8.8373 -8.5004 -4.3284 17 1 9.1286 -9.5402 -4.3241 18 6 8.8334 -7.7793 -5.5287 19 7 8.7142 -6.4774 -5.5089 20 14 8.9987 -8.6773 -7.1584 21 1 9.1190 -10.1363 -6.9095 22 1 7.7986 -8.4141 -7.9924 23 1 10.2105 -8.1952 -7.8685 24 6 8.8563 -8.3878 -1.8705 25 6 8.4693 -7.7454 -0.7289 26 7 7.7372 -6.6472 -0.7751 27 6 3.2698 -1.1797 0.2514 28 1 2.7321 2.0988 -0.4467 29 1 5.1914 2.0889 -0.4427 30 1 6.4174 0.0048 0.0110 31 1 4.8229 -3.0833 1.1834 32 1 6.3604 -2.2060 0.9971 33 1 5.3380 -2.7667 -1.5753 34 1 6.1816 -4.6139 -2.7315 35 1 7.3467 -6.2613 -4.0626 36 1 8.7119 -5.9779 -6.3403 37 1 9.4584 -9.2827 -1.8174 38 1 8.7707 -8.1412 0.2297 39 1 2.7340 -2.0970 0.4460 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001434735049.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:43:55 Heat of formation + Delta-G solvation = 67.977325 kcal Electronic energy + Delta-G solvation = -24397.512506 eV Core-core repulsion = 20691.427118 eV Total energy + Delta-G solvation = -3706.085388 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.117 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.24210 -39.57338 -38.02137 -36.85546 -34.96829 -34.20418 -33.73884 -31.80732 -31.64398 -30.46996 -28.60110 -26.22595 -25.95458 -24.32098 -22.42467 -21.92453 -21.54335 -20.12465 -18.99703 -17.90167 -17.66857 -16.76689 -16.18746 -16.12078 -15.39209 -14.98782 -14.79565 -14.70202 -14.32047 -14.22129 -14.15808 -13.62048 -13.50906 -13.32865 -13.17291 -12.88577 -12.84551 -12.61738 -12.57069 -12.16551 -11.83211 -11.50181 -11.45478 -11.16654 -10.90345 -10.28923 -10.10109 -9.78649 -9.72946 -9.44008 -9.40702 -9.30210 -8.87449 -7.98371 -7.72798 -6.99809 -6.76214 -4.63660 0.32069 0.76194 2.29236 2.48618 2.69236 2.79942 3.00384 3.05757 3.07471 3.24836 3.45060 3.50167 3.82949 3.85323 4.23934 4.39012 4.58089 4.61391 4.69470 4.77279 4.89852 5.13858 5.35309 5.49020 5.63977 5.72364 5.77641 5.83851 5.96592 6.08014 6.30825 6.54430 6.59946 6.64447 6.81684 6.93287 7.10312 7.16972 7.27273 7.44670 7.50170 7.88304 8.10924 8.37712 8.47339 8.73458 8.75823 9.16386 9.74624 10.05187 Molecular weight = 322.12amu Principal moments of inertia in cm(-1) A = 0.016596 B = 0.002344 C = 0.002195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1686.762157 B =11944.329391 C =12753.061559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.417 5.417 2 C 0.255 3.745 3 C -0.033 4.033 4 C -0.066 4.066 5 C -0.121 4.121 6 C -0.068 4.068 7 C -0.103 4.103 8 C 0.182 3.818 9 N -0.753 5.753 10 C 0.692 3.308 11 O -0.532 6.532 12 N -0.667 5.667 13 C 0.353 3.647 14 C -0.250 4.250 15 C 0.139 3.861 16 C -0.448 4.448 17 H 0.082 0.918 18 C 0.074 3.926 19 N -0.790 5.790 20 Si 0.914 3.086 21 H -0.260 1.260 22 H -0.272 1.272 23 H -0.273 1.273 24 C -0.285 4.285 25 C 0.119 3.881 26 N -0.554 5.554 27 C -0.051 4.051 28 H 0.133 0.867 29 H 0.136 0.864 30 H 0.135 0.865 31 H 0.076 0.924 32 H 0.078 0.922 33 H 0.393 0.607 34 H 0.404 0.596 35 H 0.139 0.861 36 H 0.280 0.720 37 H 0.101 0.899 38 H 0.122 0.878 39 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.650 15.310 4.302 17.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.092 5.092 2 C -0.061 4.061 3 C -0.036 4.036 4 C -0.086 4.086 5 C -0.139 4.139 6 C -0.087 4.087 7 C -0.103 4.103 8 C 0.058 3.942 9 N -0.412 5.412 10 C 0.391 3.609 11 O -0.403 6.403 12 N -0.314 5.314 13 C 0.127 3.873 14 C -0.276 4.276 15 C 0.130 3.870 16 C -0.479 4.479 17 H 0.100 0.900 18 C -0.144 4.144 19 N -0.417 5.417 20 Si 0.738 3.262 21 H -0.183 1.183 22 H -0.197 1.197 23 H -0.199 1.199 24 C -0.309 4.309 25 C -0.035 4.035 26 N -0.273 5.273 27 C -0.072 4.072 28 H 0.151 0.849 29 H 0.154 0.846 30 H 0.153 0.847 31 H 0.094 0.906 32 H 0.096 0.904 33 H 0.226 0.774 34 H 0.238 0.762 35 H 0.157 0.843 36 H 0.091 0.909 37 H 0.119 0.881 38 H 0.139 0.861 39 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -8.286 15.505 5.984 18.571 hybrid contribution 0.445 -0.281 -2.454 2.510 sum -7.842 15.225 3.529 17.485 Atomic orbital electron populations 1.81277 1.12086 1.07177 1.08662 1.25708 0.92662 0.93917 0.93797 1.15969 0.84314 0.95522 1.07823 1.21236 0.94501 0.96604 0.96294 1.21133 0.93527 0.98798 1.00480 1.21459 1.00956 0.91710 0.94578 1.19900 0.93108 0.95694 1.01628 1.19945 0.99450 0.88682 0.86164 1.45223 1.63085 1.23414 1.09429 1.16071 0.79624 0.80308 0.84876 1.91021 1.53439 1.66106 1.29742 1.42532 1.53663 1.26429 1.08795 1.17988 0.92195 0.86289 0.90831 1.21784 1.07511 1.02588 0.95711 1.17594 0.87020 0.90093 0.92263 1.19650 1.39060 0.98308 0.90927 0.90015 1.25982 0.92192 0.94690 1.01534 1.69742 1.35517 1.06946 1.29455 0.86160 0.78620 0.80842 0.80544 1.18319 1.19667 1.19876 1.21643 1.10317 1.05077 0.93835 1.21462 0.94257 0.91001 0.96767 1.67198 1.19015 1.13981 1.27101 1.21184 0.93648 0.96906 0.95433 0.84936 0.84624 0.84693 0.90563 0.90383 0.77403 0.76160 0.84317 0.90883 0.88114 0.86076 0.84597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.42 -4.94 18.54 41.84 0.78 -4.16 16 2 C 0.25 2.36 15.33 -22.47 -0.34 2.02 16 3 C -0.03 -0.23 5.73 -106.93 -0.61 -0.85 16 4 C -0.07 -0.35 9.76 -39.17 -0.38 -0.73 16 5 C -0.12 -0.58 10.03 -39.64 -0.40 -0.98 16 6 C -0.07 -0.40 9.69 -39.49 -0.38 -0.79 16 7 C -0.10 -0.75 5.24 -104.68 -0.55 -1.30 16 8 C 0.18 1.83 5.80 -5.19 -0.03 1.80 16 9 N -0.75 -9.20 5.55 -66.41 -0.37 -9.57 16 10 C 0.69 12.65 8.52 -86.91 -0.74 11.91 16 11 O -0.53 -12.13 14.60 5.30 0.08 -12.05 16 12 N -0.67 -12.73 5.40 -15.86 -0.09 -12.82 16 13 C 0.35 8.47 7.42 -154.68 -1.15 7.32 16 14 C -0.25 -6.26 8.67 -38.46 -0.33 -6.60 16 15 C 0.14 3.62 5.65 -106.55 -0.60 3.01 16 16 C -0.45 -11.37 9.15 -37.65 -0.34 -11.71 16 17 H 0.08 1.99 7.88 -52.49 -0.41 1.58 16 18 C 0.07 1.76 5.31 -17.34 -0.09 1.66 16 19 N -0.79 -18.98 10.50 55.55 0.58 -18.39 16 20 Si 0.91 17.64 29.58 -169.99 -5.03 12.61 16 21 H -0.26 -4.99 7.11 56.52 0.40 -4.59 16 22 H -0.27 -5.14 7.11 56.52 0.40 -4.74 16 23 H -0.27 -5.22 7.11 56.52 0.40 -4.82 16 24 C -0.28 -6.95 9.85 -39.07 -0.38 -7.33 16 25 C 0.12 2.85 11.10 -18.04 -0.20 2.65 16 26 N -0.55 -14.11 7.86 -12.76 -0.10 -14.21 16 27 C -0.05 -0.36 9.41 -39.17 -0.37 -0.73 16 28 H 0.13 0.49 8.06 -52.49 -0.42 0.07 16 29 H 0.14 0.37 8.06 -52.49 -0.42 -0.06 16 30 H 0.14 0.69 8.06 -52.49 -0.42 0.27 16 31 H 0.08 0.82 8.08 -51.93 -0.42 0.40 16 32 H 0.08 0.83 8.08 -51.93 -0.42 0.41 16 33 H 0.39 3.74 8.48 -40.82 -0.35 3.40 16 34 H 0.40 6.26 8.72 -40.82 -0.36 5.90 16 35 H 0.14 3.44 5.81 -52.49 -0.30 3.14 16 36 H 0.28 6.05 8.29 -40.82 -0.34 5.71 16 37 H 0.10 2.25 8.06 -52.49 -0.42 1.83 16 38 H 0.12 2.55 8.06 -52.49 -0.42 2.12 16 39 H 0.14 0.92 8.06 -52.49 -0.42 0.50 16 LS Contribution 353.69 15.07 5.33 5.33 Total: -1.00 -33.12 353.69 -9.66 -42.78 By element: Atomic # 1 Polarization: 15.05 SS G_CDS: -3.93 Total: 11.12 kcal Atomic # 6 Polarization: 6.28 SS G_CDS: -6.91 Total: -0.63 kcal Atomic # 7 Polarization: -59.95 SS G_CDS: 0.80 Total: -59.15 kcal Atomic # 8 Polarization: -12.13 SS G_CDS: 0.08 Total: -12.05 kcal Atomic # 14 Polarization: 17.64 SS G_CDS: -5.03 Total: 12.61 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -33.12 -9.66 -42.78 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001434735049.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.755 kcal (2) G-P(sol) polarization free energy of solvation -33.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.778 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds