Wall clock time and date at job start Tue Mar 31 2020 12:50:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09007 * 110.39198 * 2 1 4 4 C 1.54388 * 110.34275 * 237.76608 * 2 1 3 5 5 N 1.48146 * 104.61599 * 264.99770 * 4 2 1 6 6 C 1.34781 * 127.83750 * 140.39555 * 5 4 2 7 7 O 1.21556 * 119.99859 * 353.90460 * 6 5 4 8 8 C 1.47780 * 119.99729 * 173.90419 * 6 5 4 9 9 C 1.39610 * 120.13459 * 338.29626 * 8 6 5 10 10 C 1.37895 * 119.86744 * 179.78873 * 9 8 6 11 11 C 1.38509 * 120.13250 * 0.49112 * 10 9 8 12 12 Cl 1.73599 * 119.87163 * 179.71939 * 11 10 9 13 13 C 1.38515 * 120.26460 * 359.74286 * 11 10 9 14 14 C 1.37895 * 120.13132 * 0.02562 * 13 11 10 15 15 C 1.48146 * 104.32265 * 320.40905 * 5 4 2 16 16 C 1.54288 * 110.34421 * 122.22900 * 2 1 3 17 17 H 1.08997 * 110.34144 * 359.89261 * 16 2 1 18 18 C 1.53003 * 110.34476 * 237.74248 * 16 2 1 19 19 N 1.46494 * 109.47074 * 174.99845 * 18 16 2 20 20 C 1.36938 * 120.00089 * 179.97438 * 19 18 16 21 21 H 1.08004 * 119.99557 * 0.02562 * 20 19 18 22 22 C 1.38808 * 120.00259 * 179.97438 * 20 19 18 23 23 N 1.31620 * 119.99999 * 180.02562 * 22 20 19 24 24 Si 1.86799 * 119.99959 * 0.02562 * 22 20 19 25 25 H 1.48493 * 109.46952 * 269.99600 * 24 22 20 26 26 H 1.48501 * 109.47204 * 29.99919 * 24 22 20 27 27 H 1.48505 * 109.46925 * 149.99898 * 24 22 20 28 28 H 1.09013 * 109.46868 * 297.76921 * 1 2 3 29 29 H 1.08995 * 109.46975 * 57.76882 * 1 2 3 30 30 H 1.08991 * 109.47441 * 177.77420 * 1 2 3 31 31 H 1.09000 * 110.40722 * 23.78246 * 4 2 1 32 32 H 1.09003 * 110.40734 * 146.21091 * 4 2 1 33 33 H 1.07998 * 120.06652 * 0.03328 * 9 8 6 34 34 H 1.08001 * 119.93487 * 180.23446 * 10 9 8 35 35 H 1.07999 * 119.93855 * 179.97438 * 13 11 10 36 36 H 1.07997 * 120.07125 * 179.97438 * 14 13 11 37 37 H 1.08993 * 110.41297 * 280.80277 * 15 5 4 38 38 H 1.09006 * 110.40111 * 158.36799 * 15 5 4 39 39 H 1.08995 * 109.47053 * 54.99643 * 18 16 2 40 40 H 1.09001 * 109.46768 * 294.99703 * 18 16 2 41 41 H 0.96996 * 120.00397 * 0.02562 * 19 18 16 42 42 H 0.96996 * 120.00008 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9098 1.0218 0.0000 4 6 2.0667 -0.7721 -1.2245 5 7 2.3138 -2.1439 -0.7225 6 6 2.0769 -3.3106 -1.3543 7 8 1.5031 -3.3160 -2.4259 8 6 2.5148 -4.5834 -0.7441 9 6 3.5345 -4.5892 0.2094 10 6 3.9357 -5.7795 0.7784 11 6 3.3363 -6.9689 0.3982 12 17 3.8518 -8.4643 1.1136 13 6 2.3275 -6.9700 -0.5510 14 6 1.9144 -5.7855 -1.1235 15 6 2.8802 -1.9422 0.6315 16 6 2.0664 -0.7715 1.2237 17 1 1.2398 -1.1488 1.8258 18 6 2.9692 0.1307 2.0675 19 7 3.3710 -0.5805 3.2835 20 6 4.1864 0.0322 4.1972 21 1 4.5330 1.0399 4.0215 22 6 4.5667 -0.6415 5.3498 23 7 5.3501 -0.0524 6.2282 24 14 3.9667 -2.3841 5.6541 25 1 2.6834 -2.3425 6.4000 26 1 3.7615 -3.0711 4.3536 27 1 4.9784 -3.1240 6.4505 28 1 -0.3633 0.4789 0.9094 29 1 -0.3633 0.5481 -0.8693 30 1 -0.3634 -1.0268 -0.0399 31 1 1.3223 -0.7871 -2.0206 32 1 2.9949 -0.3242 -1.5793 33 1 4.0053 -3.6630 0.5038 34 1 4.7218 -5.7849 1.5190 35 1 1.8640 -7.9005 -0.8438 36 1 1.1280 -5.7875 -1.8637 37 1 3.9354 -1.6770 0.5665 38 1 2.7494 -2.8400 1.2357 39 1 2.4266 1.0363 2.3386 40 1 3.8561 0.3970 1.4925 41 1 3.0600 -1.4856 3.4412 42 1 5.6162 -0.5232 7.0334 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001106909045.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:50:12 Heat of formation + Delta-G solvation = 6.197879 kcal Electronic energy + Delta-G solvation = -24902.456952 eV Core-core repulsion = 21294.800099 eV Total energy + Delta-G solvation = -3607.656852 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 322.119 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.72649 -39.11863 -37.89921 -36.68953 -34.86886 -33.24263 -31.74709 -31.35651 -30.99567 -29.51441 -26.81730 -25.98324 -23.91182 -23.08449 -22.73953 -21.18672 -20.18238 -19.78792 -17.76293 -17.49159 -17.08364 -16.21985 -16.04760 -15.25134 -14.94986 -14.63232 -14.37274 -14.22136 -13.93364 -13.71969 -13.65067 -13.42193 -13.33912 -12.82607 -12.57118 -12.57000 -12.06128 -11.99787 -11.85550 -11.72153 -11.57563 -11.41296 -11.14641 -10.98197 -10.68964 -10.57377 -10.41610 -10.21364 -10.04209 -9.65433 -9.39579 -9.09645 -8.98180 -8.78611 -7.32003 -5.83349 -3.19924 0.41691 0.95208 1.77524 2.54742 2.76816 3.28776 3.33475 3.40235 3.45036 4.19587 4.40711 4.50252 4.52123 4.54123 4.65480 4.79875 4.90923 4.99832 5.14977 5.21601 5.26839 5.41628 5.43958 5.48855 5.53202 5.59817 5.62766 5.70143 5.75315 5.83630 5.85716 5.91082 5.96029 5.98402 6.02876 6.13208 6.32398 6.37205 6.54416 6.63660 7.38811 7.91813 7.96789 8.35216 9.13527 9.85622 10.04460 11.34951 Molecular weight = 322.12amu Principal moments of inertia in cm(-1) A = 0.008454 B = 0.005016 C = 0.003290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3311.326288 B = 5581.188777 C = 8509.750551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.100 4.100 3 H 0.093 0.907 4 C 0.110 3.890 5 N -0.615 5.615 6 C 0.580 3.420 7 O -0.542 6.542 8 C -0.126 4.126 9 C -0.082 4.082 10 C -0.116 4.116 11 C -0.013 4.013 12 Cl -0.065 7.065 13 C -0.121 4.121 14 C -0.051 4.051 15 C 0.093 3.907 16 C -0.108 4.108 17 H 0.084 0.916 18 C 0.166 3.834 19 N -0.756 5.756 20 C -0.247 4.247 21 H 0.091 0.909 22 C 0.007 3.993 23 N -0.932 5.932 24 Si 0.882 3.118 25 H -0.284 1.284 26 H -0.277 1.277 27 H -0.290 1.290 28 H 0.060 0.940 29 H 0.055 0.945 30 H 0.052 0.948 31 H 0.084 0.916 32 H 0.075 0.925 33 H 0.152 0.848 34 H 0.143 0.857 35 H 0.140 0.860 36 H 0.143 0.857 37 H 0.087 0.913 38 H 0.086 0.914 39 H 0.033 0.967 40 H 0.031 0.969 41 H 0.360 0.640 42 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.000 -10.487 -15.462 19.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.120 4.120 3 H 0.111 0.889 4 C -0.013 4.013 5 N -0.348 5.348 6 C 0.370 3.630 7 O -0.420 6.420 8 C -0.129 4.129 9 C -0.100 4.100 10 C -0.134 4.134 11 C -0.040 4.040 12 Cl -0.036 7.036 13 C -0.139 4.139 14 C -0.070 4.070 15 C -0.029 4.029 16 C -0.128 4.128 17 H 0.102 0.898 18 C 0.039 3.961 19 N -0.402 5.402 20 C -0.376 4.376 21 H 0.108 0.892 22 C -0.189 4.189 23 N -0.580 5.580 24 Si 0.712 3.288 25 H -0.211 1.211 26 H -0.203 1.203 27 H -0.217 1.217 28 H 0.079 0.921 29 H 0.074 0.926 30 H 0.072 0.928 31 H 0.102 0.898 32 H 0.093 0.907 33 H 0.170 0.830 34 H 0.160 0.840 35 H 0.158 0.842 36 H 0.161 0.839 37 H 0.105 0.895 38 H 0.104 0.896 39 H 0.051 0.949 40 H 0.049 0.951 41 H 0.192 0.808 42 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -7.127 -10.537 -15.913 20.373 hybrid contribution -0.194 -1.410 0.649 1.564 sum -7.320 -11.947 -15.265 20.720 Atomic orbital electron populations 1.21824 0.94322 1.01798 1.01888 1.22114 0.96376 0.99824 0.93661 0.88909 1.22464 1.01109 0.80550 0.97130 1.48881 1.62516 1.05452 1.17907 1.17765 0.78713 0.82277 0.84235 1.90771 1.42428 1.86764 1.22074 1.19987 0.99507 0.93804 0.99636 1.21929 0.95441 0.99113 0.93551 1.21130 1.00864 0.90465 1.00977 1.21230 0.97737 0.87713 0.97295 1.98389 1.90014 1.32587 1.82640 1.21021 0.96964 0.99192 0.96748 1.21183 0.98287 0.90073 0.97439 1.22997 0.98391 0.99507 0.82009 1.22481 0.98807 0.95476 0.96030 0.89795 1.20724 0.94840 0.93515 0.87017 1.42719 1.60448 1.15392 1.21658 1.19039 1.21178 0.99565 0.97851 0.89159 1.24667 0.99568 0.97820 0.96872 1.69695 1.39331 1.37299 1.11684 0.86598 0.78394 0.86066 0.77710 1.21082 1.20318 1.21665 0.92057 0.92610 0.92849 0.89777 0.90707 0.83042 0.83966 0.84226 0.83898 0.89521 0.89562 0.94890 0.95111 0.80760 0.92990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.45 8.90 37.16 0.33 -1.12 16 2 C -0.10 -1.09 3.31 -89.22 -0.30 -1.39 16 3 H 0.09 0.94 7.71 -51.92 -0.40 0.54 16 4 C 0.11 1.23 6.62 -2.41 -0.02 1.21 16 5 N -0.61 -7.78 3.31 -170.44 -0.56 -8.34 16 6 C 0.58 8.11 7.73 -12.36 -0.10 8.01 16 7 O -0.54 -8.93 16.80 5.32 0.09 -8.84 16 8 C -0.13 -1.56 5.75 -104.97 -0.60 -2.16 16 9 C -0.08 -0.96 7.99 -39.20 -0.31 -1.27 16 10 C -0.12 -1.29 9.81 -39.61 -0.39 -1.68 16 11 C -0.01 -0.14 6.33 -39.38 -0.25 -0.39 16 12 Cl -0.07 -0.66 28.95 -51.86 -1.50 -2.16 16 13 C -0.12 -1.18 9.81 -39.60 -0.39 -1.57 16 14 C -0.05 -0.55 9.59 -39.19 -0.38 -0.93 16 15 C 0.09 1.18 4.42 -2.41 -0.01 1.17 16 16 C -0.11 -1.44 2.75 -89.22 -0.24 -1.68 16 17 H 0.08 1.17 7.71 -51.93 -0.40 0.77 16 18 C 0.17 2.81 5.38 -4.04 -0.02 2.79 16 19 N -0.76 -16.40 5.28 -59.91 -0.32 -16.71 16 20 C -0.25 -6.61 10.47 -15.06 -0.16 -6.77 16 21 H 0.09 2.61 8.06 -52.48 -0.42 2.19 16 22 C 0.01 0.19 5.50 -17.43 -0.10 0.09 16 23 N -0.93 -28.44 13.97 55.49 0.78 -27.66 16 24 Si 0.88 21.10 27.74 -169.99 -4.71 16.39 16 25 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 26 H -0.28 -6.01 6.52 56.52 0.37 -5.64 16 27 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 28 H 0.06 0.63 8.14 -51.92 -0.42 0.20 16 29 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.08 0.96 7.56 -51.93 -0.39 0.57 16 32 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.15 1.72 4.82 -52.49 -0.25 1.47 16 34 H 0.14 1.46 8.06 -52.49 -0.42 1.03 16 35 H 0.14 1.05 8.06 -52.49 -0.42 0.62 16 36 H 0.14 1.44 7.80 -52.49 -0.41 1.03 16 37 H 0.09 1.11 7.46 -51.93 -0.39 0.72 16 38 H 0.09 1.11 5.70 -51.93 -0.30 0.82 16 39 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 40 H 0.03 0.52 7.98 -51.93 -0.41 0.11 16 41 H 0.36 7.58 5.47 -40.82 -0.22 7.36 16 42 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 356.53 15.07 5.37 5.37 Total: -1.00 -31.51 356.53 -9.51 -41.02 By element: Atomic # 1 Polarization: 12.34 SS G_CDS: -5.73 Total: 6.61 kcal Atomic # 6 Polarization: -2.75 SS G_CDS: -2.93 Total: -5.68 kcal Atomic # 7 Polarization: -52.61 SS G_CDS: -0.11 Total: -52.72 kcal Atomic # 8 Polarization: -8.93 SS G_CDS: 0.09 Total: -8.84 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -4.71 Total: 16.39 kcal Atomic # 17 Polarization: -0.66 SS G_CDS: -1.50 Total: -2.16 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -31.51 -9.51 -41.02 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106909045.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.220 kcal (2) G-P(sol) polarization free energy of solvation -31.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.022 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds