Wall clock time and date at job start Tue Mar 31 2020 13:10:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50692 * 109.46914 * 2 1 4 4 C 1.38137 * 119.54941 * 125.00221 * 3 2 1 5 5 C 1.39819 * 119.03766 * 179.97438 * 4 3 2 6 6 C 1.48151 * 120.91513 * 180.02562 * 5 4 3 7 7 O 1.21515 * 119.99965 * 325.01759 * 6 5 4 8 8 N 1.34772 * 120.00151 * 145.02018 * 6 5 4 9 9 C 1.46926 * 120.63110 * 174.35706 * 8 6 5 10 10 C 1.53192 * 108.89361 * 126.30135 * 9 8 6 11 11 C 1.53351 * 109.14857 * 54.57755 * 10 9 8 12 12 C 1.50701 * 109.40687 * 178.68552 * 11 10 9 13 13 H 1.07994 * 120.00361 * 120.12008 * 12 11 10 14 14 C 1.37880 * 119.99864 * 300.12194 * 12 11 10 15 15 N 1.31516 * 120.00042 * 180.02562 * 14 12 11 16 16 Si 1.86805 * 120.00071 * 359.97438 * 14 12 11 17 17 H 1.48497 * 109.46935 * 90.00132 * 16 14 12 18 18 H 1.48494 * 109.47430 * 210.00330 * 16 14 12 19 19 H 1.48506 * 109.47065 * 330.00584 * 16 14 12 20 20 C 1.53037 * 109.60659 * 298.71356 * 11 10 9 21 21 C 1.46928 * 120.63328 * 354.34073 * 8 6 5 22 22 C 1.39781 * 118.16957 * 0.26984 * 5 4 3 23 23 C 1.38302 * 118.98917 * 359.48276 * 22 5 4 24 24 Cl 1.73602 * 119.56864 * 180.22486 * 23 22 5 25 25 N 1.31820 * 119.54452 * 305.01682 * 3 2 1 26 26 H 1.08999 * 109.47113 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47336 * 300.00216 * 1 2 3 28 28 H 1.08998 * 109.47246 * 60.00591 * 1 2 3 29 29 H 1.08994 * 109.46727 * 239.99760 * 2 1 3 30 30 H 1.09006 * 109.46716 * 119.99752 * 2 1 3 31 31 H 1.08003 * 120.47627 * 359.97418 * 4 3 2 32 32 H 1.09002 * 109.58616 * 246.15631 * 9 8 6 33 33 H 1.09001 * 109.58892 * 6.44026 * 9 8 6 34 34 H 1.09000 * 109.49968 * 174.65630 * 10 9 8 35 35 H 1.09000 * 109.49633 * 294.75708 * 10 9 8 36 36 H 1.08997 * 109.43258 * 58.76183 * 11 10 9 37 37 H 0.97002 * 119.99832 * 179.97438 * 15 14 12 38 38 H 1.09000 * 109.49706 * 301.42176 * 20 11 10 39 39 H 1.09004 * 109.52372 * 181.34213 * 20 11 10 40 40 H 1.09000 * 109.58135 * 353.41129 * 21 8 6 41 41 H 1.08998 * 109.59017 * 113.69324 * 21 8 6 42 42 H 1.08001 * 120.50624 * 179.70191 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.9092 1.8333 0.9843 5 6 3.3689 3.1537 0.9738 6 6 4.3105 3.6402 2.0090 7 8 4.2286 3.2250 3.1481 8 7 5.2578 4.5432 1.6874 9 6 6.1183 5.1274 2.7252 10 6 7.5835 4.9270 2.3254 11 6 7.8056 5.5044 0.9222 12 6 9.2529 5.3394 0.5361 13 1 9.5160 4.7638 -0.3390 14 6 10.2411 5.9231 1.3000 15 7 11.5041 5.7795 0.9628 16 14 9.7859 6.9193 2.8134 17 1 9.7422 6.0263 3.9990 18 1 10.8009 7.9813 3.0307 19 1 8.4527 7.5421 2.6134 20 6 6.9218 4.7635 -0.0838 21 6 5.4501 4.9620 0.2922 22 6 2.9115 4.0036 -0.0373 23 6 2.0375 3.5062 -0.9867 24 17 1.4646 4.5469 -2.2526 25 7 1.6285 2.2529 -0.9392 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5137 -0.8900 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 3.2350 1.1458 1.7509 32 1 5.9073 6.1927 2.8178 33 1 5.9287 4.6331 3.6780 34 1 8.2287 5.4389 3.0394 35 1 7.8172 3.8623 2.3214 36 1 7.5479 6.5635 0.9210 37 1 12.1994 6.1906 1.5001 38 1 7.1619 3.7004 -0.0652 39 1 7.0982 5.1589 -1.0841 40 1 4.8213 4.3568 -0.3608 41 1 5.1821 6.0131 0.1859 42 1 3.2384 5.0321 -0.0786 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397194783.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:10:54 Heat of formation + Delta-G solvation = -23.370887 kcal Electronic energy + Delta-G solvation = -24956.154754 eV Core-core repulsion = 21347.215704 eV Total energy + Delta-G solvation = -3608.939050 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 322.119 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.17803 -40.72317 -38.67585 -37.80348 -35.79633 -35.08083 -33.93701 -33.23891 -32.08117 -30.87085 -28.58007 -26.39604 -25.27992 -24.66571 -23.94265 -23.02079 -21.58833 -20.26934 -18.97159 -18.81840 -17.79607 -17.44425 -17.10240 -16.69709 -16.52670 -16.20106 -15.85428 -15.22263 -15.11131 -15.03112 -14.87293 -14.75379 -14.26208 -14.18009 -13.88025 -13.67538 -13.35674 -13.20317 -12.85972 -12.58461 -12.44333 -12.34967 -12.32240 -12.14698 -11.96624 -11.80256 -11.57613 -11.50177 -11.22088 -11.12017 -10.99064 -10.71355 -10.58202 -9.97285 -9.74610 -8.29438 -6.33540 -0.52282 -0.30396 0.62516 1.31773 1.36124 1.44403 1.48256 1.77002 2.32631 2.41391 3.00754 3.06130 3.16676 3.61541 3.65208 3.85983 3.88966 4.05858 4.12926 4.17049 4.20003 4.27737 4.38876 4.39786 4.48920 4.55609 4.68098 4.71325 4.73830 4.79797 4.92475 4.96768 5.06905 5.09427 5.17200 5.20965 5.33023 5.44286 5.50812 5.66244 5.70362 6.20946 6.30606 6.50052 6.74363 6.83859 7.32163 8.87433 Molecular weight = 322.12amu Principal moments of inertia in cm(-1) A = 0.018976 B = 0.003331 C = 0.003100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1475.230766 B = 8404.645627 C = 9030.869914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.073 4.073 3 C 0.149 3.851 4 C -0.118 4.118 5 C -0.072 4.072 6 C 0.559 3.441 7 O -0.565 6.565 8 N -0.591 5.591 9 C 0.114 3.886 10 C -0.131 4.131 11 C 0.013 3.987 12 C -0.517 4.517 13 H 0.032 0.968 14 C 0.008 3.992 15 N -0.953 5.953 16 Si 0.946 3.054 17 H -0.271 1.271 18 H -0.303 1.303 19 H -0.233 1.233 20 C -0.110 4.110 21 C 0.094 3.906 22 C -0.131 4.131 23 C 0.169 3.831 24 Cl -0.015 7.015 25 N -0.474 5.474 26 H 0.079 0.921 27 H 0.048 0.952 28 H 0.054 0.946 29 H 0.097 0.903 30 H 0.103 0.897 31 H 0.159 0.841 32 H 0.088 0.912 33 H 0.085 0.915 34 H 0.050 0.950 35 H 0.047 0.953 36 H 0.038 0.962 37 H 0.264 0.736 38 H 0.044 0.956 39 H 0.077 0.923 40 H 0.106 0.894 41 H 0.101 0.899 42 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.219 -5.943 -2.325 25.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.111 4.111 3 C 0.011 3.989 4 C -0.139 4.139 5 C -0.083 4.083 6 C 0.348 3.652 7 O -0.445 6.445 8 N -0.322 5.322 9 C -0.008 4.008 10 C -0.169 4.169 11 C -0.005 4.005 12 C -0.555 4.555 13 H 0.050 0.950 14 C -0.189 4.189 15 N -0.593 5.593 16 Si 0.773 3.227 17 H -0.197 1.197 18 H -0.231 1.231 19 H -0.156 1.156 20 C -0.148 4.148 21 C -0.027 4.027 22 C -0.152 4.152 23 C 0.005 3.995 24 Cl 0.013 6.987 25 N -0.186 5.186 26 H 0.098 0.902 27 H 0.067 0.933 28 H 0.073 0.927 29 H 0.115 0.885 30 H 0.122 0.878 31 H 0.177 0.823 32 H 0.106 0.894 33 H 0.103 0.897 34 H 0.068 0.932 35 H 0.066 0.934 36 H 0.056 0.944 37 H 0.073 0.927 38 H 0.062 0.938 39 H 0.096 0.904 40 H 0.124 0.876 41 H 0.119 0.881 42 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -24.703 -6.285 -2.444 25.607 hybrid contribution 1.506 0.852 1.037 2.018 sum -23.197 -5.433 -1.407 23.866 Atomic orbital electron populations 1.21661 0.93405 1.02953 1.01893 1.20693 0.97515 0.87685 1.05200 1.21586 0.91997 0.97006 0.88289 1.22357 0.96577 0.95184 0.99733 1.20192 0.97585 0.95497 0.95050 1.18363 0.80833 0.78587 0.87456 1.90758 1.73311 1.58311 1.22156 1.48096 1.33146 1.41144 1.09831 1.21720 0.88991 0.99063 0.91056 1.22284 0.94535 1.00925 0.99197 1.19179 0.93441 0.96146 0.91777 1.21389 0.91373 1.31776 1.10979 0.94995 1.25943 0.94587 0.97279 1.01048 1.70062 1.00944 1.46810 1.41515 0.85890 0.79067 0.78217 0.79573 1.19703 1.23079 1.15573 1.21738 0.93336 0.99958 0.99761 1.22535 0.97392 1.02363 0.80407 1.22312 0.97171 1.02853 0.92911 1.21584 0.95297 0.90454 0.92145 1.98426 1.88066 1.62367 1.49797 1.66694 1.24163 1.02805 1.24965 0.90198 0.93282 0.92722 0.88489 0.87812 0.82290 0.89372 0.89674 0.93225 0.93383 0.94352 0.92698 0.93759 0.90398 0.87614 0.88124 0.80943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.73 9.77 71.98 0.70 -1.02 16 2 C -0.07 -0.93 6.33 29.85 0.19 -0.74 16 3 C 0.15 2.83 6.18 42.53 0.26 3.09 16 4 C -0.12 -2.47 9.32 22.63 0.21 -2.26 16 5 C -0.07 -1.70 5.31 -19.89 -0.11 -1.81 16 6 C 0.56 16.35 7.43 86.88 0.65 16.99 16 7 O -0.57 -19.91 16.31 -3.76 -0.06 -19.98 16 8 N -0.59 -17.04 2.97 -821.97 -2.44 -19.48 16 9 C 0.11 3.60 6.43 86.36 0.56 4.15 16 10 C -0.13 -5.15 4.86 30.78 0.15 -5.00 16 11 C 0.01 0.56 1.66 -11.41 -0.02 0.54 16 12 C -0.52 -28.14 9.14 25.60 0.23 -27.91 16 13 H 0.03 1.94 7.99 -2.91 -0.02 1.92 16 14 C 0.01 0.46 5.45 84.66 0.46 0.92 16 15 N -0.95 -58.91 13.96 21.45 0.30 -58.61 16 16 Si 0.95 42.99 24.38 68.60 1.67 44.66 16 17 H -0.27 -11.91 6.85 99.48 0.68 -11.23 16 18 H -0.30 -13.98 7.11 99.48 0.71 -13.28 16 19 H -0.23 -9.28 6.53 99.48 0.65 -8.63 16 20 C -0.11 -3.72 5.30 30.67 0.16 -3.55 16 21 C 0.09 2.36 4.83 86.36 0.42 2.77 16 22 C -0.13 -2.65 7.24 22.66 0.16 -2.49 16 23 C 0.17 3.50 7.27 84.70 0.62 4.11 16 24 Cl -0.02 -0.28 29.10 -2.72 -0.08 -0.36 16 25 N -0.47 -10.13 9.82 -175.01 -1.72 -11.85 16 26 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 27 H 0.05 0.64 8.14 -2.39 -0.02 0.63 16 28 H 0.05 0.81 7.94 -2.39 -0.02 0.79 16 29 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 30 H 0.10 0.95 7.87 -2.38 -0.02 0.93 16 31 H 0.16 3.03 7.94 -2.91 -0.02 3.00 16 32 H 0.09 2.44 8.14 -2.39 -0.02 2.43 16 33 H 0.08 2.74 7.00 -2.39 -0.02 2.73 16 34 H 0.05 2.05 3.26 -2.39 -0.01 2.04 16 35 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 36 H 0.04 1.56 7.20 -2.39 -0.02 1.54 16 37 H 0.26 15.37 8.31 -92.71 -0.77 14.60 16 38 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 39 H 0.08 2.54 8.14 -2.38 -0.02 2.52 16 40 H 0.11 2.23 4.44 -2.39 -0.01 2.22 16 41 H 0.10 2.04 8.08 -2.39 -0.02 2.02 16 42 H 0.17 2.86 6.13 -2.91 -0.02 2.84 16 Total: -1.00 -68.65 346.70 3.27 -65.38 By element: Atomic # 1 Polarization: 11.48 SS G_CDS: 0.96 Total: 12.43 kcal Atomic # 6 Polarization: -16.85 SS G_CDS: 4.65 Total: -12.21 kcal Atomic # 7 Polarization: -86.08 SS G_CDS: -3.86 Total: -89.94 kcal Atomic # 8 Polarization: -19.91 SS G_CDS: -0.06 Total: -19.98 kcal Atomic # 14 Polarization: 42.99 SS G_CDS: 1.67 Total: 44.66 kcal Atomic # 17 Polarization: -0.28 SS G_CDS: -0.08 Total: -0.36 kcal Total: -68.65 3.27 -65.38 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397194783.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.012 kcal (2) G-P(sol) polarization free energy of solvation -68.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds