Wall clock time and date at job start Tue Mar 31 2020 13:07:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.47369 * 2 1 4 4 C 1.50700 * 109.47271 * 239.99793 * 2 1 3 5 5 H 1.08002 * 119.99740 * 275.00535 * 4 2 1 6 6 C 1.37878 * 120.00049 * 94.99971 * 4 2 1 7 7 N 1.31512 * 119.99883 * 184.92178 * 6 4 2 8 8 Si 1.86803 * 119.99962 * 4.91580 * 6 4 2 9 9 H 1.48508 * 109.46771 * 84.83489 * 8 6 4 10 10 H 1.48493 * 109.47181 * 204.83358 * 8 6 4 11 11 H 1.48499 * 109.47106 * 324.84133 * 8 6 4 12 12 N 1.46496 * 109.47060 * 119.99811 * 2 1 3 13 13 C 1.46502 * 120.00413 * 59.99944 * 12 2 1 14 14 S 1.65606 * 119.99959 * 239.99882 * 12 2 1 15 15 O 1.42095 * 106.40153 * 336.46011 * 14 12 2 16 16 O 1.42104 * 106.40249 * 203.53936 * 14 12 2 17 17 N 1.65599 * 107.21744 * 90.00209 * 14 12 2 18 18 C 1.46504 * 120.00198 * 65.00166 * 17 14 12 19 19 C 1.52995 * 109.47217 * 165.00084 * 18 17 14 20 20 C 1.53002 * 110.38579 * 302.22571 * 19 18 17 21 21 C 1.53707 * 110.34031 * 180.02562 * 19 18 17 22 22 C 1.52945 * 112.48880 * 243.95069 * 21 19 18 23 23 C 1.55155 * 108.95971 * 329.89969 * 22 21 19 24 24 S 1.83393 * 110.34248 * 64.45161 * 19 18 17 25 25 H 1.09001 * 109.47174 * 294.97965 * 1 2 3 26 26 H 1.08999 * 109.47411 * 54.98147 * 1 2 3 27 27 H 1.09000 * 109.47352 * 174.98180 * 1 2 3 28 28 H 0.96999 * 119.99815 * 180.02562 * 7 6 4 29 29 H 1.08991 * 109.47116 * 270.00451 * 13 12 2 30 30 H 1.09001 * 109.46698 * 29.99946 * 13 12 2 31 31 H 1.09001 * 109.47301 * 149.99485 * 13 12 2 32 32 H 0.97000 * 119.99612 * 245.00175 * 17 14 12 33 33 H 1.09001 * 109.46962 * 44.99898 * 18 17 14 34 34 H 1.09003 * 109.46624 * 284.99816 * 18 17 14 35 35 H 1.09003 * 109.47140 * 297.77177 * 20 19 18 36 36 H 1.08998 * 109.47411 * 57.77222 * 20 19 18 37 37 H 1.09000 * 109.46910 * 177.77452 * 20 19 18 38 38 H 1.08994 * 108.89157 * 123.16053 * 21 19 18 39 39 H 1.08996 * 108.88906 * 4.73956 * 21 19 18 40 40 H 1.08997 * 109.60527 * 89.82523 * 22 21 19 41 41 H 1.09002 * 109.60635 * 209.96749 * 22 21 19 42 42 H 1.09001 * 111.13132 * 159.34985 * 23 22 21 43 43 H 1.08998 * 111.13322 * 283.52717 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.1354 -1.7855 -1.2289 6 6 2.3603 0.0120 -2.3581 7 7 2.7059 -0.6133 -3.4622 8 14 2.3135 1.8790 -2.3175 9 1 3.5992 2.3948 -1.7823 10 1 2.1058 2.3990 -3.6928 11 1 1.1987 2.3274 -1.4450 12 7 2.0183 -0.6906 1.1962 13 6 1.6644 -2.0931 1.4281 14 16 2.9704 0.1143 2.2862 15 8 3.5794 1.1830 1.5748 16 8 3.7118 -0.8788 2.9815 17 7 1.9607 0.8092 3.3998 18 6 1.1510 -0.0351 4.2818 19 6 0.6087 0.8077 5.4378 20 6 1.7594 1.4549 6.2111 21 6 -0.2444 -0.0597 6.3771 22 6 -1.7092 0.3791 6.4093 23 6 -1.7836 1.9068 6.1486 24 16 -0.5377 2.0927 4.8070 25 1 -0.3633 0.4340 0.9315 26 1 -0.3634 0.5897 -0.8416 27 1 -0.3634 -1.0237 -0.0899 28 1 2.9369 -0.1050 -4.2554 29 1 0.7376 -2.1443 1.9994 30 1 1.5295 -2.5968 0.4710 31 1 2.4629 -2.5818 1.9864 32 1 1.9054 1.7752 3.4680 33 1 1.7670 -0.8422 4.6783 34 1 0.3188 -0.4565 3.7178 35 1 2.3875 0.6774 6.6460 36 1 2.3549 2.0658 5.5327 37 1 1.3556 2.0825 7.0056 38 1 0.1651 0.0038 7.3852 39 1 -0.1939 -1.0961 6.0433 40 1 -2.2669 -0.1511 5.6373 41 1 -2.1373 0.1535 7.3860 42 1 -2.7764 2.1992 5.8064 43 1 -1.4935 2.4713 7.0348 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337897257.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:07:58 Heat of formation + Delta-G solvation = -107.068355 kcal Electronic energy + Delta-G solvation = -24801.925964 eV Core-core repulsion = 21326.845177 eV Total energy + Delta-G solvation = -3475.080787 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 322.117 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -38.83661 -38.33537 -37.96352 -36.93310 -35.65058 -34.50123 -32.22023 -31.66000 -28.06838 -27.29198 -27.03607 -26.66876 -23.22908 -22.48795 -21.29481 -20.12856 -19.31062 -18.78623 -18.35488 -17.61757 -17.20886 -16.74298 -16.20028 -15.80960 -15.39899 -15.28868 -15.08818 -14.62680 -14.50766 -14.44892 -14.36630 -13.89749 -13.62029 -13.54981 -13.42705 -13.23789 -13.11545 -13.07907 -12.88876 -12.85289 -12.57559 -12.51037 -12.37329 -12.03111 -11.99200 -11.88687 -11.78000 -11.51428 -11.26718 -10.79835 -10.71984 -10.43851 -9.69124 -8.69004 -8.33811 -6.36190 -0.39130 0.86789 1.28267 1.37491 1.41977 1.45248 1.99639 2.30461 2.57424 3.06250 3.32986 3.52615 3.61552 3.81539 4.03172 4.05264 4.15562 4.33701 4.40678 4.46855 4.54241 4.67396 4.70905 4.72856 4.80582 4.82623 4.84577 4.89094 4.95190 5.01935 5.07013 5.11860 5.16335 5.25730 5.28752 5.37496 5.49167 5.57593 5.85689 6.06405 6.32791 6.70058 7.29239 8.81867 Molecular weight = 322.12amu Principal moments of inertia in cm(-1) A = 0.018706 B = 0.004441 C = 0.004205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1496.449592 B = 6303.334698 C = 6656.735436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.237 3.763 3 H 0.041 0.959 4 C -0.516 4.516 5 H 0.055 0.945 6 C 0.026 3.974 7 N -0.936 5.936 8 Si 0.909 3.091 9 H -0.281 1.281 10 H -0.276 1.276 11 H -0.238 1.238 12 N -0.991 5.991 13 C 0.090 3.910 14 S 2.791 3.209 15 O -1.020 7.020 16 O -1.004 7.004 17 N -1.116 6.116 18 C 0.134 3.866 19 C -0.005 4.005 20 C -0.135 4.135 21 C -0.123 4.123 22 C -0.120 4.120 23 C -0.057 4.057 24 S -0.350 6.350 25 H 0.058 0.942 26 H 0.046 0.954 27 H 0.060 0.940 28 H 0.267 0.733 29 H 0.078 0.922 30 H 0.066 0.934 31 H 0.071 0.929 32 H 0.417 0.583 33 H 0.096 0.904 34 H 0.083 0.917 35 H 0.078 0.922 36 H 0.050 0.950 37 H 0.075 0.925 38 H 0.094 0.906 39 H 0.094 0.906 40 H 0.075 0.925 41 H 0.104 0.896 42 H 0.111 0.889 43 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.503 2.078 25.315 27.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.133 3.867 3 H 0.059 0.941 4 C -0.556 4.556 5 H 0.073 0.927 6 C -0.173 4.173 7 N -0.575 5.575 8 Si 0.734 3.266 9 H -0.207 1.207 10 H -0.202 1.202 11 H -0.162 1.162 12 N -0.833 5.833 13 C -0.055 4.055 14 S 2.800 3.200 15 O -1.004 7.004 16 O -0.987 6.987 17 N -0.879 5.879 18 C 0.007 3.993 19 C -0.116 4.116 20 C -0.194 4.194 21 C -0.163 4.163 22 C -0.158 4.158 23 C -0.205 4.205 24 S -0.123 6.123 25 H 0.077 0.923 26 H 0.065 0.935 27 H 0.079 0.921 28 H 0.077 0.923 29 H 0.096 0.904 30 H 0.085 0.915 31 H 0.090 0.910 32 H 0.252 0.748 33 H 0.114 0.886 34 H 0.101 0.899 35 H 0.097 0.903 36 H 0.070 0.930 37 H 0.094 0.906 38 H 0.112 0.888 39 H 0.112 0.888 40 H 0.094 0.906 41 H 0.123 0.877 42 H 0.129 0.871 43 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -10.447 2.668 24.151 26.449 hybrid contribution 0.083 0.571 0.028 0.578 sum -10.364 3.239 24.179 26.505 Atomic orbital electron populations 1.22069 0.95346 1.01912 1.00328 1.18915 0.93237 0.91960 0.82624 0.94134 1.21453 1.43019 0.95028 0.96108 0.92689 1.25656 0.94276 1.02150 0.95241 1.69994 1.47539 1.37500 1.02509 0.86312 0.80172 0.82137 0.77984 1.20737 1.20173 1.16162 1.57614 1.69965 1.21211 1.34527 1.21530 1.00930 0.80433 1.02611 1.01384 0.73688 0.72396 0.72502 1.93546 1.75918 1.57601 1.73377 1.93505 1.69758 1.60990 1.74464 1.55819 1.62149 1.17795 1.52137 1.21589 0.95149 0.92472 0.90121 1.23439 0.96899 0.94627 0.96624 1.22053 0.96470 1.01126 0.99743 1.22175 0.93972 1.00345 0.99761 1.22369 0.96075 0.92874 1.04516 1.24445 0.99117 0.99820 0.97116 1.88425 1.28137 1.54713 1.41057 0.92312 0.93544 0.92077 0.92348 0.90374 0.91524 0.91010 0.74785 0.88558 0.89910 0.90345 0.93046 0.90603 0.88778 0.88782 0.90576 0.87721 0.87079 0.88188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.26 9.10 71.98 0.65 -4.60 16 2 C 0.24 10.93 2.28 44.25 0.10 11.03 16 3 H 0.04 2.01 4.06 -2.39 -0.01 2.00 16 4 C -0.52 -28.82 8.72 25.60 0.22 -28.59 16 5 H 0.05 3.30 6.82 -2.91 -0.02 3.28 16 6 C 0.03 1.54 5.47 84.66 0.46 2.00 16 7 N -0.94 -58.18 13.96 21.45 0.30 -57.88 16 8 Si 0.91 45.90 26.99 68.60 1.85 47.76 16 9 H -0.28 -14.87 7.11 99.48 0.71 -14.16 16 10 H -0.28 -13.33 7.11 99.48 0.71 -12.62 16 11 H -0.24 -10.95 6.82 99.48 0.68 -10.27 16 12 N -0.99 -39.11 3.12 -520.46 -1.62 -40.73 16 13 C 0.09 2.94 9.81 127.77 1.25 4.20 16 14 S 2.79 106.47 6.14 -56.49 -0.35 106.12 16 15 O -1.02 -48.22 16.70 -128.00 -2.14 -50.36 16 16 O -1.00 -39.82 16.21 -128.00 -2.07 -41.90 16 17 N -1.12 -30.98 5.41 -187.48 -1.01 -31.99 16 18 C 0.13 2.76 4.96 86.38 0.43 3.19 16 19 C 0.00 -0.08 0.85 -10.56 -0.01 -0.09 16 20 C -0.13 -2.12 8.21 71.98 0.59 -1.53 16 21 C -0.12 -1.23 5.74 30.81 0.18 -1.05 16 22 C -0.12 -1.01 6.34 31.31 0.20 -0.81 16 23 C -0.06 -0.65 7.52 72.72 0.55 -0.11 16 24 S -0.35 -7.06 21.43 -56.49 -1.21 -8.27 16 25 H 0.06 1.90 8.14 -2.39 -0.02 1.89 16 26 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 27 H 0.06 2.21 7.84 -2.39 -0.02 2.20 16 28 H 0.27 15.66 8.31 -92.71 -0.77 14.89 16 29 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 30 H 0.07 2.43 6.56 -2.39 -0.02 2.41 16 31 H 0.07 2.23 7.02 -2.39 -0.02 2.22 16 32 H 0.42 11.30 7.40 -96.75 -0.72 10.58 16 33 H 0.10 1.82 7.75 -2.39 -0.02 1.81 16 34 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 35 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 36 H 0.05 0.98 7.07 -2.39 -0.02 0.97 16 37 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 38 H 0.09 0.67 7.61 -2.39 -0.02 0.65 16 39 H 0.09 0.80 7.62 -2.39 -0.02 0.79 16 40 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 41 H 0.10 0.43 8.14 -2.39 -0.02 0.42 16 42 H 0.11 1.13 8.14 -2.39 -0.02 1.11 16 43 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 Total: -1.00 -75.22 359.50 -1.37 -76.59 By element: Atomic # 1 Polarization: 16.78 SS G_CDS: 0.26 Total: 17.04 kcal Atomic # 6 Polarization: -20.99 SS G_CDS: 4.63 Total: -16.36 kcal Atomic # 7 Polarization: -128.27 SS G_CDS: -2.34 Total: -130.61 kcal Atomic # 8 Polarization: -88.05 SS G_CDS: -4.21 Total: -92.26 kcal Atomic # 14 Polarization: 45.90 SS G_CDS: 1.85 Total: 47.76 kcal Atomic # 16 Polarization: 99.41 SS G_CDS: -1.56 Total: 97.85 kcal Total: -75.22 -1.37 -76.59 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337897257.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.480 kcal (2) G-P(sol) polarization free energy of solvation -75.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.589 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds