Wall clock time and date at job start Tue Mar 31 2020 13:03:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.50904 * 2 1 4 4 O 1.43749 * 109.62904 * 120.32064 * 2 1 3 5 5 C 1.44789 * 104.81763 * 144.19140 * 4 2 1 6 6 C 1.54916 * 101.71844 * 323.89341 * 5 4 2 7 7 H 1.08993 * 110.69660 * 277.16381 * 6 5 4 8 8 C 1.53005 * 110.69052 * 154.13072 * 6 5 4 9 9 O 1.45199 * 109.46587 * 175.00099 * 8 6 5 10 10 C 1.34757 * 116.99701 * 180.02562 * 9 8 6 11 11 O 1.21515 * 120.00304 * 0.02562 * 10 9 8 12 12 C 1.47402 * 119.99917 * 179.97438 * 10 9 8 13 13 C 1.39725 * 120.20558 * 0.02562 * 12 10 9 14 14 C 1.37800 * 119.91658 * 180.02562 * 13 12 10 15 15 C 1.38592 * 120.32790 * 0.02562 * 14 13 12 16 16 C 1.38017 * 120.41904 * 0.02562 * 15 14 13 17 17 C 1.38839 * 120.07536 * 359.67732 * 16 15 14 18 18 O 1.35502 * 120.16826 * 180.32160 * 17 16 15 19 19 C 1.34810 * 116.99697 * 354.40148 * 18 17 16 20 20 H 1.07996 * 120.00417 * 5.06300 * 19 18 17 21 21 C 1.38709 * 119.99932 * 185.06790 * 19 18 17 22 22 N 1.31510 * 119.99809 * 359.97438 * 21 19 18 23 23 Si 1.86805 * 120.00145 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.46948 * 359.97438 * 23 21 19 25 25 H 1.48497 * 109.46908 * 119.99594 * 23 21 19 26 26 H 1.48503 * 109.46849 * 239.99887 * 23 21 19 27 27 O 1.43370 * 109.63214 * 239.68033 * 2 1 3 28 28 H 1.08992 * 109.46891 * 301.13872 * 1 2 3 29 29 H 1.09001 * 109.46700 * 61.13826 * 1 2 3 30 30 H 1.09004 * 109.47172 * 181.13172 * 1 2 3 31 31 H 1.09004 * 109.46893 * 178.86313 * 3 2 1 32 32 H 1.08994 * 109.46721 * 298.86181 * 3 2 1 33 33 H 1.08996 * 109.46845 * 58.86847 * 3 2 1 34 34 H 1.09001 * 110.97804 * 82.00118 * 5 4 2 35 35 H 1.09003 * 110.97626 * 205.78874 * 5 4 2 36 36 H 1.08995 * 109.47263 * 294.99583 * 8 6 5 37 37 H 1.08998 * 109.46811 * 55.00363 * 8 6 5 38 38 H 1.08001 * 120.03815 * 0.02562 * 13 12 10 39 39 H 1.07996 * 119.83580 * 180.02562 * 14 13 12 40 40 H 1.08011 * 119.78722 * 179.97438 * 15 14 13 41 41 H 1.07997 * 119.96577 * 179.97438 * 16 15 14 42 42 H 0.97004 * 119.99974 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0410 1.4422 0.0000 4 8 2.0129 -0.6835 1.1688 5 6 3.2065 -1.3740 0.7272 6 6 2.8147 -1.7904 -0.7126 7 1 2.2303 -2.7103 -0.7020 8 6 4.0603 -1.9533 -1.5861 9 8 3.6731 -2.4566 -2.8919 10 6 4.6600 -2.6576 -3.7872 11 8 5.8125 -2.4193 -3.4849 12 6 4.3415 -3.1677 -5.1330 13 6 3.0178 -3.4438 -5.4850 14 6 2.7268 -3.9210 -6.7446 15 6 3.7413 -4.1295 -7.6656 16 6 5.0537 -3.8625 -7.3320 17 6 5.3655 -3.3753 -6.0698 18 8 6.6526 -3.1063 -5.7426 19 6 7.5963 -3.4418 -6.6449 20 1 7.3068 -3.8272 -7.6113 21 6 8.9394 -3.2919 -6.3320 22 7 9.2919 -2.8221 -5.1554 23 14 10.2472 -3.7560 -7.5826 24 1 9.5943 -4.2550 -8.8195 25 1 11.0705 -2.5626 -7.9037 26 1 11.1162 -4.8198 -7.0183 27 8 2.0117 -0.6817 -1.1657 28 1 -0.3633 0.5314 0.8795 29 1 -0.3633 0.4961 -0.9000 30 1 -0.3634 -1.0275 0.0203 31 1 3.1308 1.4415 0.0204 32 1 1.6947 1.9502 -0.9000 33 1 1.6615 1.9620 0.8796 34 1 4.0653 -0.7028 0.7193 35 1 3.4028 -2.2492 1.3467 36 1 4.5527 -0.9876 -1.7004 37 1 4.7456 -2.6571 -1.1139 38 1 2.2237 -3.2833 -4.7708 39 1 1.7032 -4.1335 -7.0155 40 1 3.5034 -4.5042 -8.6503 41 1 5.8384 -4.0280 -8.0552 42 1 10.2311 -2.7170 -4.9367 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000751865521.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:03:30 Heat of formation + Delta-G solvation = -171.063346 kcal Electronic energy + Delta-G solvation = -27111.435269 eV Core-core repulsion = 23023.089877 eV Total energy + Delta-G solvation = -4088.345392 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.134 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.85326 -39.79715 -38.64672 -36.44202 -35.79656 -35.06045 -33.45654 -32.43142 -30.87467 -29.94434 -28.98351 -27.66530 -26.13601 -25.43623 -23.40082 -21.99282 -21.55223 -21.33465 -20.21461 -18.09146 -17.82419 -17.48747 -16.71333 -16.54252 -15.99954 -15.66747 -15.32346 -14.74881 -14.52080 -14.40981 -14.15404 -13.90640 -13.77911 -13.59325 -13.45067 -12.99822 -12.77723 -12.65887 -12.45936 -12.37359 -12.23324 -12.05467 -11.84224 -11.77471 -11.54042 -11.38029 -11.13696 -10.96138 -10.79389 -10.49066 -10.36290 -10.17737 -9.83093 -9.77237 -9.27713 -8.95668 -8.34141 -7.39845 -6.53420 -4.13054 1.58507 2.29387 3.07173 3.07427 3.08361 3.12253 3.14159 3.43209 3.70995 3.86949 4.37837 4.53437 4.54984 4.59888 4.76486 4.80690 4.99481 5.09186 5.11644 5.19781 5.27605 5.35267 5.40514 5.45905 5.49026 5.55991 5.61422 5.65903 5.77783 5.82241 5.87894 5.96020 6.05299 6.11991 6.55511 6.63248 6.86814 6.92992 6.96223 7.08483 7.21163 7.28059 7.64248 7.85332 8.68000 8.87038 9.56183 10.60435 Molecular weight = 322.13amu Principal moments of inertia in cm(-1) A = 0.016526 B = 0.003066 C = 0.002685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1693.889360 B = 9131.606900 C =10426.559360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.245 3.755 3 C -0.172 4.172 4 O -0.371 6.371 5 C 0.025 3.975 6 C 0.056 3.944 7 H 0.098 0.902 8 C 0.072 3.928 9 O -0.359 6.359 10 C 0.499 3.501 11 O -0.477 6.477 12 C -0.216 4.216 13 C -0.014 4.014 14 C -0.234 4.234 15 C -0.043 4.043 16 C -0.239 4.239 17 C 0.192 3.808 18 O -0.126 6.126 19 C -0.403 4.403 20 H 0.097 0.903 21 C 0.045 3.955 22 N -0.832 5.832 23 Si 0.943 3.057 24 H -0.265 1.265 25 H -0.274 1.274 26 H -0.274 1.274 27 O -0.363 6.363 28 H 0.073 0.927 29 H 0.078 0.922 30 H 0.067 0.933 31 H 0.063 0.937 32 H 0.076 0.924 33 H 0.074 0.926 34 H 0.081 0.919 35 H 0.115 0.885 36 H 0.077 0.923 37 H 0.085 0.915 38 H 0.125 0.875 39 H 0.112 0.888 40 H 0.113 0.887 41 H 0.134 0.866 42 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.774 2.514 7.764 16.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.169 3.831 3 C -0.229 4.229 4 O -0.292 6.292 5 C -0.052 4.052 6 C -0.002 4.002 7 H 0.115 0.885 8 C -0.003 4.003 9 O -0.277 6.277 10 C 0.344 3.656 11 O -0.364 6.364 12 C -0.219 4.219 13 C -0.033 4.033 14 C -0.253 4.253 15 C -0.062 4.062 16 C -0.258 4.258 17 C 0.132 3.868 18 O -0.024 6.024 19 C -0.478 4.478 20 H 0.114 0.886 21 C -0.163 4.163 22 N -0.463 5.463 23 Si 0.767 3.233 24 H -0.189 1.189 25 H -0.199 1.199 26 H -0.199 1.199 27 O -0.285 6.285 28 H 0.092 0.908 29 H 0.097 0.903 30 H 0.086 0.914 31 H 0.083 0.917 32 H 0.095 0.905 33 H 0.093 0.907 34 H 0.099 0.901 35 H 0.133 0.867 36 H 0.095 0.905 37 H 0.103 0.897 38 H 0.143 0.857 39 H 0.130 0.870 40 H 0.131 0.869 41 H 0.152 0.848 42 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -13.176 2.850 8.241 15.800 hybrid contribution 0.880 -0.219 -0.595 1.085 sum -12.296 2.631 7.646 14.717 Atomic orbital electron populations 1.22060 0.92203 1.03596 1.03142 1.23443 0.94113 0.90594 0.74979 1.22384 1.02422 0.94853 1.03287 1.89248 1.41121 1.66599 1.32234 1.24301 0.89151 0.98048 0.93678 1.23792 0.92207 0.91721 0.92460 0.88456 1.22868 0.94675 1.00703 0.82012 1.86541 1.40006 1.78129 1.23069 1.21119 0.83162 0.76245 0.85053 1.91003 1.20288 1.46862 1.78231 1.18009 0.93320 1.19415 0.91144 1.20977 0.93944 0.92523 0.95833 1.20546 0.98565 1.11238 0.94964 1.20974 0.92416 0.94709 0.98071 1.21111 0.97292 1.10061 0.97364 1.19227 0.85733 0.90413 0.91390 1.84139 1.10095 1.65747 1.42418 1.21584 0.85032 1.44895 0.96298 0.88577 1.25420 0.97301 0.96222 0.97402 1.70124 1.17947 1.38544 1.19731 0.85625 0.79757 0.78564 0.79350 1.18873 1.19943 1.19941 1.89028 1.68141 1.42498 1.28803 0.90847 0.90329 0.91393 0.91743 0.90528 0.90726 0.90085 0.86696 0.90504 0.89658 0.85712 0.86951 0.86938 0.84805 0.91784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 9.24 37.16 0.34 -1.08 16 2 C 0.25 2.79 1.47 -26.73 -0.04 2.75 16 3 C -0.17 -1.70 9.19 37.16 0.34 -1.36 16 4 O -0.37 -4.28 11.01 -59.04 -0.65 -4.93 16 5 C 0.02 0.25 7.36 38.17 0.28 0.53 16 6 C 0.06 0.69 3.98 -25.72 -0.10 0.59 16 7 H 0.10 1.13 8.14 -51.93 -0.42 0.70 16 8 C 0.07 1.10 5.22 37.16 0.19 1.30 16 9 O -0.36 -6.76 9.47 -40.90 -0.39 -7.15 16 10 C 0.50 11.42 7.89 34.46 0.27 11.70 16 11 O -0.48 -12.82 14.96 -26.59 -0.40 -13.22 16 12 C -0.22 -4.86 5.89 -104.82 -0.62 -5.48 16 13 C -0.01 -0.27 9.61 -39.19 -0.38 -0.64 16 14 C -0.23 -3.94 10.02 -39.61 -0.40 -4.34 16 15 C -0.04 -0.76 10.03 -39.53 -0.40 -1.15 16 16 C -0.24 -5.08 9.16 -39.44 -0.36 -5.44 16 17 C 0.19 4.75 6.66 -38.57 -0.26 4.49 16 18 O -0.13 -3.66 7.84 -20.99 -0.16 -3.83 16 19 C -0.40 -11.18 9.49 30.91 0.29 -10.88 16 20 H 0.10 2.41 5.21 -52.49 -0.27 2.14 16 21 C 0.04 1.22 5.49 -17.52 -0.10 1.12 16 22 N -0.83 -24.55 13.67 55.48 0.76 -23.79 16 23 Si 0.94 20.10 29.55 -169.99 -5.02 15.08 16 24 H -0.26 -5.35 7.11 56.52 0.40 -4.95 16 25 H -0.27 -5.73 7.11 56.52 0.40 -5.32 16 26 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 27 O -0.36 -5.05 10.58 -59.31 -0.63 -5.68 16 28 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 34 H 0.08 0.76 8.05 -51.93 -0.42 0.35 16 35 H 0.12 0.88 8.14 -51.93 -0.42 0.45 16 36 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 37 H 0.09 1.22 8.14 -51.93 -0.42 0.79 16 38 H 0.12 2.02 7.61 -52.49 -0.40 1.62 16 39 H 0.11 1.53 8.06 -52.49 -0.42 1.11 16 40 H 0.11 1.59 8.06 -52.48 -0.42 1.16 16 41 H 0.13 2.77 5.64 -52.49 -0.30 2.48 16 42 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 LS Contribution 361.43 15.07 5.45 5.45 Total: -1.00 -34.09 361.43 -7.56 -41.65 By element: Atomic # 1 Polarization: 9.92 SS G_CDS: -5.59 Total: 4.33 kcal Atomic # 6 Polarization: -6.98 SS G_CDS: -0.92 Total: -7.90 kcal Atomic # 7 Polarization: -24.55 SS G_CDS: 0.76 Total: -23.79 kcal Atomic # 8 Polarization: -32.58 SS G_CDS: -2.23 Total: -34.81 kcal Atomic # 14 Polarization: 20.10 SS G_CDS: -5.02 Total: 15.08 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -34.09 -7.56 -41.65 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000751865521.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -129.415 kcal (2) G-P(sol) polarization free energy of solvation -34.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.648 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds