Wall clock time and date at job start Tue Mar 31 2020 13:59:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36935 * 120.00160 * 2 1 4 4 H 1.07996 * 120.00459 * 203.81011 * 3 2 1 5 5 C 1.38811 * 119.99783 * 23.80801 * 3 2 1 6 6 N 1.31620 * 120.00166 * 10.97294 * 5 3 2 7 7 Si 1.86796 * 120.00133 * 190.96998 * 5 3 2 8 8 H 1.48508 * 109.47078 * 90.00180 * 7 5 3 9 9 H 1.48497 * 109.47657 * 210.00154 * 7 5 3 10 10 H 1.48506 * 109.47271 * 330.00488 * 7 5 3 11 11 C 1.46504 * 120.00042 * 180.02562 * 2 1 3 12 12 H 1.08992 * 109.49753 * 179.97438 * 11 2 1 13 13 C 1.53046 * 109.52096 * 300.07980 * 11 2 1 14 14 C 1.53032 * 109.53497 * 181.33343 * 13 11 2 15 15 C 1.53186 * 109.31479 * 298.63057 * 14 13 11 16 16 N 1.46930 * 108.77579 * 54.63844 * 15 14 13 17 17 C 1.34773 * 120.63375 * 126.41426 * 16 15 14 18 18 O 1.21565 * 120.00115 * 354.22506 * 17 16 15 19 19 C 1.47786 * 120.00234 * 174.22360 * 17 16 15 20 20 C 1.39611 * 120.12954 * 324.66511 * 19 17 16 21 21 C 1.37898 * 119.86884 * 179.78671 * 20 19 17 22 22 C 1.38514 * 120.12690 * 0.46748 * 21 20 19 23 23 Cl 1.73600 * 119.86721 * 179.76242 * 22 21 20 24 24 C 1.38516 * 120.26625 * 359.78778 * 22 21 20 25 25 C 1.37893 * 120.12821 * 359.97361 * 24 22 21 26 26 C 1.46924 * 118.73455 * 306.39009 * 16 15 14 27 27 H 1.08999 * 109.46525 * 275.23947 * 1 2 3 28 28 H 1.08998 * 109.47152 * 35.23615 * 1 2 3 29 29 H 1.08998 * 109.47098 * 155.24023 * 1 2 3 30 30 H 0.97002 * 119.99976 * 179.97438 * 6 5 3 31 31 H 1.09006 * 109.45453 * 301.35260 * 13 11 2 32 32 H 1.09002 * 109.46105 * 61.30909 * 13 11 2 33 33 H 1.09001 * 109.49903 * 178.67834 * 14 13 11 34 34 H 1.09005 * 109.52559 * 58.59993 * 14 13 11 35 35 H 1.09001 * 109.58946 * 294.85391 * 15 14 13 36 36 H 1.09001 * 109.59224 * 174.42139 * 15 14 13 37 37 H 1.08004 * 120.06764 * 359.97438 * 20 19 17 38 38 H 1.07997 * 119.93788 * 180.20548 * 21 20 19 39 39 H 1.07996 * 119.93449 * 179.97438 * 24 22 21 40 40 H 1.08002 * 120.06425 * 179.97438 * 25 24 22 41 41 H 1.08998 * 109.59040 * 293.81908 * 26 16 15 42 42 H 1.09007 * 109.58431 * 173.39316 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1608 1.2257 -0.3776 5 6 1.5443 2.3369 0.4853 6 7 0.4052 2.2554 1.1397 7 14 2.3461 4.0013 0.2097 8 1 1.8571 4.5810 -1.0672 9 1 1.9982 4.9103 1.3312 10 1 3.8205 3.8360 0.1456 11 6 2.1976 -1.2688 -0.0006 12 1 3.2692 -1.0701 -0.0009 13 6 1.8272 -2.0737 1.2473 14 6 2.6171 -3.3843 1.2640 15 6 2.2509 -4.2123 0.0283 16 7 2.4676 -3.3925 -1.1716 17 6 3.2394 -3.8425 -2.1807 18 8 3.8481 -4.8879 -2.0607 19 6 3.3456 -3.0652 -3.4331 20 6 2.2398 -2.3655 -3.9196 21 6 2.3462 -1.6383 -5.0864 22 6 3.5445 -1.6092 -5.7806 23 17 3.6692 -0.6965 -7.2521 24 6 4.6436 -2.3057 -5.3057 25 6 4.5506 -3.0323 -4.1374 26 6 1.8266 -2.0728 -1.2506 27 1 -0.3632 0.0938 1.0234 28 1 -0.3633 0.8394 -0.5929 29 1 -0.3633 -0.9332 -0.4304 30 1 -0.0177 3.0597 1.4791 31 1 2.0675 -1.4934 2.1382 32 1 0.7595 -2.2932 1.2342 33 1 2.3704 -3.9464 2.1647 34 1 3.6850 -3.1662 1.2524 35 1 1.2034 -4.5085 0.0841 36 1 2.8819 -5.1000 -0.0170 37 1 1.3037 -2.3912 -3.3815 38 1 1.4924 -1.0940 -5.4620 39 1 5.5751 -2.2795 -5.8514 40 1 5.4081 -3.5753 -3.7683 41 1 0.7445 -2.1945 -1.2991 42 1 2.1776 -1.5487 -2.1397 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027658043.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:59:46 Heat of formation + Delta-G solvation = 17.544474 kcal Electronic energy + Delta-G solvation = -25445.280011 eV Core-core repulsion = 21838.115184 eV Total energy + Delta-G solvation = -3607.164827 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 322.119 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.60168 -38.75361 -37.47777 -36.56798 -34.99509 -32.88167 -31.69529 -31.22309 -30.57729 -28.72338 -26.09189 -25.63392 -23.80376 -23.25643 -22.88379 -21.43544 -19.94021 -19.00754 -17.43541 -16.98304 -16.73625 -16.16127 -15.49076 -15.15589 -14.74367 -14.54859 -14.27871 -13.93503 -13.69548 -13.67187 -13.51831 -13.40857 -12.76714 -12.65198 -12.37203 -12.24318 -12.01124 -11.74004 -11.53773 -11.11631 -10.98411 -10.96467 -10.86783 -10.66153 -10.44459 -10.40599 -10.25424 -9.98245 -9.82182 -9.76953 -9.17431 -8.85575 -8.67986 -8.40856 -6.81678 -5.78172 -3.26839 0.63114 1.11185 1.91547 2.70371 3.04745 3.34605 3.41772 3.42380 3.58935 4.37774 4.51275 4.59222 4.67356 5.03684 5.11488 5.17056 5.24408 5.25310 5.38887 5.39330 5.48761 5.58698 5.64760 5.73940 5.84073 5.90152 5.97558 6.00721 6.04106 6.12858 6.18784 6.32583 6.37552 6.50226 6.63225 6.69912 6.83585 6.93201 7.29492 7.49413 7.67999 7.75477 8.18978 8.33944 9.17183 9.78879 10.27430 11.25995 Molecular weight = 322.12amu Principal moments of inertia in cm(-1) A = 0.009224 B = 0.004988 C = 0.003510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3034.877761 B = 5612.580315 C = 7974.341048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.161 3.839 2 N -0.592 5.592 3 C -0.257 4.257 4 H 0.068 0.932 5 C 0.006 3.994 6 N -0.906 5.906 7 Si 0.904 3.096 8 H -0.287 1.287 9 H -0.291 1.291 10 H -0.279 1.279 11 C 0.168 3.832 12 H 0.066 0.934 13 C -0.132 4.132 14 C -0.132 4.132 15 C 0.113 3.887 16 N -0.597 5.597 17 C 0.560 3.440 18 O -0.547 6.547 19 C -0.123 4.123 20 C -0.071 4.071 21 C -0.115 4.115 22 C -0.014 4.014 23 Cl -0.069 7.069 24 C -0.120 4.120 25 C -0.053 4.053 26 C 0.075 3.925 27 H 0.032 0.968 28 H 0.042 0.958 29 H -0.002 1.002 30 H 0.253 0.747 31 H 0.067 0.933 32 H 0.057 0.943 33 H 0.069 0.931 34 H 0.063 0.937 35 H 0.066 0.934 36 H 0.088 0.912 37 H 0.146 0.854 38 H 0.141 0.859 39 H 0.138 0.862 40 H 0.140 0.860 41 H 0.070 0.930 42 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.233 -10.600 -10.106 14.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.314 5.314 3 C -0.386 4.386 4 H 0.086 0.914 5 C -0.193 4.193 6 N -0.551 5.551 7 Si 0.734 3.266 8 H -0.214 1.214 9 H -0.217 1.217 10 H -0.205 1.205 11 C 0.059 3.941 12 H 0.084 0.916 13 C -0.172 4.172 14 C -0.170 4.170 15 C -0.009 4.009 16 N -0.329 5.329 17 C 0.348 3.652 18 O -0.426 6.426 19 C -0.126 4.126 20 C -0.090 4.090 21 C -0.134 4.134 22 C -0.041 4.041 23 Cl -0.040 7.040 24 C -0.138 4.138 25 C -0.073 4.073 26 C -0.049 4.049 27 H 0.051 0.949 28 H 0.060 0.940 29 H 0.016 0.984 30 H 0.063 0.937 31 H 0.086 0.914 32 H 0.076 0.924 33 H 0.087 0.913 34 H 0.082 0.918 35 H 0.085 0.915 36 H 0.107 0.893 37 H 0.163 0.837 38 H 0.159 0.841 39 H 0.156 0.844 40 H 0.158 0.842 41 H 0.088 0.912 42 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 3.428 -10.892 -10.073 15.226 hybrid contribution 0.224 1.262 -0.104 1.286 sum 3.652 -9.630 -10.177 14.479 Atomic orbital electron populations 1.20806 0.82594 0.95206 0.99692 1.43888 1.01769 0.99911 1.85785 1.19200 0.98786 0.85477 1.35182 0.91433 1.25029 0.97721 0.98538 0.97978 1.70051 1.18609 1.27365 1.39054 0.86271 0.78927 0.84100 0.77341 1.21422 1.21706 1.20468 1.20590 0.96547 0.86315 0.90672 0.91610 1.22125 0.99435 0.94779 1.00860 1.21926 1.01074 0.97283 0.96760 1.21635 1.01199 0.94273 0.83779 1.48081 1.48440 1.18806 1.17538 1.18240 0.78793 0.84977 0.83175 1.90747 1.45691 1.24344 1.81835 1.20015 0.95424 1.00581 0.96560 1.21561 0.98999 0.93756 0.94649 1.21035 0.96950 1.00332 0.95063 1.21161 0.95828 0.97206 0.89896 1.98379 1.98327 1.73007 1.34276 1.20987 0.98095 0.97860 0.96907 1.21131 0.97072 0.96112 0.92936 1.23082 0.97496 0.81610 1.02714 0.94938 0.93975 0.98396 0.93706 0.91411 0.92437 0.91253 0.91795 0.91545 0.89339 0.83692 0.84149 0.84378 0.84186 0.91237 0.88715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.65 8.03 59.85 0.48 4.13 16 2 N -0.59 -13.66 2.81 -173.34 -0.49 -14.14 16 3 C -0.26 -6.70 9.58 -15.06 -0.14 -6.84 16 4 H 0.07 1.75 7.82 -52.49 -0.41 1.34 16 5 C 0.01 0.16 5.14 -17.43 -0.09 0.07 16 6 N -0.91 -25.36 10.65 55.49 0.59 -24.77 16 7 Si 0.90 21.29 29.57 -169.99 -5.03 16.26 16 8 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 9 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 10 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 11 C 0.17 3.18 2.74 -67.80 -0.19 2.99 16 12 H 0.07 1.33 7.87 -51.93 -0.41 0.93 16 13 C -0.13 -2.24 5.15 -26.69 -0.14 -2.38 16 14 C -0.13 -1.81 6.08 -26.62 -0.16 -1.98 16 15 C 0.11 1.53 6.44 -3.71 -0.02 1.50 16 16 N -0.60 -8.85 2.97 -173.90 -0.52 -9.37 16 17 C 0.56 8.70 7.38 -12.36 -0.09 8.61 16 18 O -0.55 -9.74 16.24 5.31 0.09 -9.66 16 19 C -0.12 -1.68 5.29 -104.97 -0.56 -2.24 16 20 C -0.07 -0.89 7.35 -39.19 -0.29 -1.17 16 21 C -0.12 -1.34 9.81 -39.60 -0.39 -1.73 16 22 C -0.01 -0.16 6.33 -39.38 -0.25 -0.41 16 23 Cl -0.07 -0.74 28.95 -51.86 -1.50 -2.24 16 24 C -0.12 -1.32 9.81 -39.61 -0.39 -1.71 16 25 C -0.05 -0.66 9.61 -39.20 -0.38 -1.03 16 26 C 0.07 1.18 4.12 -3.71 -0.02 1.16 16 27 H 0.03 0.81 7.32 -51.93 -0.38 0.43 16 28 H 0.04 1.04 7.35 -51.93 -0.38 0.66 16 29 H 0.00 -0.05 6.36 -51.93 -0.33 -0.38 16 30 H 0.25 6.91 8.31 -40.82 -0.34 6.57 16 31 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 32 H 0.06 0.97 7.72 -51.93 -0.40 0.57 16 33 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.09 1.21 7.00 -51.93 -0.36 0.85 16 37 H 0.15 1.71 6.04 -52.48 -0.32 1.39 16 38 H 0.14 1.41 8.06 -52.49 -0.42 0.98 16 39 H 0.14 1.21 8.06 -52.49 -0.42 0.78 16 40 H 0.14 1.60 8.00 -52.49 -0.42 1.18 16 41 H 0.07 1.06 6.41 -51.93 -0.33 0.73 16 42 H 0.09 1.50 4.46 -51.92 -0.23 1.27 16 LS Contribution 348.72 15.07 5.26 5.26 Total: -1.00 -29.33 348.72 -9.86 -39.20 By element: Atomic # 1 Polarization: 6.13 SS G_CDS: -5.65 Total: 0.48 kcal Atomic # 6 Polarization: 1.59 SS G_CDS: -2.62 Total: -1.02 kcal Atomic # 7 Polarization: -47.86 SS G_CDS: -0.41 Total: -48.28 kcal Atomic # 8 Polarization: -9.74 SS G_CDS: 0.09 Total: -9.66 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.03 Total: 16.26 kcal Atomic # 17 Polarization: -0.74 SS G_CDS: -1.50 Total: -2.24 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -29.33 -9.86 -39.20 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027658043.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.742 kcal (2) G-P(sol) polarization free energy of solvation -29.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.197 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds