Wall clock time and date at job start Tue Mar 31 2020 13:10:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50692 * 109.46914 * 2 1 4 4 C 1.38137 * 119.54941 * 125.00221 * 3 2 1 5 5 C 1.39819 * 119.03766 * 179.97438 * 4 3 2 6 6 C 1.48151 * 120.91513 * 180.02562 * 5 4 3 7 7 O 1.21515 * 119.99965 * 325.01759 * 6 5 4 8 8 N 1.34772 * 120.00151 * 145.02018 * 6 5 4 9 9 C 1.46926 * 120.63110 * 174.35706 * 8 6 5 10 10 C 1.53192 * 108.89361 * 126.30135 * 9 8 6 11 11 C 1.53351 * 109.14857 * 54.57755 * 10 9 8 12 12 C 1.50701 * 109.40687 * 178.68552 * 11 10 9 13 13 H 1.07994 * 120.00361 * 120.12008 * 12 11 10 14 14 C 1.37880 * 119.99864 * 300.12194 * 12 11 10 15 15 N 1.31516 * 120.00042 * 180.02562 * 14 12 11 16 16 Si 1.86805 * 120.00071 * 359.97438 * 14 12 11 17 17 H 1.48497 * 109.46935 * 90.00132 * 16 14 12 18 18 H 1.48494 * 109.47430 * 210.00330 * 16 14 12 19 19 H 1.48506 * 109.47065 * 330.00584 * 16 14 12 20 20 C 1.53037 * 109.60659 * 298.71356 * 11 10 9 21 21 C 1.46928 * 120.63328 * 354.34073 * 8 6 5 22 22 C 1.39781 * 118.16957 * 0.26984 * 5 4 3 23 23 C 1.38302 * 118.98917 * 359.48276 * 22 5 4 24 24 Cl 1.73602 * 119.56864 * 180.22486 * 23 22 5 25 25 N 1.31820 * 119.54452 * 305.01682 * 3 2 1 26 26 H 1.08999 * 109.47113 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47336 * 300.00216 * 1 2 3 28 28 H 1.08998 * 109.47246 * 60.00591 * 1 2 3 29 29 H 1.08994 * 109.46727 * 239.99760 * 2 1 3 30 30 H 1.09006 * 109.46716 * 119.99752 * 2 1 3 31 31 H 1.08003 * 120.47627 * 359.97418 * 4 3 2 32 32 H 1.09002 * 109.58616 * 246.15631 * 9 8 6 33 33 H 1.09001 * 109.58892 * 6.44026 * 9 8 6 34 34 H 1.09000 * 109.49968 * 174.65630 * 10 9 8 35 35 H 1.09000 * 109.49633 * 294.75708 * 10 9 8 36 36 H 1.08997 * 109.43258 * 58.76183 * 11 10 9 37 37 H 0.97002 * 119.99832 * 179.97438 * 15 14 12 38 38 H 1.09000 * 109.49706 * 301.42176 * 20 11 10 39 39 H 1.09004 * 109.52372 * 181.34213 * 20 11 10 40 40 H 1.09000 * 109.58135 * 353.41129 * 21 8 6 41 41 H 1.08998 * 109.59017 * 113.69324 * 21 8 6 42 42 H 1.08001 * 120.50624 * 179.70191 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.9092 1.8333 0.9843 5 6 3.3689 3.1537 0.9738 6 6 4.3105 3.6402 2.0090 7 8 4.2286 3.2250 3.1481 8 7 5.2578 4.5432 1.6874 9 6 6.1183 5.1274 2.7252 10 6 7.5835 4.9270 2.3254 11 6 7.8056 5.5044 0.9222 12 6 9.2529 5.3394 0.5361 13 1 9.5160 4.7638 -0.3390 14 6 10.2411 5.9231 1.3000 15 7 11.5041 5.7795 0.9628 16 14 9.7859 6.9193 2.8134 17 1 9.7422 6.0263 3.9990 18 1 10.8009 7.9813 3.0307 19 1 8.4527 7.5421 2.6134 20 6 6.9218 4.7635 -0.0838 21 6 5.4501 4.9620 0.2922 22 6 2.9115 4.0036 -0.0373 23 6 2.0375 3.5062 -0.9867 24 17 1.4646 4.5469 -2.2526 25 7 1.6285 2.2529 -0.9392 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5137 -0.8900 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 3.2350 1.1458 1.7509 32 1 5.9073 6.1927 2.8178 33 1 5.9287 4.6331 3.6780 34 1 8.2287 5.4389 3.0394 35 1 7.8172 3.8623 2.3214 36 1 7.5479 6.5635 0.9210 37 1 12.1994 6.1906 1.5001 38 1 7.1619 3.7004 -0.0652 39 1 7.0982 5.1589 -1.0841 40 1 4.8213 4.3568 -0.3608 41 1 5.1821 6.0131 0.1859 42 1 3.2384 5.0321 -0.0786 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397194783.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:10:55 Heat of formation + Delta-G solvation = -4.795868 kcal Electronic energy + Delta-G solvation = -24955.349281 eV Core-core repulsion = 21347.215704 eV Total energy + Delta-G solvation = -3608.133577 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 322.119 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.18031 -39.59824 -37.28098 -36.96415 -34.75821 -33.69556 -32.85218 -31.51056 -30.81556 -30.02004 -27.00285 -25.29811 -24.31932 -23.28795 -22.75977 -21.89620 -20.24298 -19.00105 -17.82493 -17.03115 -16.71043 -16.32478 -16.11184 -15.49828 -15.27567 -14.95604 -14.61193 -14.39481 -14.12322 -13.75305 -13.52593 -13.19036 -13.05213 -12.76655 -12.55840 -12.47578 -12.18298 -12.00699 -11.81370 -11.75364 -11.61279 -11.34320 -11.09257 -10.88403 -10.42206 -10.29785 -10.22534 -10.03622 -9.83148 -9.80179 -9.42742 -9.18030 -9.08890 -8.61750 -8.40070 -6.15017 -4.15013 0.41760 0.54136 1.46260 2.59322 2.91011 3.20002 3.29007 3.32970 3.33885 3.86432 4.12062 4.32526 4.45390 4.53134 4.69536 4.86513 4.95443 4.98620 5.10611 5.14408 5.29279 5.35463 5.43637 5.51627 5.57282 5.64822 5.68545 5.70341 5.76685 5.88065 5.93021 6.05415 6.08339 6.14143 6.43167 6.54051 6.67170 6.74264 7.05561 7.33829 7.36764 7.44126 7.66272 8.04794 8.42836 8.88555 9.46725 10.98197 Molecular weight = 322.12amu Principal moments of inertia in cm(-1) A = 0.018976 B = 0.003331 C = 0.003100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1475.230766 B = 8404.645627 C = 9030.869914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.073 4.073 3 C 0.148 3.852 4 C -0.116 4.116 5 C -0.059 4.059 6 C 0.556 3.444 7 O -0.534 6.534 8 N -0.588 5.588 9 C 0.107 3.893 10 C -0.135 4.135 11 C 0.015 3.985 12 C -0.515 4.515 13 H 0.074 0.926 14 C 0.069 3.931 15 N -0.899 5.899 16 Si 0.885 3.115 17 H -0.277 1.277 18 H -0.297 1.297 19 H -0.265 1.265 20 C -0.113 4.113 21 C 0.086 3.914 22 C -0.135 4.135 23 C 0.176 3.824 24 Cl -0.025 7.025 25 N -0.464 5.464 26 H 0.061 0.939 27 H 0.053 0.947 28 H 0.066 0.934 29 H 0.088 0.912 30 H 0.085 0.915 31 H 0.152 0.848 32 H 0.066 0.934 33 H 0.086 0.914 34 H 0.060 0.940 35 H 0.066 0.934 36 H 0.029 0.971 37 H 0.264 0.736 38 H 0.060 0.940 39 H 0.072 0.928 40 H 0.084 0.916 41 H 0.073 0.927 42 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.337 -6.310 -2.656 22.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.110 4.110 3 C 0.010 3.990 4 C -0.136 4.136 5 C -0.070 4.070 6 C 0.343 3.657 7 O -0.412 6.412 8 N -0.320 5.320 9 C -0.015 4.015 10 C -0.173 4.173 11 C -0.004 4.004 12 C -0.553 4.553 13 H 0.092 0.908 14 C -0.132 4.132 15 N -0.537 5.537 16 Si 0.715 3.285 17 H -0.205 1.205 18 H -0.224 1.224 19 H -0.190 1.190 20 C -0.152 4.152 21 C -0.036 4.036 22 C -0.156 4.156 23 C 0.012 3.988 24 Cl 0.004 6.996 25 N -0.176 5.176 26 H 0.080 0.920 27 H 0.072 0.928 28 H 0.085 0.915 29 H 0.106 0.894 30 H 0.104 0.896 31 H 0.170 0.830 32 H 0.084 0.916 33 H 0.104 0.896 34 H 0.078 0.922 35 H 0.084 0.916 36 H 0.047 0.953 37 H 0.074 0.926 38 H 0.079 0.921 39 H 0.091 0.909 40 H 0.102 0.898 41 H 0.091 0.909 42 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -21.784 -6.650 -2.749 22.941 hybrid contribution 0.599 1.075 1.260 1.761 sum -21.185 -5.575 -1.489 21.957 Atomic orbital electron populations 1.21690 0.93766 1.02006 1.02801 1.20547 0.97301 0.89321 1.03871 1.21154 0.92766 0.95971 0.89157 1.22183 0.96645 0.95452 0.99347 1.20364 0.97149 0.94566 0.94922 1.18048 0.80851 0.79433 0.87368 1.90776 1.72374 1.57421 1.20668 1.48058 1.33303 1.41061 1.09555 1.21868 0.91245 0.97621 0.90721 1.22444 0.92079 1.02389 1.00408 1.19194 0.96183 0.95046 0.89989 1.21007 0.88179 1.33445 1.12670 0.90811 1.25041 0.94878 0.95768 0.97546 1.69894 0.99517 1.44705 1.39591 0.86886 0.78114 0.79880 0.83597 1.20453 1.22408 1.18973 1.21839 0.91323 1.01550 1.00441 1.22471 1.00000 1.00151 0.80948 1.22247 0.97375 1.02428 0.93533 1.21443 0.95262 0.90293 0.91850 1.98422 1.88200 1.62706 1.50284 1.66608 1.23931 1.02497 1.24526 0.92030 0.92768 0.91474 0.89362 0.89621 0.83012 0.91551 0.89610 0.92166 0.91555 0.95259 0.92580 0.92108 0.90911 0.89839 0.90927 0.82453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.04 9.77 37.16 0.36 -0.68 16 2 C -0.07 -0.55 6.33 -27.89 -0.18 -0.73 16 3 C 0.15 1.55 6.18 -82.64 -0.51 1.04 16 4 C -0.12 -1.32 9.32 -39.03 -0.36 -1.69 16 5 C -0.06 -0.76 5.31 -104.66 -0.56 -1.31 16 6 C 0.56 8.69 7.43 -12.19 -0.09 8.60 16 7 O -0.53 -9.79 16.31 5.35 0.09 -9.70 16 8 N -0.59 -9.23 2.97 -173.77 -0.52 -9.75 16 9 C 0.11 1.83 6.43 -3.71 -0.02 1.81 16 10 C -0.14 -2.74 4.86 -26.45 -0.13 -2.87 16 11 C 0.01 0.32 1.66 -91.57 -0.15 0.16 16 12 C -0.52 -13.70 9.14 -34.44 -0.31 -14.02 16 13 H 0.07 2.14 7.99 -52.49 -0.42 1.72 16 14 C 0.07 1.93 5.45 -17.82 -0.10 1.83 16 15 N -0.90 -26.82 13.96 55.43 0.77 -26.05 16 16 Si 0.88 20.98 24.38 -169.99 -4.14 16.84 16 17 H -0.28 -6.44 6.85 56.52 0.39 -6.05 16 18 H -0.30 -7.14 7.11 56.52 0.40 -6.74 16 19 H -0.26 -5.87 6.53 56.52 0.37 -5.50 16 20 C -0.11 -1.99 5.30 -26.61 -0.14 -2.14 16 21 C 0.09 1.21 4.83 -3.71 -0.02 1.19 16 22 C -0.13 -1.54 7.24 -38.98 -0.28 -1.82 16 23 C 0.18 2.02 7.27 -17.49 -0.13 1.90 16 24 Cl -0.02 -0.25 29.10 -51.86 -1.51 -1.76 16 25 N -0.46 -5.44 9.82 -6.67 -0.07 -5.50 16 26 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 28 H 0.07 0.55 7.94 -51.93 -0.41 0.14 16 29 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.09 0.51 7.87 -51.93 -0.41 0.10 16 31 H 0.15 1.58 7.94 -52.48 -0.42 1.16 16 32 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 33 H 0.09 1.47 7.00 -51.93 -0.36 1.11 16 34 H 0.06 1.30 3.26 -51.93 -0.17 1.13 16 35 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 36 H 0.03 0.64 7.20 -51.93 -0.37 0.26 16 37 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 38 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 39 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 40 H 0.08 1.02 4.44 -51.93 -0.23 0.79 16 41 H 0.07 0.91 8.08 -51.93 -0.42 0.49 16 42 H 0.16 1.59 6.13 -52.49 -0.32 1.27 16 LS Contribution 346.70 15.07 5.22 5.22 Total: -1.00 -30.80 346.70 -8.44 -39.24 By element: Atomic # 1 Polarization: 5.85 SS G_CDS: -5.68 Total: 0.18 kcal Atomic # 6 Polarization: -6.09 SS G_CDS: -2.62 Total: -8.71 kcal Atomic # 7 Polarization: -41.49 SS G_CDS: 0.19 Total: -41.30 kcal Atomic # 8 Polarization: -9.79 SS G_CDS: 0.09 Total: -9.70 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -4.14 Total: 16.84 kcal Atomic # 17 Polarization: -0.25 SS G_CDS: -1.51 Total: -1.76 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -30.80 -8.44 -39.24 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397194783.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.444 kcal (2) G-P(sol) polarization free energy of solvation -30.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.240 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds