Wall clock time and date at job start Tue Mar 31 2020 13:34:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35993 * 117.00239 * 2 1 4 4 C 1.38032 * 119.99132 * 359.97438 * 3 2 1 5 5 C 1.40036 * 119.82684 * 180.02562 * 4 3 2 6 6 C 1.46856 * 120.09734 * 179.97438 * 5 4 3 7 7 C 1.50705 * 119.99752 * 179.97438 * 6 5 4 8 8 O 1.21294 * 120.00331 * 359.97438 * 6 5 4 9 9 C 1.40009 * 119.80292 * 359.97438 * 5 4 3 10 10 C 1.37672 * 119.97859 * 359.72422 * 9 5 4 11 11 C 1.38923 * 120.17641 * 0.55301 * 10 9 5 12 12 O 1.35749 * 119.90237 * 179.72309 * 11 10 9 13 13 C 1.42895 * 116.99985 * 359.72749 * 12 11 10 14 14 C 1.53006 * 109.47036 * 180.02562 * 13 12 11 15 15 C 1.52997 * 109.47127 * 179.97438 * 14 13 12 16 16 C 1.50696 * 109.47055 * 179.97438 * 15 14 13 17 17 O 1.21201 * 120.00205 * 0.02562 * 16 15 14 18 18 O 1.34315 * 120.00083 * 179.97438 * 16 15 14 19 19 C 1.34919 * 117.00100 * 180.02562 * 18 16 15 20 20 H 1.08004 * 120.00007 * 359.97438 * 19 18 16 21 21 C 1.38755 * 119.99983 * 179.97438 * 19 18 16 22 22 N 1.31445 * 120.00016 * 359.97438 * 21 19 18 23 23 Si 1.86804 * 119.99857 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.47021 * 90.00281 * 23 21 19 25 25 H 1.48504 * 109.46890 * 209.99768 * 23 21 19 26 26 H 1.48495 * 109.47067 * 330.00005 * 23 21 19 27 27 H 1.08993 * 109.47684 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47143 * 300.00169 * 1 2 3 29 29 H 1.09007 * 109.47003 * 59.99402 * 1 2 3 30 30 H 1.07997 * 120.08776 * 359.97438 * 4 3 2 31 31 H 1.09005 * 109.46892 * 90.00323 * 7 6 5 32 32 H 1.09009 * 109.47094 * 209.99837 * 7 6 5 33 33 H 1.08994 * 109.47781 * 330.00352 * 7 6 5 34 34 H 1.08005 * 120.00721 * 180.02562 * 9 5 4 35 35 H 1.08007 * 119.91596 * 180.27431 * 10 9 5 36 36 H 1.09001 * 109.47626 * 60.00376 * 13 12 11 37 37 H 1.09001 * 109.47255 * 300.00117 * 13 12 11 38 38 H 1.09001 * 109.47002 * 299.99477 * 14 13 12 39 39 H 1.08993 * 109.46955 * 59.99914 * 14 13 12 40 40 H 1.09001 * 109.47289 * 299.99953 * 15 14 13 41 41 H 1.09004 * 109.47261 * 59.99697 * 15 14 13 42 42 H 0.96994 * 119.99963 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2117 0.0000 4 6 1.2945 2.3692 -0.0005 5 6 1.9339 3.6151 -0.0011 6 6 1.1398 4.8504 -0.0022 7 6 1.8302 6.1900 -0.0022 8 8 -0.0718 4.7926 -0.0032 9 6 3.3325 3.6795 -0.0005 10 6 4.0746 2.5199 0.0063 11 6 3.4394 1.2844 0.0010 12 8 4.1766 0.1445 0.0021 13 6 5.5980 0.2911 0.0027 14 6 6.2533 -1.0915 0.0032 15 6 7.7752 -0.9345 0.0032 16 6 8.4207 -2.2962 0.0044 17 8 7.7318 -3.2934 0.0047 18 8 9.7594 -2.4049 0.0041 19 6 10.2727 -3.6526 0.0046 20 1 9.6131 -4.5079 0.0057 21 6 11.6479 -3.8371 0.0038 22 7 12.4507 -2.7962 0.0019 23 14 12.3586 -5.5647 0.0053 24 1 12.5458 -6.0241 -1.3944 25 1 13.6688 -5.5603 0.7043 26 1 11.4261 -6.4829 0.7071 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5140 -0.8900 30 1 0.2160 2.3142 -0.0014 31 1 1.9974 6.5126 -1.0299 32 1 1.2051 6.9210 0.5108 33 1 2.7873 6.1056 0.5123 34 1 3.8291 4.6386 -0.0005 35 1 5.1534 2.5708 0.0112 36 1 5.9063 0.8400 0.8925 37 1 5.9071 0.8390 -0.8875 38 1 5.9443 -1.6397 0.8932 39 1 5.9450 -1.6400 -0.8867 40 1 8.0840 -0.3864 -0.8870 41 1 8.0839 -0.3857 0.8930 42 1 13.4120 -2.9252 0.0017 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000061334607.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:34:22 Heat of formation + Delta-G solvation = -172.352321 kcal Electronic energy + Delta-G solvation = -25571.572116 eV Core-core repulsion = 21483.170830 eV Total energy + Delta-G solvation = -4088.401286 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.134 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.03218 -39.57174 -39.08731 -38.74230 -36.93397 -35.46373 -33.51638 -32.14224 -31.65569 -30.81535 -29.59756 -27.59077 -27.36846 -25.21814 -23.79312 -23.11735 -21.49511 -20.37924 -19.81131 -18.70750 -17.73541 -17.49036 -17.05007 -16.62188 -16.40257 -16.17857 -15.88402 -15.29308 -15.15574 -15.03078 -14.97695 -14.67927 -14.35321 -14.21440 -13.57362 -13.27255 -13.04333 -12.81987 -12.73720 -12.44965 -12.41344 -12.21350 -11.79185 -11.69157 -11.51238 -11.50760 -11.35746 -11.11447 -11.01470 -10.55418 -10.43824 -10.36950 -10.14194 -9.81234 -9.17695 -9.04734 -8.58477 -8.17553 -6.41924 -4.09686 0.31084 0.95341 2.05858 2.83271 2.94977 3.10838 3.19026 3.25158 3.37205 3.52545 3.68194 3.95252 4.33534 4.48782 4.56198 4.61055 4.72641 4.79045 4.88684 4.90214 4.90355 4.99032 5.04737 5.07975 5.11226 5.17596 5.24289 5.29707 5.39836 5.45752 5.57194 5.68940 5.82455 5.85596 5.89886 6.18568 6.25009 6.41486 6.76086 6.82147 7.15837 7.27561 7.39571 7.95086 8.71189 9.07296 9.84711 10.76210 Molecular weight = 322.13amu Principal moments of inertia in cm(-1) A = 0.026670 B = 0.001910 C = 0.001787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1049.619816 B =14655.952722 C =15669.217458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.302 6.302 3 C 0.083 3.917 4 C -0.116 4.116 5 C -0.184 4.184 6 C 0.400 3.600 7 C -0.201 4.201 8 O -0.467 6.467 9 C -0.061 4.061 10 C -0.193 4.193 11 C 0.147 3.853 12 O -0.294 6.294 13 C 0.056 3.944 14 C -0.103 4.103 15 C -0.099 4.099 16 C 0.397 3.603 17 O -0.555 6.555 18 O -0.216 6.216 19 C -0.382 4.382 20 H 0.095 0.905 21 C 0.041 3.959 22 N -0.867 5.867 23 Si 0.943 3.057 24 H -0.273 1.273 25 H -0.278 1.278 26 H -0.267 1.267 27 H 0.103 0.897 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.144 0.856 31 H 0.098 0.902 32 H 0.087 0.913 33 H 0.088 0.912 34 H 0.139 0.861 35 H 0.146 0.854 36 H 0.068 0.932 37 H 0.068 0.932 38 H 0.082 0.918 39 H 0.082 0.918 40 H 0.093 0.907 41 H 0.093 0.907 42 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.640 17.150 -0.049 26.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.215 6.215 3 C 0.038 3.962 4 C -0.135 4.135 5 C -0.185 4.185 6 C 0.279 3.721 7 C -0.258 4.258 8 O -0.343 6.343 9 C -0.080 4.080 10 C -0.212 4.212 11 C 0.100 3.900 12 O -0.206 6.206 13 C -0.018 4.018 14 C -0.141 4.141 15 C -0.137 4.137 16 C 0.243 3.757 17 O -0.453 6.453 18 O -0.123 6.123 19 C -0.458 4.458 20 H 0.113 0.887 21 C -0.163 4.163 22 N -0.504 5.504 23 Si 0.768 3.232 24 H -0.199 1.199 25 H -0.203 1.203 26 H -0.191 1.191 27 H 0.121 0.879 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.162 0.838 31 H 0.116 0.884 32 H 0.106 0.894 33 H 0.106 0.894 34 H 0.156 0.844 35 H 0.163 0.837 36 H 0.086 0.914 37 H 0.086 0.914 38 H 0.101 0.899 39 H 0.101 0.899 40 H 0.112 0.888 41 H 0.112 0.888 42 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -20.161 16.497 -0.042 26.050 hybrid contribution 0.481 -0.497 -0.019 0.692 sum -19.679 16.001 -0.060 25.363 Atomic orbital electron populations 1.23113 0.78354 1.04283 1.01280 1.86236 1.21120 1.25192 1.89002 1.18139 0.89177 0.85460 1.03473 1.21261 1.00575 0.90418 1.01267 1.20133 0.94253 0.94144 1.10014 1.22356 0.88530 0.90547 0.70631 1.22239 1.02857 0.95799 1.04859 1.90536 1.16561 1.90051 1.37201 1.21181 0.92198 0.98497 0.96099 1.21142 1.01136 0.90752 1.08131 1.18672 0.88403 0.86537 0.96420 1.86175 1.19572 1.27868 1.87009 1.23026 0.77169 0.99899 1.01748 1.21244 0.92974 0.94342 1.05528 1.20907 0.93462 0.94646 1.04723 1.23027 0.83050 0.90888 0.78690 1.90569 1.64283 1.39603 1.50814 1.83870 1.19398 1.33419 1.75623 1.21224 0.90624 0.81630 1.52337 0.88691 1.25337 0.94911 0.99789 0.96234 1.69989 1.03929 1.29721 1.46749 0.85676 0.78354 0.80455 0.78729 1.19896 1.20341 1.19109 0.87877 0.92635 0.92645 0.83794 0.88365 0.89419 0.89370 0.84366 0.83653 0.91405 0.91410 0.89911 0.89917 0.88823 0.88831 0.92102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 9.81 101.05 0.99 1.19 16 2 O -0.30 -3.72 10.27 -34.39 -0.35 -4.07 16 3 C 0.08 0.99 6.69 -39.19 -0.26 0.72 16 4 C -0.12 -1.20 8.58 -38.98 -0.33 -1.54 16 5 C -0.18 -1.68 5.87 -105.07 -0.62 -2.30 16 6 C 0.40 3.48 7.22 -30.82 -0.22 3.26 16 7 C -0.20 -0.95 9.75 36.01 0.35 -0.60 16 8 O -0.47 -5.61 17.08 5.55 0.09 -5.51 16 9 C -0.06 -0.46 9.35 -39.12 -0.37 -0.83 16 10 C -0.19 -1.72 9.01 -39.53 -0.36 -2.08 16 11 C 0.15 1.74 6.71 -38.86 -0.26 1.48 16 12 O -0.29 -3.96 9.90 -33.63 -0.33 -4.29 16 13 C 0.06 0.64 4.73 37.16 0.18 0.81 16 14 C -0.10 -1.52 4.87 -26.73 -0.13 -1.65 16 15 C -0.10 -1.63 5.81 -27.89 -0.16 -1.79 16 16 C 0.40 9.53 7.91 36.00 0.28 9.81 16 17 O -0.56 -14.76 15.22 -19.05 -0.29 -15.05 16 18 O -0.22 -6.11 9.75 -20.71 -0.20 -6.31 16 19 C -0.38 -11.28 9.65 30.92 0.30 -10.98 16 20 H 0.10 2.83 6.86 -52.48 -0.36 2.47 16 21 C 0.04 1.16 5.49 -17.53 -0.10 1.06 16 22 N -0.87 -25.26 13.67 55.48 0.76 -24.50 16 23 Si 0.94 21.29 29.55 -169.99 -5.02 16.26 16 24 H -0.27 -6.00 7.11 56.52 0.40 -5.59 16 25 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 26 H -0.27 -5.94 7.11 56.52 0.40 -5.53 16 27 H 0.10 0.64 8.14 -51.93 -0.42 0.21 16 28 H 0.06 0.38 7.66 -51.93 -0.40 -0.02 16 29 H 0.05 0.38 7.66 -51.93 -0.40 -0.02 16 30 H 0.14 1.38 5.86 -52.49 -0.31 1.07 16 31 H 0.10 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.09 0.40 8.14 -51.92 -0.42 -0.02 16 33 H 0.09 0.26 6.45 -51.93 -0.34 -0.08 16 34 H 0.14 0.58 6.34 -52.48 -0.33 0.25 16 35 H 0.15 1.00 6.27 -52.48 -0.33 0.67 16 36 H 0.07 0.64 7.64 -51.93 -0.40 0.24 16 37 H 0.07 0.64 7.66 -51.93 -0.40 0.24 16 38 H 0.08 1.33 8.10 -51.93 -0.42 0.91 16 39 H 0.08 1.33 8.10 -51.93 -0.42 0.91 16 40 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 41 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 42 H 0.27 7.18 8.31 -40.82 -0.34 6.84 16 LS Contribution 365.83 15.07 5.51 5.51 Total: -1.00 -36.84 365.83 -5.89 -42.72 By element: Atomic # 1 Polarization: 4.01 SS G_CDS: -5.34 Total: -1.33 kcal Atomic # 6 Polarization: -2.73 SS G_CDS: -0.71 Total: -3.43 kcal Atomic # 7 Polarization: -25.26 SS G_CDS: 0.76 Total: -24.50 kcal Atomic # 8 Polarization: -34.15 SS G_CDS: -1.08 Total: -35.23 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -36.84 -5.89 -42.72 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000061334607.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -129.628 kcal (2) G-P(sol) polarization free energy of solvation -36.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.724 kcal (6) G-S(sol) free energy of system = (1) + (5) -172.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds