Wall clock time and date at job start Tue Mar 31 2020 13:07:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.47369 * 2 1 4 4 C 1.50700 * 109.47271 * 239.99793 * 2 1 3 5 5 H 1.08002 * 119.99740 * 275.00535 * 4 2 1 6 6 C 1.37878 * 120.00049 * 94.99971 * 4 2 1 7 7 N 1.31512 * 119.99883 * 184.92178 * 6 4 2 8 8 Si 1.86803 * 119.99962 * 4.91580 * 6 4 2 9 9 H 1.48508 * 109.46771 * 84.83489 * 8 6 4 10 10 H 1.48493 * 109.47181 * 204.83358 * 8 6 4 11 11 H 1.48499 * 109.47106 * 324.84133 * 8 6 4 12 12 N 1.46496 * 109.47060 * 119.99811 * 2 1 3 13 13 C 1.46502 * 120.00413 * 59.99944 * 12 2 1 14 14 S 1.65606 * 119.99959 * 239.99882 * 12 2 1 15 15 O 1.42095 * 106.40153 * 336.46011 * 14 12 2 16 16 O 1.42104 * 106.40249 * 203.53936 * 14 12 2 17 17 N 1.65599 * 107.21744 * 90.00209 * 14 12 2 18 18 C 1.46504 * 120.00198 * 65.00166 * 17 14 12 19 19 C 1.52995 * 109.47217 * 165.00084 * 18 17 14 20 20 C 1.53002 * 110.38579 * 302.22571 * 19 18 17 21 21 C 1.53707 * 110.34031 * 180.02562 * 19 18 17 22 22 C 1.52945 * 112.48880 * 243.95069 * 21 19 18 23 23 C 1.55155 * 108.95971 * 329.89969 * 22 21 19 24 24 S 1.83393 * 110.34248 * 64.45161 * 19 18 17 25 25 H 1.09001 * 109.47174 * 294.97965 * 1 2 3 26 26 H 1.08999 * 109.47411 * 54.98147 * 1 2 3 27 27 H 1.09000 * 109.47352 * 174.98180 * 1 2 3 28 28 H 0.96999 * 119.99815 * 180.02562 * 7 6 4 29 29 H 1.08991 * 109.47116 * 270.00451 * 13 12 2 30 30 H 1.09001 * 109.46698 * 29.99946 * 13 12 2 31 31 H 1.09001 * 109.47301 * 149.99485 * 13 12 2 32 32 H 0.97000 * 119.99612 * 245.00175 * 17 14 12 33 33 H 1.09001 * 109.46962 * 44.99898 * 18 17 14 34 34 H 1.09003 * 109.46624 * 284.99816 * 18 17 14 35 35 H 1.09003 * 109.47140 * 297.77177 * 20 19 18 36 36 H 1.08998 * 109.47411 * 57.77222 * 20 19 18 37 37 H 1.09000 * 109.46910 * 177.77452 * 20 19 18 38 38 H 1.08994 * 108.89157 * 123.16053 * 21 19 18 39 39 H 1.08996 * 108.88906 * 4.73956 * 21 19 18 40 40 H 1.08997 * 109.60527 * 89.82523 * 22 21 19 41 41 H 1.09002 * 109.60635 * 209.96749 * 22 21 19 42 42 H 1.09001 * 111.13132 * 159.34985 * 23 22 21 43 43 H 1.08998 * 111.13322 * 283.52717 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.1354 -1.7855 -1.2289 6 6 2.3603 0.0120 -2.3581 7 7 2.7059 -0.6133 -3.4622 8 14 2.3135 1.8790 -2.3175 9 1 3.5992 2.3948 -1.7823 10 1 2.1058 2.3990 -3.6928 11 1 1.1987 2.3274 -1.4450 12 7 2.0183 -0.6906 1.1962 13 6 1.6644 -2.0931 1.4281 14 16 2.9704 0.1143 2.2862 15 8 3.5794 1.1830 1.5748 16 8 3.7118 -0.8788 2.9815 17 7 1.9607 0.8092 3.3998 18 6 1.1510 -0.0351 4.2818 19 6 0.6087 0.8077 5.4378 20 6 1.7594 1.4549 6.2111 21 6 -0.2444 -0.0597 6.3771 22 6 -1.7092 0.3791 6.4093 23 6 -1.7836 1.9068 6.1486 24 16 -0.5377 2.0927 4.8070 25 1 -0.3633 0.4340 0.9315 26 1 -0.3634 0.5897 -0.8416 27 1 -0.3634 -1.0237 -0.0899 28 1 2.9369 -0.1050 -4.2554 29 1 0.7376 -2.1443 1.9994 30 1 1.5295 -2.5968 0.4710 31 1 2.4629 -2.5818 1.9864 32 1 1.9054 1.7752 3.4680 33 1 1.7670 -0.8422 4.6783 34 1 0.3188 -0.4565 3.7178 35 1 2.3875 0.6774 6.6460 36 1 2.3549 2.0658 5.5327 37 1 1.3556 2.0825 7.0056 38 1 0.1651 0.0038 7.3852 39 1 -0.1939 -1.0961 6.0433 40 1 -2.2669 -0.1511 5.6373 41 1 -2.1373 0.1535 7.3860 42 1 -2.7764 2.1992 5.8064 43 1 -1.4935 2.4713 7.0348 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337897257.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:07:59 Heat of formation + Delta-G solvation = -82.365326 kcal Electronic energy + Delta-G solvation = -24800.854760 eV Core-core repulsion = 21326.845177 eV Total energy + Delta-G solvation = -3474.009583 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 322.117 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -38.04053 -36.69163 -36.26713 -35.25819 -34.79595 -32.42739 -31.41904 -29.90498 -27.41947 -25.93469 -25.61479 -25.12280 -22.58578 -20.81630 -20.43864 -18.70031 -17.45843 -17.34484 -16.92744 -16.22856 -16.13802 -15.55529 -14.89440 -14.64804 -14.35788 -14.17710 -13.77571 -13.53734 -13.26070 -13.07415 -12.92681 -12.61084 -12.45294 -12.14438 -11.95964 -11.92871 -11.84081 -11.78227 -11.52673 -11.33314 -11.26509 -11.17062 -11.08890 -10.94625 -10.77497 -10.64562 -10.29885 -10.01806 -9.75857 -9.38240 -9.29677 -8.56774 -8.04142 -7.87262 -6.14209 -4.14544 1.14341 1.57184 2.09375 3.31903 3.39643 3.45544 3.50297 4.04176 4.16342 4.24918 4.41394 4.44128 4.57723 4.75191 4.85065 4.97868 5.14114 5.19826 5.24263 5.32022 5.38501 5.45201 5.52625 5.59808 5.60807 5.68433 5.74163 5.90581 5.97557 6.04865 6.16767 6.41643 6.45521 6.61582 6.68568 6.95806 7.11038 7.23505 7.54298 7.70235 8.46120 8.89765 9.47745 10.97621 Molecular weight = 322.12amu Principal moments of inertia in cm(-1) A = 0.018706 B = 0.004441 C = 0.004205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1496.449592 B = 6303.334698 C = 6656.735436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.235 3.765 3 H 0.056 0.944 4 C -0.516 4.516 5 H 0.082 0.918 6 C 0.079 3.921 7 N -0.889 5.889 8 Si 0.866 3.134 9 H -0.265 1.265 10 H -0.287 1.287 11 H -0.263 1.263 12 N -0.982 5.982 13 C 0.094 3.906 14 S 2.772 3.228 15 O -0.976 6.976 16 O -0.994 6.994 17 N -1.132 6.132 18 C 0.145 3.855 19 C -0.019 4.019 20 C -0.133 4.133 21 C -0.123 4.123 22 C -0.124 4.124 23 C -0.074 4.074 24 S -0.274 6.274 25 H 0.029 0.971 26 H 0.052 0.948 27 H 0.051 0.949 28 H 0.267 0.733 29 H 0.036 0.964 30 H 0.085 0.915 31 H 0.065 0.935 32 H 0.412 0.588 33 H 0.086 0.914 34 H 0.075 0.925 35 H 0.068 0.932 36 H 0.068 0.932 37 H 0.062 0.938 38 H 0.077 0.923 39 H 0.084 0.916 40 H 0.079 0.921 41 H 0.080 0.920 42 H 0.104 0.896 43 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.480 1.934 22.098 24.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.132 3.868 3 H 0.073 0.927 4 C -0.557 4.557 5 H 0.100 0.900 6 C -0.125 4.125 7 N -0.526 5.526 8 Si 0.692 3.308 9 H -0.190 1.190 10 H -0.213 1.213 11 H -0.188 1.188 12 N -0.824 5.824 13 C -0.052 4.052 14 S 2.781 3.219 15 O -0.960 6.960 16 O -0.977 6.977 17 N -0.891 5.891 18 C 0.017 3.983 19 C -0.130 4.130 20 C -0.192 4.192 21 C -0.163 4.163 22 C -0.162 4.162 23 C -0.223 4.223 24 S -0.046 6.046 25 H 0.048 0.952 26 H 0.071 0.929 27 H 0.070 0.930 28 H 0.076 0.924 29 H 0.055 0.945 30 H 0.103 0.897 31 H 0.083 0.917 32 H 0.246 0.754 33 H 0.104 0.896 34 H 0.094 0.906 35 H 0.087 0.913 36 H 0.087 0.913 37 H 0.081 0.919 38 H 0.095 0.905 39 H 0.103 0.897 40 H 0.098 0.902 41 H 0.098 0.902 42 H 0.123 0.877 43 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -8.400 2.538 20.930 22.695 hybrid contribution -0.535 0.697 0.844 1.218 sum -8.935 3.235 21.774 23.757 Atomic orbital electron populations 1.22218 0.98133 1.01099 0.99065 1.19100 0.91291 0.93175 0.83269 0.92657 1.21139 1.44158 0.95925 0.94432 0.89999 1.24979 0.93830 0.98442 0.95289 1.69886 1.44975 1.36063 1.01715 0.87024 0.80252 0.86336 0.77164 1.18971 1.21267 1.18775 1.57868 1.69875 1.19845 1.34816 1.21349 0.98693 0.82303 1.02862 1.02274 0.73808 0.73245 0.72543 1.93607 1.74367 1.56146 1.71851 1.93522 1.69191 1.60528 1.74445 1.56278 1.62366 1.17346 1.53092 1.21244 0.95177 0.92243 0.89679 1.23458 0.96920 0.95326 0.97267 1.22026 0.96584 1.00837 0.99759 1.22123 0.93932 1.00565 0.99670 1.22366 0.96562 0.94031 1.03289 1.24338 1.00507 0.98686 0.98732 1.88174 1.25331 1.53284 1.37851 0.95238 0.92878 0.92954 0.92359 0.94522 0.89673 0.91662 0.75441 0.89563 0.90647 0.91344 0.91300 0.91892 0.90471 0.89713 0.90193 0.90192 0.87728 0.89420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.94 9.10 37.16 0.34 -2.60 16 2 C 0.23 5.49 2.28 -69.08 -0.16 5.33 16 3 H 0.06 1.38 4.06 -51.93 -0.21 1.17 16 4 C -0.52 -14.17 8.72 -34.44 -0.30 -14.47 16 5 H 0.08 2.37 6.82 -52.49 -0.36 2.02 16 6 C 0.08 2.27 5.47 -17.82 -0.10 2.17 16 7 N -0.89 -26.83 13.96 55.43 0.77 -26.05 16 8 Si 0.87 22.11 26.99 -169.99 -4.59 17.53 16 9 H -0.26 -6.98 7.11 56.52 0.40 -6.58 16 10 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 11 H -0.26 -6.33 6.82 56.52 0.39 -5.94 16 12 N -0.98 -19.88 3.12 -115.86 -0.36 -20.24 16 13 C 0.09 1.61 9.81 59.85 0.59 2.20 16 14 S 2.77 54.08 6.14 -107.50 -0.66 53.42 16 15 O -0.98 -22.96 16.70 -57.17 -0.95 -23.91 16 16 O -0.99 -20.30 16.21 -57.17 -0.93 -21.22 16 17 N -1.13 -16.66 5.41 -10.61 -0.06 -16.72 16 18 C 0.14 1.70 4.96 -4.04 -0.02 1.68 16 19 C -0.02 -0.18 0.85 -90.25 -0.08 -0.26 16 20 C -0.13 -1.21 8.21 37.16 0.31 -0.90 16 21 C -0.12 -0.87 5.74 -26.39 -0.15 -1.02 16 22 C -0.12 -0.77 6.34 -25.62 -0.16 -0.94 16 23 C -0.07 -0.54 7.52 38.30 0.29 -0.26 16 24 S -0.27 -3.04 21.43 -107.50 -2.30 -5.35 16 25 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 27 H 0.05 1.00 7.84 -51.93 -0.41 0.60 16 28 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 29 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.08 1.56 6.56 -51.93 -0.34 1.22 16 31 H 0.06 1.07 7.02 -51.93 -0.36 0.70 16 32 H 0.41 5.81 7.40 -34.47 -0.26 5.55 16 33 H 0.09 0.96 7.75 -51.93 -0.40 0.55 16 34 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 36 H 0.07 0.71 7.07 -51.93 -0.37 0.34 16 37 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 38 H 0.08 0.45 7.61 -51.93 -0.40 0.06 16 39 H 0.08 0.55 7.62 -51.93 -0.40 0.15 16 40 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 42 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.09 0.56 8.14 -51.93 -0.42 0.13 16 LS Contribution 359.50 15.07 5.42 5.42 Total: -1.00 -33.89 359.50 -9.99 -43.88 By element: Atomic # 1 Polarization: 9.19 SS G_CDS: -6.88 Total: 2.32 kcal Atomic # 6 Polarization: -9.62 SS G_CDS: 0.55 Total: -9.07 kcal Atomic # 7 Polarization: -63.37 SS G_CDS: 0.35 Total: -63.01 kcal Atomic # 8 Polarization: -43.25 SS G_CDS: -1.88 Total: -45.13 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -4.59 Total: 17.53 kcal Atomic # 16 Polarization: 51.04 SS G_CDS: -2.96 Total: 48.07 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -33.89 -9.99 -43.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337897257.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.487 kcal (2) G-P(sol) polarization free energy of solvation -33.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds