Wall clock time and date at job start Tue Mar 31 2020 12:42:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 109.46862 * 2 1 4 4 C 1.50700 * 109.47301 * 240.00091 * 2 1 3 5 5 H 1.07994 * 120.00243 * 245.47914 * 4 2 1 6 6 C 1.37883 * 119.99692 * 65.48361 * 4 2 1 7 7 N 1.31509 * 120.00284 * 9.57245 * 6 4 2 8 8 Si 1.86806 * 119.99986 * 189.57437 * 6 4 2 9 9 H 1.48494 * 109.46932 * 84.99229 * 8 6 4 10 10 H 1.48497 * 109.47205 * 204.99450 * 8 6 4 11 11 H 1.48503 * 109.46642 * 324.99557 * 8 6 4 12 12 N 1.46498 * 109.47546 * 120.00291 * 2 1 3 13 13 C 1.46496 * 119.99946 * 59.99441 * 12 2 1 14 14 S 1.65606 * 120.00095 * 240.00490 * 12 2 1 15 15 O 1.42091 * 106.39969 * 203.53650 * 14 12 2 16 16 O 1.42107 * 106.39665 * 336.45598 * 14 12 2 17 17 N 1.65596 * 107.21919 * 89.99213 * 14 12 2 18 18 C 1.42784 * 121.57159 * 269.72110 * 17 14 12 19 19 C 1.56156 * 113.97853 * 284.28905 * 18 17 14 20 20 S 1.83138 * 107.94577 * 320.99701 * 19 18 17 21 21 C 1.78696 * 105.76482 * 321.70805 * 20 19 18 22 22 H 1.08993 * 110.00418 * 333.12819 * 21 20 19 23 23 C 1.53000 * 109.93346 * 211.94484 * 21 20 19 24 24 C 1.53484 * 107.06432 * 92.55794 * 21 20 19 25 25 C 1.44327 * 112.95944 * 277.77692 * 24 21 20 26 26 H 1.08994 * 109.47288 * 302.62676 * 1 2 3 27 27 H 1.09001 * 109.47515 * 62.63117 * 1 2 3 28 28 H 1.09002 * 109.46937 * 182.62682 * 1 2 3 29 29 H 0.96996 * 120.00463 * 180.02562 * 7 6 4 30 30 H 1.09011 * 109.46816 * 90.00649 * 13 12 2 31 31 H 1.08999 * 109.47628 * 210.00287 * 13 12 2 32 32 H 1.08994 * 109.47438 * 330.00982 * 13 12 2 33 33 H 1.09001 * 108.64041 * 45.13117 * 18 17 14 34 34 H 1.08993 * 108.64681 * 162.97233 * 18 17 14 35 35 H 1.09003 * 109.80760 * 201.38219 * 19 18 17 36 36 H 1.09003 * 109.78642 * 80.59689 * 19 18 17 37 37 H 1.08993 * 109.47698 * 302.38082 * 23 21 20 38 38 H 1.09003 * 109.46842 * 62.38553 * 23 21 20 39 39 H 1.09004 * 109.46983 * 182.37744 * 23 21 20 40 40 H 1.09005 * 108.78426 * 156.88311 * 24 21 20 41 41 H 1.09001 * 108.69678 * 38.61412 * 24 21 20 42 42 H 1.09008 * 109.09441 * 298.88781 * 25 24 21 43 43 H 1.08998 * 109.10056 * 179.87307 * 25 24 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.5783 -1.6371 -1.1339 6 6 1.7950 -0.1770 -2.4796 7 7 1.3004 1.0362 -2.5934 8 14 2.1759 -1.1777 -4.0103 9 1 1.0235 -2.0599 -4.3244 10 1 2.4233 -0.2611 -5.1521 11 1 3.3840 -2.0076 -3.7710 12 7 2.0184 -0.6906 1.1961 13 6 1.6644 -2.0932 1.4279 14 16 2.9704 0.1142 2.2862 15 8 3.7118 -0.8789 2.9813 16 8 3.5794 1.1830 1.5748 17 7 1.9607 0.8090 3.3998 18 6 1.4452 2.1284 3.2207 19 6 2.4837 3.2595 3.5046 20 16 3.4839 2.7564 4.9538 21 6 2.3462 1.9536 6.0739 22 1 1.3380 2.3380 5.9201 23 6 2.7812 2.1948 7.5208 24 6 2.3877 0.4522 5.7583 25 6 1.5524 0.0889 4.6388 26 1 -0.3633 0.5540 0.8654 27 1 -0.3634 0.4724 -0.9126 28 1 -0.3633 -1.0266 0.0471 29 1 1.1330 1.4113 -3.4721 30 1 2.4158 -2.7377 0.9715 31 1 1.6238 -2.2853 2.5001 32 1 0.6905 -2.3002 0.9846 33 1 1.1001 2.2310 2.1918 34 1 0.5925 2.2627 3.8862 35 1 1.9636 4.1924 3.7219 36 1 3.1315 3.3916 2.6379 37 1 3.7973 1.8263 7.6610 38 1 2.7489 3.2628 7.7366 39 1 2.1069 1.6673 8.1956 40 1 2.0562 -0.1005 6.6375 41 1 3.4166 0.1704 5.5346 42 1 0.5168 0.3377 4.8710 43 1 1.6305 -0.9850 4.4692 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000407974376.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:42:55 Heat of formation + Delta-G solvation = -70.441962 kcal Electronic energy + Delta-G solvation = -25406.668440 eV Core-core repulsion = 21933.175893 eV Total energy + Delta-G solvation = -3473.492548 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 322.117 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -38.17300 -36.71078 -36.17160 -35.13333 -34.42543 -32.55893 -31.07560 -29.22245 -28.58959 -25.63349 -25.12359 -23.92411 -22.89885 -21.64000 -20.74914 -18.27088 -17.25739 -16.87470 -16.64395 -16.37622 -16.00430 -15.15185 -14.81166 -14.57212 -14.30471 -14.10192 -13.56894 -13.46890 -13.34748 -13.20123 -12.82948 -12.43063 -12.22537 -11.98397 -11.91686 -11.87495 -11.72056 -11.48630 -11.38413 -11.19387 -11.07213 -10.96233 -10.86504 -10.76239 -10.68205 -10.47989 -10.37090 -10.00774 -9.67875 -9.33975 -8.99861 -8.42941 -8.00567 -7.52327 -6.10569 -4.13403 1.15837 1.70779 2.72172 3.28271 3.35160 3.38266 3.44653 4.07223 4.39827 4.41781 4.68647 4.73326 4.84754 4.92320 5.04477 5.15807 5.21766 5.33988 5.44533 5.50756 5.54403 5.60980 5.65537 5.70949 5.74107 5.88943 5.94767 6.10065 6.17243 6.22948 6.34683 6.55285 6.61486 6.66200 6.79339 6.91968 7.35495 7.60537 7.73939 7.93386 8.24777 8.88415 9.51057 10.97377 Molecular weight = 322.12amu Principal moments of inertia in cm(-1) A = 0.025987 B = 0.004339 C = 0.004144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1077.212501 B = 6451.807137 C = 6755.201586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.266 3.734 3 H 0.065 0.935 4 C -0.523 4.523 5 H 0.062 0.938 6 C 0.066 3.934 7 N -0.887 5.887 8 Si 0.894 3.106 9 H -0.279 1.279 10 H -0.286 1.286 11 H -0.274 1.274 12 N -0.991 5.991 13 C 0.109 3.891 14 S 2.783 3.217 15 O -0.989 6.989 16 O -0.964 6.964 17 N -1.000 6.000 18 C 0.124 3.876 19 C -0.104 4.104 20 S -0.263 6.263 21 C -0.061 4.061 22 H 0.088 0.912 23 C -0.128 4.128 24 C -0.139 4.139 25 C 0.131 3.869 26 H 0.014 0.986 27 H 0.075 0.925 28 H 0.036 0.964 29 H 0.264 0.736 30 H 0.049 0.951 31 H 0.046 0.954 32 H 0.071 0.929 33 H 0.084 0.916 34 H 0.076 0.924 35 H 0.093 0.907 36 H 0.121 0.879 37 H 0.063 0.937 38 H 0.064 0.936 39 H 0.066 0.934 40 H 0.080 0.920 41 H 0.086 0.914 42 H 0.072 0.928 43 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.001 1.241 17.215 17.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.163 3.837 3 H 0.083 0.917 4 C -0.563 4.563 5 H 0.081 0.919 6 C -0.137 4.137 7 N -0.525 5.525 8 Si 0.722 3.278 9 H -0.205 1.205 10 H -0.212 1.212 11 H -0.199 1.199 12 N -0.834 5.834 13 C -0.038 4.038 14 S 2.793 3.207 15 O -0.973 6.973 16 O -0.947 6.947 17 N -0.836 5.836 18 C -0.006 4.006 19 C -0.254 4.254 20 S -0.036 6.036 21 C -0.190 4.190 22 H 0.106 0.894 23 C -0.186 4.186 24 C -0.180 4.180 25 C 0.006 3.994 26 H 0.033 0.967 27 H 0.094 0.906 28 H 0.055 0.945 29 H 0.073 0.927 30 H 0.068 0.932 31 H 0.065 0.935 32 H 0.090 0.910 33 H 0.102 0.898 34 H 0.094 0.906 35 H 0.111 0.889 36 H 0.139 0.861 37 H 0.082 0.918 38 H 0.083 0.917 39 H 0.085 0.915 40 H 0.098 0.902 41 H 0.105 0.895 42 H 0.090 0.910 43 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -2.051 1.585 17.213 17.407 hybrid contribution -1.617 -0.631 -1.150 2.083 sum -3.668 0.953 16.063 16.504 Atomic orbital electron populations 1.22057 0.98750 0.99283 1.00074 1.18745 0.90740 0.93531 0.80723 0.91733 1.21280 1.36250 1.08656 0.90124 0.91942 1.24908 0.95116 0.94650 0.98979 1.69934 1.44673 1.13732 1.24150 0.86574 0.78785 0.80059 0.82409 1.20527 1.21194 1.19855 1.57832 1.70255 1.19667 1.35643 1.21150 1.01653 0.82311 0.98637 1.02043 0.73522 0.73117 0.72048 1.93517 1.68724 1.60473 1.74615 1.93586 1.73393 1.55705 1.72054 1.58202 1.68280 1.22861 1.34253 1.20948 0.94898 0.81538 1.03261 1.25075 1.01148 1.00767 0.98410 1.86401 1.21429 1.76395 1.19356 1.22839 1.00866 0.97951 0.97309 0.89412 1.21636 1.02027 1.02408 0.92569 1.20870 1.03642 0.94514 0.98939 1.20006 0.98471 0.96952 0.83954 0.96701 0.90609 0.94501 0.92668 0.93232 0.93488 0.91036 0.89799 0.90553 0.88895 0.86052 0.91808 0.91732 0.91498 0.90150 0.89512 0.90999 0.89804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.05 9.09 37.16 0.34 -2.72 16 2 C 0.27 6.37 2.49 -69.08 -0.17 6.20 16 3 H 0.07 1.73 6.85 -51.93 -0.36 1.37 16 4 C -0.52 -14.04 8.33 -34.44 -0.29 -14.33 16 5 H 0.06 1.68 7.53 -52.49 -0.40 1.28 16 6 C 0.07 1.80 5.18 -17.82 -0.09 1.71 16 7 N -0.89 -24.68 12.16 55.43 0.67 -24.01 16 8 Si 0.89 21.01 29.55 -169.99 -5.02 15.99 16 9 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 10 H -0.29 -6.71 7.11 56.52 0.40 -6.30 16 11 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 12 N -0.99 -20.48 3.12 -115.86 -0.36 -20.84 16 13 C 0.11 1.92 9.48 59.84 0.57 2.49 16 14 S 2.78 55.65 6.09 -107.50 -0.65 54.99 16 15 O -0.99 -20.90 16.35 -57.17 -0.93 -21.83 16 16 O -0.96 -22.59 14.91 -57.17 -0.85 -23.45 16 17 N -1.00 -14.99 2.46 -117.65 -0.29 -15.28 16 18 C 0.12 1.66 4.95 -4.31 -0.02 1.64 16 19 C -0.10 -1.42 6.79 38.85 0.26 -1.15 16 20 S -0.26 -3.70 20.34 -107.50 -2.19 -5.89 16 21 C -0.06 -0.64 2.62 -26.48 -0.07 -0.71 16 22 H 0.09 0.83 7.16 -51.80 -0.37 0.46 16 23 C -0.13 -1.09 9.12 37.16 0.34 -0.75 16 24 C -0.14 -1.53 4.79 -30.51 -0.15 -1.67 16 25 C 0.13 1.51 5.24 -6.68 -0.04 1.48 16 26 H 0.01 0.27 8.14 -51.93 -0.42 -0.16 16 27 H 0.08 1.80 6.85 -51.93 -0.36 1.45 16 28 H 0.04 0.74 6.56 -51.93 -0.34 0.40 16 29 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 30 H 0.05 0.89 8.09 -51.92 -0.42 0.47 16 31 H 0.05 0.68 7.64 -51.93 -0.40 0.29 16 32 H 0.07 1.19 6.38 -51.93 -0.33 0.86 16 33 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 34 H 0.08 0.79 6.83 -51.93 -0.35 0.44 16 35 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.12 1.95 7.35 -51.93 -0.38 1.57 16 37 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.07 0.45 8.13 -51.93 -0.42 0.02 16 40 H 0.08 0.66 7.92 -51.93 -0.41 0.25 16 41 H 0.09 1.19 7.79 -51.93 -0.40 0.79 16 42 H 0.07 0.65 7.73 -51.92 -0.40 0.24 16 43 H 0.08 0.96 7.60 -51.93 -0.39 0.56 16 LS Contribution 353.82 15.07 5.33 5.33 Total: -1.00 -31.93 353.82 -10.60 -42.53 By element: Atomic # 1 Polarization: 7.26 SS G_CDS: -6.99 Total: 0.27 kcal Atomic # 6 Polarization: -8.51 SS G_CDS: 0.68 Total: -7.82 kcal Atomic # 7 Polarization: -60.15 SS G_CDS: 0.02 Total: -60.13 kcal Atomic # 8 Polarization: -43.49 SS G_CDS: -1.79 Total: -45.28 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Atomic # 16 Polarization: 51.94 SS G_CDS: -2.84 Total: 49.10 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -31.93 -10.60 -42.53 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000407974376.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.914 kcal (2) G-P(sol) polarization free energy of solvation -31.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds