Wall clock time and date at job start Tue Mar 31 2020 12:42:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 109.46862 * 2 1 4 4 C 1.50700 * 109.47301 * 240.00091 * 2 1 3 5 5 H 1.07994 * 120.00243 * 245.47914 * 4 2 1 6 6 C 1.37883 * 119.99692 * 65.48361 * 4 2 1 7 7 N 1.31509 * 120.00284 * 9.57245 * 6 4 2 8 8 Si 1.86806 * 119.99986 * 189.57437 * 6 4 2 9 9 H 1.48494 * 109.46932 * 84.99229 * 8 6 4 10 10 H 1.48497 * 109.47205 * 204.99450 * 8 6 4 11 11 H 1.48503 * 109.46642 * 324.99557 * 8 6 4 12 12 N 1.46498 * 109.47546 * 120.00291 * 2 1 3 13 13 C 1.46496 * 119.99946 * 59.99441 * 12 2 1 14 14 S 1.65606 * 120.00095 * 240.00490 * 12 2 1 15 15 O 1.42091 * 106.39969 * 203.53650 * 14 12 2 16 16 O 1.42107 * 106.39665 * 336.45598 * 14 12 2 17 17 N 1.65596 * 107.21919 * 89.99213 * 14 12 2 18 18 C 1.42784 * 121.57159 * 269.72110 * 17 14 12 19 19 C 1.56156 * 113.97853 * 284.28905 * 18 17 14 20 20 S 1.83138 * 107.94577 * 320.99701 * 19 18 17 21 21 C 1.78696 * 105.76482 * 321.70805 * 20 19 18 22 22 H 1.08993 * 110.00418 * 333.12819 * 21 20 19 23 23 C 1.53000 * 109.93346 * 211.94484 * 21 20 19 24 24 C 1.53484 * 107.06432 * 92.55794 * 21 20 19 25 25 C 1.44327 * 112.95944 * 277.77692 * 24 21 20 26 26 H 1.08994 * 109.47288 * 302.62676 * 1 2 3 27 27 H 1.09001 * 109.47515 * 62.63117 * 1 2 3 28 28 H 1.09002 * 109.46937 * 182.62682 * 1 2 3 29 29 H 0.96996 * 120.00463 * 180.02562 * 7 6 4 30 30 H 1.09011 * 109.46816 * 90.00649 * 13 12 2 31 31 H 1.08999 * 109.47628 * 210.00287 * 13 12 2 32 32 H 1.08994 * 109.47438 * 330.00982 * 13 12 2 33 33 H 1.09001 * 108.64041 * 45.13117 * 18 17 14 34 34 H 1.08993 * 108.64681 * 162.97233 * 18 17 14 35 35 H 1.09003 * 109.80760 * 201.38219 * 19 18 17 36 36 H 1.09003 * 109.78642 * 80.59689 * 19 18 17 37 37 H 1.08993 * 109.47698 * 302.38082 * 23 21 20 38 38 H 1.09003 * 109.46842 * 62.38553 * 23 21 20 39 39 H 1.09004 * 109.46983 * 182.37744 * 23 21 20 40 40 H 1.09005 * 108.78426 * 156.88311 * 24 21 20 41 41 H 1.09001 * 108.69678 * 38.61412 * 24 21 20 42 42 H 1.09008 * 109.09441 * 298.88781 * 25 24 21 43 43 H 1.08998 * 109.10056 * 179.87307 * 25 24 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.5783 -1.6371 -1.1339 6 6 1.7950 -0.1770 -2.4796 7 7 1.3004 1.0362 -2.5934 8 14 2.1759 -1.1777 -4.0103 9 1 1.0235 -2.0599 -4.3244 10 1 2.4233 -0.2611 -5.1521 11 1 3.3840 -2.0076 -3.7710 12 7 2.0184 -0.6906 1.1961 13 6 1.6644 -2.0932 1.4279 14 16 2.9704 0.1142 2.2862 15 8 3.7118 -0.8789 2.9813 16 8 3.5794 1.1830 1.5748 17 7 1.9607 0.8090 3.3998 18 6 1.4452 2.1284 3.2207 19 6 2.4837 3.2595 3.5046 20 16 3.4839 2.7564 4.9538 21 6 2.3462 1.9536 6.0739 22 1 1.3380 2.3380 5.9201 23 6 2.7812 2.1948 7.5208 24 6 2.3877 0.4522 5.7583 25 6 1.5524 0.0889 4.6388 26 1 -0.3633 0.5540 0.8654 27 1 -0.3634 0.4724 -0.9126 28 1 -0.3633 -1.0266 0.0471 29 1 1.1330 1.4113 -3.4721 30 1 2.4158 -2.7377 0.9715 31 1 1.6238 -2.2853 2.5001 32 1 0.6905 -2.3002 0.9846 33 1 1.1001 2.2310 2.1918 34 1 0.5925 2.2627 3.8862 35 1 1.9636 4.1924 3.7219 36 1 3.1315 3.3916 2.6379 37 1 3.7973 1.8263 7.6610 38 1 2.7489 3.2628 7.7366 39 1 2.1069 1.6673 8.1956 40 1 2.0562 -0.1005 6.6375 41 1 3.4166 0.1704 5.5346 42 1 0.5168 0.3377 4.8710 43 1 1.6305 -0.9850 4.4692 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000407974376.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:42:54 Heat of formation + Delta-G solvation = -91.885278 kcal Electronic energy + Delta-G solvation = -25407.598292 eV Core-core repulsion = 21933.175893 eV Total energy + Delta-G solvation = -3474.422399 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 322.117 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -39.17276 -38.36708 -37.88274 -36.80907 -35.36807 -34.51082 -32.02027 -30.99794 -29.58403 -27.26628 -27.00504 -24.78943 -24.00272 -22.62840 -22.46057 -19.74447 -18.75756 -18.44182 -18.15172 -17.65654 -17.29518 -16.78972 -16.11256 -15.83440 -15.55247 -15.17483 -15.08902 -14.75057 -14.58538 -14.39095 -14.30060 -13.80998 -13.59222 -13.34043 -13.24587 -13.20971 -12.97308 -12.95228 -12.80035 -12.73061 -12.63219 -12.62724 -12.29213 -12.24107 -11.98880 -11.89434 -11.83943 -11.52566 -11.20545 -10.65889 -10.49021 -10.14016 -9.67798 -8.60745 -8.15409 -6.25010 -0.36475 0.72141 1.41348 1.42838 1.51726 1.76268 2.07503 2.42385 2.60033 3.14421 3.36901 3.57105 3.71305 3.78537 3.97389 4.10658 4.22455 4.28157 4.45123 4.56131 4.62085 4.66512 4.72154 4.79971 4.81851 4.87120 4.92432 4.94355 4.95393 4.98778 5.08161 5.15406 5.19707 5.29874 5.34945 5.54006 5.62531 5.76423 5.85858 6.10696 6.27823 6.82185 7.42686 8.91290 Molecular weight = 322.12amu Principal moments of inertia in cm(-1) A = 0.025987 B = 0.004339 C = 0.004144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1077.212501 B = 6451.807137 C = 6755.201586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.271 3.729 3 H 0.028 0.972 4 C -0.543 4.543 5 H 0.054 0.946 6 C 0.021 3.979 7 N -0.913 5.913 8 Si 0.951 3.049 9 H -0.266 1.266 10 H -0.285 1.285 11 H -0.276 1.276 12 N -0.999 5.999 13 C 0.102 3.898 14 S 2.793 3.207 15 O -1.007 7.007 16 O -1.010 7.010 17 N -0.993 5.993 18 C 0.119 3.881 19 C -0.097 4.097 20 S -0.328 6.328 21 C -0.044 4.044 22 H 0.111 0.889 23 C -0.125 4.125 24 C -0.140 4.140 25 C 0.120 3.880 26 H 0.043 0.957 27 H 0.048 0.952 28 H 0.050 0.950 29 H 0.265 0.735 30 H 0.036 0.964 31 H 0.080 0.920 32 H 0.082 0.918 33 H 0.066 0.934 34 H 0.122 0.878 35 H 0.122 0.878 36 H 0.084 0.916 37 H 0.050 0.950 38 H 0.066 0.934 39 H 0.096 0.904 40 H 0.119 0.881 41 H 0.052 0.948 42 H 0.114 0.886 43 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.360 0.352 19.428 20.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.167 3.833 3 H 0.046 0.954 4 C -0.583 4.583 5 H 0.072 0.928 6 C -0.179 4.179 7 N -0.551 5.551 8 Si 0.776 3.224 9 H -0.191 1.191 10 H -0.210 1.210 11 H -0.201 1.201 12 N -0.840 5.840 13 C -0.044 4.044 14 S 2.803 3.197 15 O -0.991 6.991 16 O -0.994 6.994 17 N -0.831 5.831 18 C -0.010 4.010 19 C -0.247 4.247 20 S -0.102 6.102 21 C -0.172 4.172 22 H 0.129 0.871 23 C -0.183 4.183 24 C -0.180 4.180 25 C -0.003 4.003 26 H 0.062 0.938 27 H 0.067 0.933 28 H 0.069 0.931 29 H 0.074 0.926 30 H 0.055 0.945 31 H 0.099 0.901 32 H 0.101 0.899 33 H 0.085 0.915 34 H 0.140 0.860 35 H 0.140 0.860 36 H 0.103 0.897 37 H 0.069 0.931 38 H 0.085 0.915 39 H 0.115 0.885 40 H 0.137 0.863 41 H 0.070 0.930 42 H 0.132 0.868 43 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -4.406 0.666 19.433 19.938 hybrid contribution -0.849 -0.346 -1.706 1.937 sum -5.256 0.321 17.727 18.493 Atomic orbital electron populations 1.21838 0.96606 1.00301 0.99998 1.18425 0.92190 0.91606 0.81094 0.95396 1.21626 1.36304 1.08568 0.91772 0.92804 1.25619 0.95172 0.95503 1.01639 1.70037 1.45554 1.14837 1.24707 0.85690 0.78789 0.78790 0.79114 1.19063 1.21043 1.20113 1.57718 1.70190 1.20962 1.35176 1.21366 1.01724 0.80401 1.00888 1.01432 0.73717 0.72356 0.72147 1.93481 1.69717 1.61138 1.74739 1.93526 1.75114 1.57113 1.73638 1.57766 1.67548 1.23479 1.34347 1.21153 0.95920 0.80470 1.03497 1.25012 1.00587 1.02330 0.96799 1.86689 1.25001 1.77474 1.21014 1.22978 1.00561 0.96917 0.96762 0.87127 1.21652 1.02001 1.03014 0.91671 1.20870 1.01664 0.95229 1.00224 1.20434 1.00796 0.96867 0.82159 0.93798 0.93278 0.93104 0.92618 0.94482 0.90141 0.89913 0.91539 0.85987 0.85985 0.89726 0.93092 0.91498 0.88496 0.86328 0.92958 0.86758 0.89544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.40 9.09 71.98 0.65 -4.75 16 2 C 0.27 13.20 2.49 44.24 0.11 13.31 16 3 H 0.03 1.57 6.85 -2.39 -0.02 1.56 16 4 C -0.54 -29.68 8.33 25.60 0.21 -29.46 16 5 H 0.05 2.95 7.53 -2.91 -0.02 2.93 16 6 C 0.02 1.16 5.18 84.66 0.44 1.60 16 7 N -0.91 -51.85 12.16 21.45 0.26 -51.59 16 8 Si 0.95 43.44 29.55 68.60 2.03 45.46 16 9 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 10 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 11 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 12 N -1.00 -41.17 3.12 -520.46 -1.62 -42.79 16 13 C 0.10 3.45 9.48 127.77 1.21 4.66 16 14 S 2.79 112.97 6.09 -56.49 -0.34 112.62 16 15 O -1.01 -42.79 16.35 -128.00 -2.09 -44.88 16 16 O -1.01 -49.90 14.91 -128.00 -1.91 -51.81 16 17 N -0.99 -28.09 2.46 -526.12 -1.29 -29.38 16 18 C 0.12 2.99 4.95 88.16 0.44 3.43 16 19 C -0.10 -2.63 6.79 73.08 0.50 -2.14 16 20 S -0.33 -9.12 20.34 -56.49 -1.15 -10.27 16 21 C -0.04 -0.77 2.62 30.76 0.08 -0.69 16 22 H 0.11 1.50 7.16 -2.47 -0.02 1.48 16 23 C -0.12 -1.72 9.12 71.98 0.66 -1.06 16 24 C -0.14 -2.59 4.79 28.14 0.13 -2.45 16 25 C 0.12 2.32 5.24 83.28 0.44 2.76 16 26 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 27 H 0.05 2.33 6.85 -2.39 -0.02 2.32 16 28 H 0.05 1.96 6.56 -2.39 -0.02 1.94 16 29 H 0.26 14.28 8.31 -92.71 -0.77 13.51 16 30 H 0.04 1.32 8.09 -2.38 -0.02 1.30 16 31 H 0.08 2.15 7.64 -2.39 -0.02 2.13 16 32 H 0.08 2.59 6.38 -2.39 -0.02 2.58 16 33 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 34 H 0.12 1.97 6.83 -2.39 -0.02 1.95 16 35 H 0.12 2.49 8.14 -2.39 -0.02 2.47 16 36 H 0.08 2.91 7.35 -2.39 -0.02 2.90 16 37 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 38 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 39 H 0.10 0.81 8.13 -2.38 -0.02 0.79 16 40 H 0.12 1.36 7.92 -2.38 -0.02 1.34 16 41 H 0.05 1.37 7.79 -2.39 -0.02 1.35 16 42 H 0.11 1.33 7.73 -2.38 -0.02 1.31 16 43 H 0.09 1.66 7.60 -2.39 -0.02 1.64 16 Total: -1.00 -73.34 353.82 -0.27 -73.61 By element: Atomic # 1 Polarization: 12.85 SS G_CDS: 0.98 Total: 13.84 kcal Atomic # 6 Polarization: -19.67 SS G_CDS: 4.87 Total: -14.80 kcal Atomic # 7 Polarization: -121.11 SS G_CDS: -2.66 Total: -123.77 kcal Atomic # 8 Polarization: -92.69 SS G_CDS: -4.00 Total: -96.69 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 2.03 Total: 45.46 kcal Atomic # 16 Polarization: 103.85 SS G_CDS: -1.49 Total: 102.36 kcal Total: -73.34 -0.27 -73.61 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000407974376.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.277 kcal (2) G-P(sol) polarization free energy of solvation -73.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.608 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds