Wall clock time and date at job start Tue Mar 31 2020 13:38:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45198 * 109.46957 * 2 1 4 4 C 1.34236 * 116.99444 * 179.97438 * 3 2 1 5 5 O 1.20823 * 120.00108 * 0.02562 * 4 3 2 6 6 C 1.50704 * 119.99629 * 180.02562 * 4 3 2 7 7 C 1.52998 * 109.46699 * 180.02562 * 6 4 3 8 8 H 1.09001 * 109.47465 * 55.00161 * 7 6 4 9 9 O 1.42902 * 109.47298 * 294.99898 * 7 6 4 10 10 C 1.53006 * 109.46685 * 175.00098 * 7 6 4 11 11 O 1.45201 * 109.46867 * 184.99845 * 10 7 6 12 12 C 1.34804 * 116.99925 * 179.97438 * 11 10 7 13 13 O 1.21526 * 120.00158 * 359.97438 * 12 11 10 14 14 C 1.47288 * 120.00213 * 180.02562 * 12 11 10 15 15 C 1.39296 * 120.28603 * 354.83939 * 14 12 11 16 16 C 1.38205 * 120.08627 * 180.27692 * 15 14 12 17 17 C 1.38842 * 120.68093 * 359.73704 * 16 15 14 18 18 C 1.37598 * 120.58249 * 0.02562 * 17 16 15 19 19 C 1.40703 * 119.88779 * 0.02562 * 18 17 16 20 20 C 1.40861 * 120.33362 * 179.97438 * 19 18 17 21 21 H 1.07998 * 119.99855 * 145.73459 * 20 19 18 22 22 C 1.40294 * 120.00053 * 325.74709 * 20 19 18 23 23 N 1.30615 * 119.99944 * 339.67310 * 22 20 19 24 24 Si 1.86800 * 120.00191 * 159.68073 * 22 20 19 25 25 H 1.48501 * 109.47051 * 269.99428 * 24 22 20 26 26 H 1.48500 * 109.47071 * 29.99448 * 24 22 20 27 27 H 1.48504 * 109.46997 * 149.99554 * 24 22 20 28 28 H 1.09003 * 109.47127 * 59.99555 * 1 2 3 29 29 H 1.09000 * 109.47595 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47352 * 300.00314 * 1 2 3 31 31 H 1.09003 * 109.46679 * 240.00336 * 2 1 3 32 32 H 1.09002 * 109.46616 * 120.00355 * 2 1 3 33 33 H 1.08994 * 109.47169 * 60.00160 * 6 4 3 34 34 H 1.08999 * 109.46882 * 300.00216 * 6 4 3 35 35 H 0.96702 * 113.99834 * 299.99750 * 9 7 6 36 36 H 1.08999 * 109.47037 * 65.00222 * 10 7 6 37 37 H 1.09000 * 109.47230 * 304.99686 * 10 7 6 38 38 H 1.08000 * 119.95653 * 0.02562 * 15 14 12 39 39 H 1.07997 * 119.65882 * 179.75950 * 16 15 14 40 40 H 1.07994 * 119.70815 * 180.02562 * 17 16 15 41 41 H 1.07997 * 120.05357 * 180.02562 * 18 17 16 42 42 H 0.97001 * 119.99911 * 355.30114 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3448 1.5447 0.0005 5 8 4.0807 0.5865 0.0005 6 6 3.9208 2.9374 0.0012 7 6 5.4487 2.8572 0.0010 8 1 5.7806 2.2499 -0.8411 9 8 5.8946 2.2630 1.2218 10 6 6.0332 4.2656 -0.1240 11 8 7.4778 4.1812 -0.2431 12 6 8.1509 5.3430 -0.3632 13 8 7.5468 6.3975 -0.3686 14 6 9.6184 5.3344 -0.4889 15 6 10.3260 4.1398 -0.3770 16 6 11.7035 4.1373 -0.4899 17 6 12.3975 5.3175 -0.7206 18 6 11.7261 6.5125 -0.8405 19 6 10.3238 6.5432 -0.7286 20 6 9.6270 7.7614 -0.8493 21 1 8.6480 7.7806 -1.3049 22 6 10.2049 8.9498 -0.3780 23 7 11.1673 8.9030 0.5038 24 14 9.5978 10.5989 -1.0115 25 1 10.3809 10.9866 -2.2122 26 1 8.1609 10.4926 -1.3707 27 1 9.7691 11.6284 0.0450 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8900 31 1 1.8933 -0.5138 -0.8901 32 1 1.8933 -0.5139 0.8900 33 1 3.5846 3.4692 0.8911 34 1 3.5851 3.4697 -0.8888 35 1 5.6346 2.7515 2.0149 36 1 5.7750 4.8461 0.7616 37 1 5.6234 4.7518 -1.0094 38 1 9.7980 3.2149 -0.1978 39 1 12.2455 3.2078 -0.3982 40 1 13.4738 5.2974 -0.8066 41 1 12.2745 7.4254 -1.0203 42 1 11.4362 8.0519 0.8836 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000859485708.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:38:56 Heat of formation + Delta-G solvation = -237.241982 kcal Electronic energy + Delta-G solvation = -26359.884056 eV Core-core repulsion = 22268.668943 eV Total energy + Delta-G solvation = -4091.215113 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.134 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.66999 -41.22914 -39.47617 -38.67039 -37.52297 -36.83191 -35.83260 -33.30312 -32.45452 -31.98526 -31.32592 -28.97755 -27.24591 -24.99928 -24.17443 -23.15821 -22.87465 -22.00033 -21.50231 -19.93256 -18.92156 -18.48674 -18.16582 -18.03835 -17.45674 -17.07373 -16.69473 -16.53401 -16.25718 -15.90583 -15.62660 -15.25932 -15.09253 -14.63685 -14.52944 -14.30281 -14.06479 -13.80479 -13.61352 -13.53261 -13.16374 -12.98835 -12.79600 -12.73213 -12.54009 -12.51251 -12.10860 -12.05751 -11.97004 -11.65874 -11.62570 -11.58258 -11.54719 -11.27480 -10.99349 -10.75404 -9.74003 -9.58396 -9.22394 -6.57129 0.21031 0.86444 1.15049 1.42468 1.48125 1.62768 1.78463 1.91685 2.01424 2.28916 2.65736 3.31493 3.44732 3.46943 3.52602 3.87283 3.98400 4.00247 4.07427 4.20163 4.24624 4.28102 4.33663 4.35803 4.46112 4.52465 4.74694 4.83609 4.86452 4.87351 4.90952 5.04814 5.13651 5.33583 5.44006 5.47928 5.59558 5.67011 5.80510 5.90763 6.13627 6.24956 6.67546 6.69890 6.73159 6.77368 7.17151 7.95646 Molecular weight = 322.13amu Principal moments of inertia in cm(-1) A = 0.018912 B = 0.002547 C = 0.002289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1480.163678 B =10990.434961 C =12230.449217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.053 3.947 3 O -0.362 6.362 4 C 0.465 3.535 5 O -0.529 6.529 6 C -0.136 4.136 7 C 0.133 3.867 8 H 0.099 0.901 9 O -0.561 6.561 10 C 0.032 3.968 11 O -0.361 6.361 12 C 0.505 3.495 13 O -0.541 6.541 14 C -0.280 4.280 15 C -0.027 4.027 16 C -0.248 4.248 17 C -0.062 4.062 18 C -0.222 4.222 19 C 0.099 3.901 20 C -0.502 4.502 21 H 0.085 0.915 22 C -0.001 4.001 23 N -0.804 5.804 24 Si 1.120 2.880 25 H -0.255 1.255 26 H -0.270 1.270 27 H -0.267 1.267 28 H 0.069 0.931 29 H 0.098 0.902 30 H 0.069 0.931 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.144 0.856 34 H 0.146 0.854 35 H 0.386 0.614 36 H 0.080 0.920 37 H 0.085 0.915 38 H 0.125 0.875 39 H 0.135 0.865 40 H 0.131 0.869 41 H 0.098 0.902 42 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.981 -10.751 -0.362 20.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.021 4.021 3 O -0.279 6.279 4 C 0.309 3.691 5 O -0.418 6.418 6 C -0.173 4.173 7 C 0.073 3.927 8 H 0.117 0.883 9 O -0.368 6.368 10 C -0.042 4.042 11 O -0.279 6.279 12 C 0.357 3.643 13 O -0.434 6.434 14 C -0.283 4.283 15 C -0.045 4.045 16 C -0.267 4.267 17 C -0.081 4.081 18 C -0.241 4.241 19 C 0.096 3.904 20 C -0.529 4.529 21 H 0.103 0.897 22 C -0.218 4.218 23 N -0.427 5.427 24 Si 0.936 3.064 25 H -0.179 1.179 26 H -0.195 1.195 27 H -0.191 1.191 28 H 0.088 0.912 29 H 0.116 0.884 30 H 0.088 0.912 31 H 0.085 0.915 32 H 0.084 0.916 33 H 0.161 0.839 34 H 0.164 0.836 35 H 0.235 0.765 36 H 0.098 0.902 37 H 0.103 0.897 38 H 0.142 0.858 39 H 0.153 0.847 40 H 0.149 0.851 41 H 0.116 0.884 42 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -16.456 -9.612 -0.620 19.068 hybrid contribution -0.344 -1.453 0.368 1.537 sum -16.800 -11.065 -0.252 20.118 Atomic orbital electron populations 1.21824 0.90344 1.04342 1.03793 1.23268 0.97089 0.79289 1.02419 1.86500 1.23881 1.33615 1.83884 1.23765 0.80677 0.92853 0.71796 1.90732 1.61023 1.44223 1.45834 1.22032 0.93944 0.91381 1.09980 1.21562 0.90878 0.91034 0.89224 0.88318 1.86723 1.80183 1.54065 1.15816 1.23836 0.77701 0.98783 1.03876 1.86590 1.22213 1.34437 1.84648 1.21264 0.89056 0.80963 0.73064 1.90713 1.70471 1.32634 1.49576 1.19073 0.88673 0.96309 1.24217 1.21214 0.94740 0.95809 0.92747 1.20838 0.93527 0.98294 1.14044 1.21222 0.99672 0.92241 0.94924 1.21203 0.93832 0.97805 1.11249 1.17849 0.92462 0.92431 0.87690 1.21177 1.05222 0.93103 1.33412 0.89723 1.28587 0.92149 1.08160 0.92856 1.70469 1.21869 1.32168 1.18216 0.82965 0.76870 0.69256 0.77276 1.17920 1.19473 1.19136 0.91176 0.88354 0.91168 0.91533 0.91566 0.83858 0.83614 0.76466 0.90220 0.89707 0.85754 0.84700 0.85074 0.88372 0.90246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.29 10.29 71.98 0.74 -0.54 16 2 C 0.05 0.79 6.19 71.98 0.45 1.24 16 3 O -0.36 -6.58 10.22 -51.47 -0.53 -7.10 16 4 C 0.47 9.76 7.84 71.24 0.56 10.32 16 5 O -0.53 -15.35 15.17 27.05 0.41 -14.94 16 6 C -0.14 -2.07 5.49 29.85 0.16 -1.90 16 7 C 0.13 3.11 2.80 30.60 0.09 3.20 16 8 H 0.10 2.67 7.96 -2.39 -0.02 2.65 16 9 O -0.56 -14.89 12.54 -129.58 -1.63 -16.52 16 10 C 0.03 0.92 5.11 71.98 0.37 1.28 16 11 O -0.36 -14.32 9.45 -54.49 -0.52 -14.83 16 12 C 0.51 24.35 7.85 70.20 0.55 24.90 16 13 O -0.54 -28.24 13.38 19.75 0.26 -27.98 16 14 C -0.28 -14.16 5.92 -19.71 -0.12 -14.28 16 15 C -0.03 -1.18 9.60 22.52 0.22 -0.96 16 16 C -0.25 -10.00 10.03 22.41 0.22 -9.78 16 17 C -0.06 -2.62 10.01 22.26 0.22 -2.40 16 18 C -0.22 -11.01 7.90 22.72 0.18 -10.83 16 19 C 0.10 5.38 5.16 -21.10 -0.11 5.27 16 20 C -0.50 -27.95 7.62 23.41 0.18 -27.77 16 21 H 0.08 4.92 5.99 -2.91 -0.02 4.91 16 22 C 0.00 -0.03 5.01 85.37 0.43 0.40 16 23 N -0.80 -43.18 12.60 21.88 0.28 -42.90 16 24 Si 1.12 44.40 29.98 68.60 2.06 46.46 16 25 H -0.25 -9.26 7.11 99.48 0.71 -8.56 16 26 H -0.27 -10.45 7.11 99.48 0.71 -9.74 16 27 H -0.27 -10.13 7.11 99.48 0.71 -9.42 16 28 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 29 H 0.10 0.51 8.14 -2.39 -0.02 0.49 16 30 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 31 H 0.07 1.03 8.13 -2.39 -0.02 1.01 16 32 H 0.07 1.04 8.13 -2.39 -0.02 1.02 16 33 H 0.14 1.37 8.14 -2.39 -0.02 1.35 16 34 H 0.15 1.50 8.14 -2.39 -0.02 1.48 16 35 H 0.39 6.98 9.05 -74.06 -0.67 6.31 16 36 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 37 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 38 H 0.12 4.94 7.61 -2.91 -0.02 4.91 16 39 H 0.14 4.43 8.06 -2.91 -0.02 4.41 16 40 H 0.13 4.56 8.06 -2.91 -0.02 4.54 16 41 H 0.10 4.99 6.99 -2.91 -0.02 4.97 16 42 H 0.29 15.86 6.62 -92.71 -0.61 15.24 16 Total: -1.00 -73.67 365.08 5.01 -68.66 By element: Atomic # 1 Polarization: 30.48 SS G_CDS: 0.54 Total: 31.02 kcal Atomic # 6 Polarization: -26.00 SS G_CDS: 4.14 Total: -21.86 kcal Atomic # 7 Polarization: -43.18 SS G_CDS: 0.28 Total: -42.90 kcal Atomic # 8 Polarization: -79.39 SS G_CDS: -1.99 Total: -81.38 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 2.06 Total: 46.46 kcal Total: -73.67 5.01 -68.66 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000859485708.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -168.581 kcal (2) G-P(sol) polarization free energy of solvation -73.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -242.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -237.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds